{"id":30251,"name":"minsepie","description":"Modelling insertion efficiency for Prime Insertion Experiments","url":"https://github.com/julianeweller/minsepie","last_synced_at":"2025-09-05T04:44:54.760Z","repository":{"id":38466044,"uuid":"425856818","full_name":"julianeweller/MinsePIE","owner":"julianeweller","description":"Modelling insertion efficiency for Prime Insertion Experiments","archived":false,"fork":false,"pushed_at":"2024-04-01T13:03:15.000Z","size":29091,"stargazers_count":13,"open_issues_count":0,"forks_count":3,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-13T20:47:47.221Z","etag":null,"topics":["bioinformatics","crispr-cas9","gene-editing"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/julianeweller.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-11-08T13:52:21.000Z","updated_at":"2024-07-31T11:27:56.000Z","dependencies_parsed_at":"2023-02-04T03:32:53.227Z","dependency_job_id":"d698cf8b-34e1-4329-9cc4-98e43d7125e7","html_url":"https://github.com/julianeweller/MinsePIE","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/julianeweller/MinsePIE","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2FMinsePIE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2FMinsePIE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2FMinsePIE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2FMinsePIE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/julianeweller","download_url":"https://codeload.github.com/julianeweller/MinsePIE/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2FMinsePIE/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273713606,"owners_count":25154612,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"julianeweller","name":"Juliane Weller","uuid":"46549848","kind":"user","description":"","email":"","website":null,"location":"Cambridge, UK","twitter":"JulianeWeller","company":"Wellcome Sanger Institute","icon_url":"https://avatars.githubusercontent.com/u/46549848?v=4","repositories_count":5,"last_synced_at":"2024-12-06T20:43:50.321Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/julianeweller","funding_links":[],"total_stars":18,"followers":8,"following":12,"created_at":"2022-11-17T00:21:02.202Z","updated_at":"2024-12-06T20:43:50.321Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/julianeweller","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/julianeweller/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"julianeweller/minsepie","html_url":"https://github.com/julianeweller/minsepie","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T04:43:44.294Z","updated_at":"2025-09-05T04:43:44.294Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2Fminsepie","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/julianeweller%2Fminsepie/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10085009,"issues_count":31271208,"pull_requests_count":96321502,"authors_count":10695459,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bioinformatics","crispr-cas9","gene-editing"],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-08-19T18:40:13.528Z","updated_at":"2022-08-19T18:40:13.528Z","repository_link":"https://github.com/julianeweller/MinsePIE/blob/main/setup.py","dependencies":[{"id":2071839614,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2071839615,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=1.3","direct":true,"kind":"runtime","optional":false},{"id":2071839616,"package_name":"regex","ecosystem":"pypi","requirements":"\u003e=2021.8","direct":true,"kind":"runtime","optional":false},{"id":2071839617,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.24","direct":true,"kind":"runtime","optional":false},{"id":2071839618,"package_name":"biopython","ecosystem":"pypi","requirements":"\u003e=1.79","direct":true,"kind":"runtime","optional":false},{"id":2071839619,"package_name":"xgboost","ecosystem":"pypi","requirements":"==1.5.0","direct":true,"kind":"runtime","optional":false},{"id":2071839620,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.5","direct":true,"kind":"runtime","optional":false},{"id":2071839621,"package_name":"datetime","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2071839622,"package_name":"pandarallel","ecosystem":"pypi","requirements":"==1.5.4","direct":true,"kind":"runtime","optional":false},{"id":2071839623,"package_name":"more-itertools","ecosystem":"pypi","requirements":"\u003e=8.12","direct":true,"kind":"runtime","optional":false},{"id":2071839624,"package_name":"viennarna","ecosystem":"pypi","requirements":"\u003e=2.5.0a1","direct":true,"kind":"runtime","optional":false},{"id":2071839625,"package_name":"psutil","ecosystem":"pypi","requirements":"==5.9.0","direct":true,"kind":"runtime","optional":false},{"id":2071839626,"package_name":"more_itertools","ecosystem":"pypi","requirements":"\u003e=8.12.0","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:02.890Z","updated_at":"2025-10-07T08:13:03.591Z","avatar_url":"https://github.com/julianeweller.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1101/2021.11.10.468024","https://doi.org/10.1038/s41587-023-01678-y"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/30251","html_url":"https://science.ecosyste.ms/projects/30251","bibtex_url":"https://science.ecosyste.ms/projects/30251/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/30251/export.apalike"}