{"id":31538,"name":"SNaQ","description":"Julia package for the inference of semi-directed phylogenetic networks under pseudolikelihood model","url":"https://github.com/juliaphylo/snaq.jl","last_synced_at":"2025-09-05T05:10:37.952Z","repository":{"id":257918579,"uuid":"858876717","full_name":"JuliaPhylo/SNaQ.jl","owner":"JuliaPhylo","description":"Julia package for the inference of semi-directed phylogenetic networks under pseudolikelihood model","archived":false,"fork":false,"pushed_at":"2025-08-15T20:00:46.000Z","size":4702,"stargazers_count":3,"open_issues_count":14,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-15T22:33:02.658Z","etag":null,"topics":["compbio","evolution","networks","phylogenetics"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JuliaPhylo.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.bib","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-09-17T17:27:50.000Z","updated_at":"2025-07-10T03:19:09.000Z","dependencies_parsed_at":"2024-10-26T00:36:03.710Z","dependency_job_id":"e120e86e-15af-4138-928c-ca915b9bd782","html_url":"https://github.com/JuliaPhylo/SNaQ.jl","commit_stats":null,"previous_names":["juliaphylo/snaq.jl"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/JuliaPhylo/SNaQ.jl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo","download_url":"https://codeload.github.com/JuliaPhylo/SNaQ.jl/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273713621,"owners_count":25154614,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"JuliaPhylo","name":"JuliaPhylo","uuid":"172437171","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/172437171?v=4","repositories_count":1,"last_synced_at":"2024-06-20T05:53:47.410Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JuliaPhylo","funding_links":[],"total_stars":15,"followers":3,"following":0,"created_at":"2024-06-20T05:53:47.635Z","updated_at":"2024-06-20T05:53:47.635Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo/repositories"},"packages":[{"id":11611540,"name":"SNaQ","ecosystem":"julia","description":"Julia package for the inference of semi-directed phylogenetic networks under pseudolikelihood model","homepage":"","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/JuliaPhylo/SNaQ.jl","keywords_array":["compbio","evolution","networks","phylogenetics"],"namespace":null,"versions_count":1,"first_release_published_at":"2025-05-06T18:04:57.201Z","latest_release_published_at":"2025-05-06T18:04:57.201Z","latest_release_number":"1.0.0","last_synced_at":"2025-08-15T22:50:19.766Z","created_at":"2025-05-06T18:04:56.380Z","updated_at":"2025-08-16T03:15:14.293Z","registry_url":"https://juliahub.com/ui/Packages/General/SNaQ/","install_command":"Pkg.add(\"SNaQ\")","documentation_url":"https://docs.juliahub.com/General/SNaQ/stable/","metadata":{"uuid":"c2bf7a07-44d2-4d11-b5e2-76dc5aa199d6"},"repo_metadata":{"id":257918579,"uuid":"858876717","full_name":"JuliaPhylo/SNaQ.jl","owner":"JuliaPhylo","description":"Julia package for the inference of semi-directed phylogenetic networks under pseudolikelihood model","archived":false,"fork":false,"pushed_at":"2025-08-15T20:00:46.000Z","size":4702,"stargazers_count":3,"open_issues_count":14,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-15T22:33:02.658Z","etag":null,"topics":["compbio","evolution","networks","phylogenetics"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JuliaPhylo.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.bib","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-09-17T17:27:50.000Z","updated_at":"2025-07-10T03:19:09.000Z","dependencies_parsed_at":"2024-10-26T00:36:03.710Z","dependency_job_id":"e120e86e-15af-4138-928c-ca915b9bd782","html_url":"https://github.com/JuliaPhylo/SNaQ.jl","commit_stats":null,"previous_names":["juliaphylo/snaq.jl"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/JuliaPhylo/SNaQ.jl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo","download_url":"https://codeload.github.com/JuliaPhylo/SNaQ.jl/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":270661504,"owners_count":24624110,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-16T02:00:11.002Z","response_time":91,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"JuliaPhylo","name":"JuliaPhylo","uuid":"172437171","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/172437171?v=4","repositories_count":1,"last_synced_at":"2024-06-20T05:53:47.410Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JuliaPhylo","funding_links":[],"total_stars":15,"followers":3,"following":0,"created_at":"2024-06-20T05:53:47.635Z","updated_at":"2024-06-20T05:53:47.635Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JuliaPhylo/repositories"},"tags":[{"name":"v1.0.0","sha":"7b5457aed10ad5ba3aea35fdd9858176686f3268","kind":"tag","published_at":"2025-05-06T17:35:55.000Z","download_url":"https://codeload.github.com/JuliaPhylo/SNaQ.jl/tar.gz/v1.0.0","html_url":"https://github.com/JuliaPhylo/SNaQ.jl/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/JuliaPhylo/SNaQ.jl@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/tags/v1.0.0/manifests"}]},"repo_metadata_updated_at":"2025-08-16T03:15:14.292Z","dependent_packages_count":0,"downloads":29,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":8.411827340486527,"dependent_packages_count":36.26013596527152,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":22.335981652879024},"purl":"pkg:julia/SNaQ","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/julia/SNaQ","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/julia/SNaQ","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/julia/SNaQ/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/SNaQ/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/SNaQ/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/SNaQ/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/SNaQ/related_packages","maintainers":[],"registry":{"name":"juliahub.com","url":"https://juliahub.com","ecosystem":"julia","default":true,"packages_count":12681,"maintainers_count":0,"namespaces_count":0,"keywords_count":7424,"github":"JuliaRegistries","metadata":{"funded_packages_count":856},"icon_url":"https://github.com/JuliaRegistries.png","created_at":"2022-04-19T16:34:08.340Z","updated_at":"2025-09-04T07:04:50.164Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"JuliaPhylo/SNaQ.jl","html_url":"https://github.com/JuliaPhylo/SNaQ.jl","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-29T13:28:17.635Z","updated_at":"2025-09-03T01:43:38.208Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JuliaPhylo%2FSNaQ.jl/issues","issue_labels_count":{"to do":2},"pull_request_labels_count":{"dependencies":2,"github_actions":1},"issue_author_associations_count":{"MEMBER":4,"NONE":1},"pull_request_author_associations_count":{"NONE":4,"MEMBER":1},"issue_authors":{"crsl4":2,"jjustison":1,"cecileane":1,"JuliaTagBot":1},"pull_request_authors":{"dependabot[bot]":2,"jjustison":1,"gaballench":1,"NathanKolbow":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086361,"issues_count":31286210,"pull_requests_count":96411606,"authors_count":10695498,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"to do":1},"past_year_pull_request_labels_count":{"dependencies":2,"github_actions":1},"past_year_issue_author_associations_count":{"MEMBER":1,"NONE":1},"past_year_pull_request_author_associations_count":{"NONE":4,"MEMBER":1},"past_year_issue_authors":{"jjustison":1,"JuliaTagBot":1},"past_year_pull_request_authors":{"dependabot[bot]":2,"gaballench":1,"jjustison":1,"NathanKolbow":1},"maintainers":[{"login":"crsl4","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/crsl4"},{"login":"jjustison","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jjustison"},{"login":"cecileane","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cecileane"}],"active_maintainers":[{"login":"jjustison","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jjustison"}]},"events":{"total":{"ForkEvent":2,"CreateEvent":7,"CommitCommentEvent":10,"ReleaseEvent":1,"IssuesEvent":8,"WatchEvent":4,"DeleteEvent":2,"IssueCommentEvent":27,"MemberEvent":1,"PushEvent":218,"PullRequestReviewEvent":21,"PullRequestReviewCommentEvent":20,"PullRequestEvent":9},"last_year":{"ForkEvent":2,"CreateEvent":7,"CommitCommentEvent":10,"ReleaseEvent":1,"IssuesEvent":8,"WatchEvent":4,"DeleteEvent":2,"IssueCommentEvent":27,"MemberEvent":1,"PushEvent":218,"PullRequestReviewEvent":21,"PullRequestReviewCommentEvent":20,"PullRequestEvent":9}},"keywords":["compbio","evolution","networks","phylogenetics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/CI.yml","sha":null,"kind":"manifest","created_at":"2024-10-17T01:22:13.363Z","updated_at":"2024-10-17T01:22:13.363Z","repository_link":"https://github.com/JuliaPhylo/SNaQ.jl/blob/main/.github/workflows/CI.yml","dependencies":[{"id":20221909037,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":20221909038,"package_name":"julia-actions/setup-julia","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20221909039,"package_name":"julia-actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20221909040,"package_name":"julia-actions/julia-buildpkg","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":20221909041,"package_name":"julia-actions/julia-runtest","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":20221909042,"package_name":"julia-actions/julia-processcoverage","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":20221909043,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":20221909044,"package_name":"julia-actions/julia-docdeploy","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/CompatHelper.yml","sha":null,"kind":"manifest","created_at":"2024-10-17T01:22:13.975Z","updated_at":"2024-10-17T01:22:13.975Z","repository_link":"https://github.com/JuliaPhylo/SNaQ.jl/blob/main/.github/workflows/CompatHelper.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/TagBot.yml","sha":null,"kind":"manifest","created_at":"2024-10-17T01:22:14.460Z","updated_at":"2024-10-17T01:22:14.460Z","repository_link":"https://github.com/JuliaPhylo/SNaQ.jl/blob/main/.github/workflows/TagBot.yml","dependencies":[{"id":20221910303,"package_name":"JuliaRegistries/TagBot","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:04.449Z","updated_at":"2025-10-07T08:13:28.404Z","avatar_url":"https://github.com/JuliaPhylo.png","language":"Julia","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pgen.1005896"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/31538","html_url":"https://science.ecosyste.ms/projects/31538","bibtex_url":"https://science.ecosyste.ms/projects/31538/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/31538/export.apalike"}