{"id":30047,"name":"novoloop","description":"Identification of ecDNA regions using de-novo assembly of long-reads","url":"https://github.com/silkrp/novoloop","last_synced_at":"2025-09-05T04:39:40.839Z","repository":{"id":301395034,"uuid":"1009085202","full_name":"silkrp/novoloop","owner":"silkrp","description":"Identification of ecDNA regions using de-novo assembly of long-reads","archived":false,"fork":false,"pushed_at":"2025-08-14T16:49:03.000Z","size":220,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-08-14T18:23:05.426Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/silkrp.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-06-26T14:52:16.000Z","updated_at":"2025-08-14T16:11:23.000Z","dependencies_parsed_at":"2025-06-26T17:30:21.207Z","dependency_job_id":null,"html_url":"https://github.com/silkrp/novoloop","commit_stats":null,"previous_names":["silkrp/novoloop"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/silkrp/novoloop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/silkrp","download_url":"https://codeload.github.com/silkrp/novoloop/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273713593,"owners_count":25154612,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"silkrp","name":"Ryan Silk","uuid":"71289376","kind":"user","description":"Post-doctoral bioinformatician based at the MRC Human Genetics Unit, University of Edinburgh","email":"","website":null,"location":"Edinburgh","twitter":null,"company":"University of Edinburgh","icon_url":"https://avatars.githubusercontent.com/u/71289376?u=13e6437d5aed4f7d7c3e09172cdd27566bd91ccd\u0026v=4","repositories_count":1,"last_synced_at":"2025-06-26T17:19:14.879Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/silkrp","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-03-04T00:28:57.746Z","updated_at":"2025-06-26T17:19:14.879Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/silkrp","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/silkrp/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"silkrp/novoloop","html_url":"https://github.com/silkrp/novoloop","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T04:39:13.415Z","updated_at":"2025-09-05T04:39:13.415Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/silkrp%2Fnovoloop/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10085009,"issues_count":31271208,"pull_requests_count":96321502,"authors_count":10695459,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":2,"CreateEvent":2},"last_year":{"PushEvent":2,"CreateEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/local/bedtools/bamtobed/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.607Z","updated_at":"2025-06-26T17:30:19.607Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/bedtools/bamtobed/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/fastplong/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.661Z","updated_at":"2025-06-26T17:30:19.661Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/fastplong/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/flye/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.713Z","updated_at":"2025-06-26T17:30:19.713Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/flye/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/minimap2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.765Z","updated_at":"2025-06-26T17:30:19.765Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/minimap2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/local/seqtk/subseq/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.817Z","updated_at":"2025-06-26T17:30:19.817Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/seqtk/subseq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bandage/image/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.869Z","updated_at":"2025-06-26T17:30:19.869Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/bandage/image/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.924Z","updated_at":"2025-06-26T17:30:19.924Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/gunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/medaka/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:19.977Z","updated_at":"2025-06-26T17:30:19.977Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/medaka/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/minimap2/index/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.031Z","updated_at":"2025-06-26T17:30:20.031Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/minimap2/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.084Z","updated_at":"2025-06-26T17:30:20.084Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.139Z","updated_at":"2025-06-26T17:30:20.139Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.192Z","updated_at":"2025-06-26T17:30:20.192Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/bedtools/bamtobed/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.245Z","updated_at":"2025-06-26T17:30:20.245Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/bedtools/bamtobed/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/fastplong/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.297Z","updated_at":"2025-06-26T17:30:20.297Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/fastplong/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/flye/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.349Z","updated_at":"2025-06-26T17:30:20.349Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/flye/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/minimap2/align/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.402Z","updated_at":"2025-06-26T17:30:20.402Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/minimap2/align/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/seqtk/subseq/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.455Z","updated_at":"2025-06-26T17:30:20.455Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/local/seqtk/subseq/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bandage/image/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.507Z","updated_at":"2025-06-26T17:30:20.507Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/bandage/image/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gunzip/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.560Z","updated_at":"2025-06-26T17:30:20.560Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/gunzip/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/medaka/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.612Z","updated_at":"2025-06-26T17:30:20.612Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/medaka/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/minimap2/index/environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-26T17:30:20.665Z","updated_at":"2025-06-26T17:30:20.665Z","repository_link":"https://github.com/silkrp/novoloop/blob/main/modules/nf-core/minimap2/index/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:02.662Z","updated_at":"2025-10-07T08:12:59.577Z","avatar_url":"https://github.com/silkrp.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/30047","html_url":"https://science.ecosyste.ms/projects/30047","bibtex_url":"https://science.ecosyste.ms/projects/30047/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/30047/export.apalike"}