{"id":28589,"name":"metasense","description":"mNGS based taxonomic profiling pipeline","url":"https://github.com/mshunjan/metasense","last_synced_at":"2025-09-05T04:04:31.642Z","repository":{"id":62373351,"uuid":"556916671","full_name":"mshunjan/metasense","owner":"mshunjan","description":"mNGS based taxonomic profiling pipeline","archived":false,"fork":false,"pushed_at":"2024-01-17T01:57:23.000Z","size":2234,"stargazers_count":4,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-13T16:37:27.092Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Groovy","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mshunjan.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-10-24T19:00:56.000Z","updated_at":"2023-09-17T21:19:31.000Z","dependencies_parsed_at":"2023-09-25T02:26:19.369Z","dependency_job_id":"9aba1bed-1c8f-4ba9-a5dd-c3f7d4de02e3","html_url":"https://github.com/mshunjan/metasense","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/mshunjan/metasense","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mshunjan","download_url":"https://codeload.github.com/mshunjan/metasense/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273709020,"owners_count":25153735,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"mshunjan","name":null,"uuid":"47159122","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/47159122?u=83d53fdbc5ba96f079a4fe383de78793670804d9\u0026v=4","repositories_count":3,"last_synced_at":"2023-05-13T22:22:51.784Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/mshunjan","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-05-13T22:22:51.785Z","updated_at":"2023-05-13T22:22:51.785Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mshunjan","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mshunjan/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"mshunjan/metasense","html_url":"https://github.com/mshunjan/metasense","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T21:54:48.783Z","updated_at":"2025-08-31T21:54:48.783Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/mshunjan%2Fmetasense/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":1},"issue_authors":{},"pull_request_authors":{"mshunjan":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10085063,"issues_count":31266148,"pull_requests_count":96293160,"authors_count":10695068,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"mshunjan","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mshunjan"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"docker/bracken_visualize/pyproject.toml","sha":null,"kind":"manifest","created_at":"2022-10-31T19:00:29.033Z","updated_at":"2022-10-31T19:00:29.033Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/docker/bracken_visualize/pyproject.toml","dependencies":[{"id":6565851795,"package_name":"python","ecosystem":"pypi","requirements":"^3.8","direct":true,"kind":"runtime","optional":false},{"id":6565851796,"package_name":"pandas","ecosystem":"pypi","requirements":"^1.5.1","direct":true,"kind":"runtime","optional":false},{"id":6565851797,"package_name":"plotly","ecosystem":"pypi","requirements":"^5.10.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.430Z","updated_at":"2023-02-15T20:31:42.430Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/.github/workflows/branch.yml","dependencies":[{"id":7693164539,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.463Z","updated_at":"2023-02-15T20:31:42.463Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/.github/workflows/ci.yml","dependencies":[{"id":7693164564,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7693164565,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.510Z","updated_at":"2023-02-15T20:31:42.510Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":7693165205,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7693165207,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.811Z","updated_at":"2023-02-15T20:31:42.811Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/.github/workflows/linting.yml","dependencies":[{"id":7693167241,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7693167242,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7693167243,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":7693167244,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7693167245,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7693167246,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7693167247,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.930Z","updated_at":"2023-02-15T20:31:42.930Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":7693167793,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7693167796,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"docker/bracken_visualize/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-02-15T20:31:42.991Z","updated_at":"2023-02-15T20:31:42.991Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/docker/bracken_visualize/Dockerfile","dependencies":[{"id":7693168064,"package_name":"python","ecosystem":"docker","requirements":"3.9-slim-bullseye","direct":true,"kind":"build","optional":false},{"id":7693168065,"package_name":"base","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bracken/bracken/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:13.123Z","updated_at":"2023-09-25T02:26:13.123Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/bracken/bracken/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:13.997Z","updated_at":"2023-09-25T02:26:13.997Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastp/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:15.598Z","updated_at":"2023-09-25T02:26:15.598Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/fastp/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:16.526Z","updated_at":"2023-09-25T02:26:16.526Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kraken2/kraken2/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:17.437Z","updated_at":"2023-09-25T02:26:17.437Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/kraken2/kraken2/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:17.954Z","updated_at":"2023-09-25T02:26:17.954Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/seqtk/sample/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:18.098Z","updated_at":"2023-09-25T02:26:18.098Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/modules/nf-core/seqtk/sample/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-25T02:26:18.662Z","updated_at":"2023-09-25T02:26:18.662Z","repository_link":"https://github.com/mshunjan/metasense/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:01.040Z","updated_at":"2025-10-07T08:12:32.758Z","avatar_url":"https://github.com/mshunjan.png","language":"Groovy","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/28589","html_url":"https://science.ecosyste.ms/projects/28589","bibtex_url":"https://science.ecosyste.ms/projects/28589/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/28589/export.apalike"}