{"id":32330,"name":"chimerax","description":"Source code for molecular graphics program UCSF ChimeraX","url":"https://github.com/rbvi/chimerax","last_synced_at":"2025-09-05T05:25:52.409Z","repository":{"id":37403011,"uuid":"294500898","full_name":"RBVI/ChimeraX","owner":"RBVI","description":"Source code for molecular graphics program UCSF ChimeraX","archived":false,"fork":false,"pushed_at":"2025-09-04T15:33:49.000Z","size":126298,"stargazers_count":204,"open_issues_count":58,"forks_count":36,"subscribers_count":8,"default_branch":"develop","last_synced_at":"2025-09-04T17:36:38.978Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://www.rbvi.ucsf.edu/chimerax/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/RBVI.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"License.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":"copyright.txt","agents":null,"dco":null,"cla":null}},"created_at":"2020-09-10T19:14:37.000Z","updated_at":"2025-09-04T15:33:53.000Z","dependencies_parsed_at":"2023-09-27T06:46:53.660Z","dependency_job_id":"6169d79f-3042-4da2-808f-17a60338f401","html_url":"https://github.com/RBVI/ChimeraX","commit_stats":{"total_commits":19694,"total_committers":34,"mean_commits":579.2352941176471,"dds":0.6906672082867878,"last_synced_commit":"06e4d73f7a5f1855ede467b0380286bcfe15314d"},"previous_names":[],"tags_count":29,"template":false,"template_full_name":null,"purl":"pkg:github/RBVI/ChimeraX","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RBVI","download_url":"https://codeload.github.com/RBVI/ChimeraX/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273714090,"owners_count":25154740,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"RBVI","name":"RBVI","uuid":"4623410","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/4623410?v=4","repositories_count":49,"last_synced_at":"2024-03-27T06:43:57.555Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/RBVI","funding_links":[],"total_stars":197,"followers":12,"following":0,"created_at":"2022-11-05T13:22:45.543Z","updated_at":"2024-03-27T06:44:05.472Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RBVI","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RBVI/repositories"},"packages":[],"commits":{"id":1406756,"full_name":"RBVI/ChimeraX","default_branch":"develop","committers":[{"name":"Tom Goddard","email":"goddard@sonic.net","login":null,"count":6092},{"name":"Eric Pettersen","email":"pett@cgl.ucsf.edu","login":null,"count":4998},{"name":"Greg Couch","email":"gregc@cgl.ucsf.edu","login":null,"count":2517},{"name":"Conrad Huang","email":"conrad@cgl.ucsf.edu","login":null,"count":1310},{"name":"Elaine Meng","email":"meng@cgl.ucsf.edu","login":null,"count":1046},{"name":"gregcouch","email":"gregcouch@gmail.com","login":null,"count":694},{"name":"Zach Pearson","email":"zach@zjp.codes","login":null,"count":618},{"name":"Zach Pearson","email":"zjp@cgl.ucsf.edu","login":null,"count":486},{"name":"Tom Goddard","email":"goddard@Toms-MBP.lan","login":null,"count":474},{"name":"Elaine Meng","email":"elainecmeng@gmail.com","login":null,"count":346},{"name":"Tom Goddard","email":"goddard@descartes.cgl.ucsf.edu","login":null,"count":342},{"name":"Tom Goddard","email":"goddard@cgl.ucsf.edu","login":null,"count":330},{"name":"Tom Goddard","email":"goddard@dhcp-169-230-21-233.cgl.ucsf.edu","login":null,"count":243},{"name":"Tom Goddard","email":"goddard@Toms-MBP-3.lan","login":null,"count":90},{"name":"Tom Goddard","email":"goddard@hal2-client8.cgl.ucsf.edu","login":null,"count":31},{"name":"Tom Goddard","email":"goddard@Toms-MacBook-Pro.local","login":null,"count":25},{"name":"Greg Couch","email":"gregc@clemens.cgl.ucsf.edu","login":null,"count":11},{"name":"Tom Goddard","email":"goddard@Toms-iMac-2.local","login":null,"count":9},{"name":"Scooter Morris","email":"scooter@cgl.ucsf.edu","login":null,"count":8},{"name":"Tom Goddard","email":"goddard@Toms-Mac-mini.lan","login":null,"count":4},{"name":"Tom Goddard","email":"goddard@Toms-MacBook-Pro-3.local","login":null,"count":3},{"name":"Conrad Huang","email":"conrad@dhcp-169-230-21-230.cgl.ucsf.edu","login":null,"count":2},{"name":"Tom Goddard","email":"goddard@hal2-client7.cgl.ucsf.edu","login":null,"count":2},{"name":"Conrad Huang","email":"conrad@clemens.cgl.ucsf.edu","login":null,"count":2},{"name":"tferrin","email":"tef@pythagoras.compbio.ucsf.edu","login":null,"count":2},{"name":"Tom Goddard","email":"goddard@hal-169-230-25-113.cgl.ucsf.edu","login":null,"count":1},{"name":"Eric Pettersen","email":"pett@kronos.cgl.ucsf.edu","login":null,"count":1},{"name":"Greg Couch","email":"gregcouch@gail.com","login":null,"count":1},{"name":"Greg Couch","email":"gregc@bear.cgl.ucsf.edu","login":null,"count":1},{"name":"Conrad Huang","email":"conrad@udp085144uds.ucsf.edu","login":null,"count":1},{"name":"Tom Ferrin","email":"tef@cgl.ucsf.edu","login":null,"count":1},{"name":"Tom Goddard","email":"goddard@hal-169-230-25-191.cgl.ucsf.edu","login":null,"count":1},{"name":"Chimera test uid","email":"chimera@crick.cgl.ucsf.edu","login":null,"count":1},{"name":"Tom Goddard","email":"goddard@vpn-169-230-25-25.cgl.ucsf.edu","login":null,"count":1}],"total_commits":19694,"total_committers":34,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":579.2352941176471,"dds":0.6906672082867878,"past_year_committers":[{"name":"Eric Pettersen","email":"pett@cgl.ucsf.edu","login":null,"count":482},{"name":"Zach Pearson","email":"zjp@cgl.ucsf.edu","login":null,"count":283},{"name":"Tom Goddard","email":"goddard@sonic.net","login":null,"count":281},{"name":"Elaine Meng","email":"elainecmeng@gmail.com","login":null,"count":170},{"name":"Zach Pearson","email":"zach@zjp.codes","login":null,"count":159},{"name":"Greg Couch","email":"gregc@cgl.ucsf.edu","login":null,"count":111},{"name":"Tom Goddard","email":"goddard@cgl.ucsf.edu","login":null,"count":27},{"name":"Greg Couch","email":"gregc@bear.cgl.ucsf.edu","login":null,"count":1}],"past_year_total_commits":1514,"past_year_total_committers":8,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":189.25,"past_year_dds":0.6816380449141348,"last_synced_at":"2023-10-25T15:02:12.567Z","last_synced_commit":"06e4d73f7a5f1855ede467b0380286bcfe15314d","created_at":"2023-10-25T14:53:53.650Z","updated_at":"2023-10-25T15:02:12.568Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"RBVI/ChimeraX","html_url":"https://github.com/RBVI/ChimeraX","last_synced_at":"2025-09-03T08:11:29.929Z","status":null,"issues_count":13,"pull_requests_count":138,"avg_time_to_close_issue":832882.3636363636,"avg_time_to_close_pull_request":765783.3783783783,"issues_closed_count":11,"pull_requests_closed_count":74,"pull_request_authors_count":8,"issue_authors_count":11,"avg_comments_per_issue":1.6923076923076923,"avg_comments_per_pull_request":0.30434782608695654,"merged_pull_requests_count":41,"bot_issues_count":0,"bot_pull_requests_count":107,"past_year_issues_count":6,"past_year_pull_requests_count":137,"past_year_avg_time_to_close_issue":861400.8,"past_year_avg_time_to_close_pull_request":767879.9726027397,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":73,"past_year_pull_request_authors_count":7,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":1.8333333333333333,"past_year_avg_comments_per_pull_request":0.30656934306569344,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":107,"past_year_merged_pull_requests_count":40,"created_at":"2025-08-29T11:39:24.260Z","updated_at":"2025-09-03T08:11:29.931Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/RBVI%2FChimeraX/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":107,"python":106,"github_actions":1},"issue_author_associations_count":{"NONE":13},"pull_request_author_associations_count":{"CONTRIBUTOR":125,"NONE":9,"MEMBER":4},"issue_authors":{"RodenLuo":2,"alphataubio":2,"aretaon":1,"galeo":1,"pmaxwellward":1,"fses91":1,"xiao1wen2":1,"MatteoRiva95":1,"s1752729916":1,"dorkylever":1,"knight-hzj":1},"pull_request_authors":{"dependabot[bot]":107,"pRottinghuis":20,"zjp":4,"alphataubio":2,"RodenLuo":2,"hfswetton":1,"benmwebb":1,"odcambc":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086255,"issues_count":31275313,"pull_requests_count":96382867,"authors_count":10695584,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":107,"python":106,"github_actions":1},"past_year_issue_author_associations_count":{"NONE":6},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":125,"NONE":8,"MEMBER":4},"past_year_issue_authors":{"alphataubio":1,"aretaon":1,"galeo":1,"MatteoRiva95":1,"pmaxwellward":1,"xiao1wen2":1},"past_year_pull_request_authors":{"dependabot[bot]":107,"pRottinghuis":20,"zjp":4,"RodenLuo":2,"alphataubio":2,"odcambc":1,"hfswetton":1},"maintainers":[{"login":"zjp","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zjp"}],"active_maintainers":[{"login":"zjp","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zjp"}]},"events":null,"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/nightly.yml","sha":null,"kind":"manifest","created_at":"2023-09-27T06:46:52.949Z","updated_at":"2023-09-27T06:46:52.949Z","repository_link":"https://github.com/RBVI/ChimeraX/blob/develop/.github/workflows/nightly.yml","dependencies":[{"id":13970925196,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13970925197,"package_name":"msys2/setup-msys2","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"homebrew","filepath":"Brewfile","sha":null,"kind":"manifest","created_at":"2023-09-27T06:46:53.331Z","updated_at":"2023-09-27T06:46:53.331Z","repository_link":"https://github.com/RBVI/ChimeraX/blob/develop/Brewfile","dependencies":[{"id":13970926108,"package_name":"netcdf","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":13970926452,"package_name":"hdf5","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":13970926485,"package_name":"lz4","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":13970926486,"package_name":"c-blosc","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":13970926487,"package_name":"openblas","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":13970926491,"package_name":"python@3.10","ecosystem":"homebrew","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":9.094705028377259,"created_at":"2025-09-04T15:51:05.406Z","updated_at":"2025-10-07T08:13:43.325Z","avatar_url":"https://github.com/RBVI.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/32330","html_url":"https://science.ecosyste.ms/projects/32330","bibtex_url":"https://science.ecosyste.ms/projects/32330/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/32330/export.apalike"}