{"id":30246,"name":"protein-reconstruction","description":"Learning to recover orientations from projections in single-particle cryo-EM","url":"https://github.com/jelenabanjac/protein-reconstruction","last_synced_at":"2025-09-05T04:45:33.466Z","repository":{"id":70254756,"uuid":"211159489","full_name":"JelenaBanjac/protein-reconstruction","owner":"JelenaBanjac","description":"Learning to recover orientations from projections in single-particle cryo-EM","archived":false,"fork":false,"pushed_at":"2022-01-30T18:10:03.000Z","size":882693,"stargazers_count":15,"open_issues_count":2,"forks_count":4,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-04-13T20:47:21.061Z","etag":null,"topics":["2d-projections","3d-protein","angle-recovery","astra-toolbox","computer-vision","cryo-em","deep-learning","distance-estimation","images","orientation-recovery","protein","protein-reconstruction","tensorflow"],"latest_commit_sha":null,"homepage":"https://jelenabanjac.com/protein-reconstruction/index.html","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JelenaBanjac.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-09-26T18:47:06.000Z","updated_at":"2024-10-02T10:06:02.000Z","dependencies_parsed_at":"2023-03-04T16:15:30.106Z","dependency_job_id":null,"html_url":"https://github.com/JelenaBanjac/protein-reconstruction","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/JelenaBanjac/protein-reconstruction","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JelenaBanjac%2Fprotein-reconstruction","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JelenaBanjac%2Fprotein-reconstruction/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JelenaBanjac%2Fprotein-reconstruction/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JelenaBanjac%2Fprotein-reconstruction/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JelenaBanjac","download_url":"https://codeload.github.com/JelenaBanjac/protein-reconstruction/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JelenaBanjac%2Fprotein-reconstruction/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273713606,"owners_count":25154612,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"JelenaBanjac","name":"Jelena Banjac","uuid":"13317917","kind":"user","description":"Data Scientist\r\n","email":"","website":"https://jelenabanjac.com","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/13317917?u=fe2ed093eb3c81340550aa01c73159dfbfdb314c\u0026v=4","repositories_count":13,"last_synced_at":"2023-07-31T12:19:16.123Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JelenaBanjac","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-21T09:11:32.202Z","updated_at":"2023-07-31T12:19:16.218Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JelenaBanjac","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JelenaBanjac/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"jelenabanjac/protein-reconstruction","html_url":"https://github.com/jelenabanjac/protein-reconstruction","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T04:44:00.292Z","updated_at":"2025-09-05T04:44:00.292Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jelenabanjac%2Fprotein-reconstruction","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/jelenabanjac%2Fprotein-reconstruction/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10085009,"issues_count":31271208,"pull_requests_count":96321502,"authors_count":10695459,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["2d-projections","3d-protein","angle-recovery","astra-toolbox","computer-vision","cryo-em","deep-learning","distance-estimation","images","orientation-recovery","protein","protein-reconstruction","tensorflow"],"dependencies":[{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-03-04T16:15:29.253Z","updated_at":"2023-03-04T16:15:29.253Z","repository_link":"https://github.com/JelenaBanjac/protein-reconstruction/blob/master/Dockerfile","dependencies":[{"id":7996995994,"package_name":"nvidia/cuda","ecosystem":"docker","requirements":"${CUDA}-cudnn${CUDNN}-devel-ubuntu16.04","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2023-03-04T16:15:29.375Z","updated_at":"2023-03-04T16:15:29.375Z","repository_link":"https://github.com/JelenaBanjac/protein-reconstruction/blob/master/environment.yml","dependencies":[{"id":7996997725,"package_name":"absl-py","ecosystem":"pypi","requirements":"==0.8.1","direct":true,"kind":"runtime","optional":false},{"id":7996997726,"package_name":"astor","ecosystem":"pypi","requirements":"==0.8.0","direct":true,"kind":"runtime","optional":false},{"id":7996997727,"package_name":"cachetools","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":7996997728,"package_name":"gast","ecosystem":"pypi","requirements":"==0.2.2","direct":true,"kind":"runtime","optional":false},{"id":7996997729,"package_name":"google-auth","ecosystem":"pypi","requirements":"==1.7.1","direct":true,"kind":"runtime","optional":false},{"id":7996997730,"package_name":"google-auth-oauthlib","ecosystem":"pypi","requirements":"==0.4.1","direct":true,"kind":"runtime","optional":false},{"id":7996997731,"package_name":"google-pasta","ecosystem":"pypi","requirements":"==0.1.8","direct":true,"kind":"runtime","optional":false},{"id":7996997732,"package_name":"grpcio","ecosystem":"pypi","requirements":"==1.25.0","direct":true,"kind":"runtime","optional":false},{"id":7996997733,"package_name":"h5py","ecosystem":"pypi","requirements":"==2.10.0","direct":true,"kind":"runtime","optional":false},{"id":7996997734,"package_name":"keras-applications","ecosystem":"pypi","requirements":"==1.0.8","direct":true,"kind":"runtime","optional":false},{"id":7996997735,"package_name":"keras-preprocessing","ecosystem":"pypi","requirements":"==1.1.0","direct":true,"kind":"runtime","optional":false},{"id":7996997736,"package_name":"markdown","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":7996997737,"package_name":"numba","ecosystem":"pypi","requirements":"==0.48.0","direct":true,"kind":"runtime","optional":false},{"id":7996997738,"package_name":"oauthlib","ecosystem":"pypi","requirements":"==3.1.0","direct":true,"kind":"runtime","optional":false},{"id":7996997739,"package_name":"opt-einsum","ecosystem":"pypi","requirements":"==3.1.0","direct":true,"kind":"runtime","optional":false},{"id":7996997740,"package_name":"protobuf","ecosystem":"pypi","requirements":"==3.11.0","direct":true,"kind":"runtime","optional":false},{"id":7996997741,"package_name":"pyasn1","ecosystem":"pypi","requirements":"==0.4.8","direct":true,"kind":"runtime","optional":false},{"id":7996997742,"package_name":"pyasn1-modules","ecosystem":"pypi","requirements":"==0.2.7","direct":true,"kind":"runtime","optional":false},{"id":7996997743,"package_name":"requests-oauthlib","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":7996997744,"package_name":"rsa","ecosystem":"pypi","requirements":"==4.0","direct":true,"kind":"runtime","optional":false},{"id":7996997745,"package_name":"tensorflow-gpu","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7996997746,"package_name":"tensorflow-graphics","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7996997747,"package_name":"termcolor","ecosystem":"pypi","requirements":"==1.1.0","direct":true,"kind":"runtime","optional":false},{"id":7996997748,"package_name":"werkzeug","ecosystem":"pypi","requirements":"==0.16.0","direct":true,"kind":"runtime","optional":false},{"id":7996997749,"package_name":"wrapt","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7996997750,"package_name":"jupyter-book","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:02.884Z","updated_at":"2025-10-07T08:13:03.484Z","avatar_url":"https://github.com/JelenaBanjac.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/30246","html_url":"https://science.ecosyste.ms/projects/30246"}