{"id":32436,"name":"nanotax","description":"a pipeline for the characterization of microbial communities with Nanopore","url":"https://github.com/jacquelinealdridge/nanotax","last_synced_at":"2025-09-05T05:27:11.198Z","repository":{"id":264516984,"uuid":"890513358","full_name":"JacquelineAldridge/nanotax","owner":"JacquelineAldridge","description":"a pipeline for the characterization of microbial communities with Nanopore","archived":false,"fork":false,"pushed_at":"2025-06-03T19:40:58.000Z","size":161,"stargazers_count":1,"open_issues_count":1,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-01T04:07:23.329Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JacquelineAldridge.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-11-18T17:42:17.000Z","updated_at":"2025-05-23T18:29:52.000Z","dependencies_parsed_at":"2025-05-14T22:46:23.573Z","dependency_job_id":null,"html_url":"https://github.com/JacquelineAldridge/nanotax","commit_stats":null,"previous_names":["jacquelinealdridge/nanotax"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/JacquelineAldridge/nanotax","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JacquelineAldridge","download_url":"https://codeload.github.com/JacquelineAldridge/nanotax/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273714313,"owners_count":25154789,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"JacquelineAldridge","name":null,"uuid":"82848029","kind":"user","description":null,"email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/82848029?v=4","repositories_count":1,"last_synced_at":"2024-04-05T21:21:42.921Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/JacquelineAldridge","funding_links":[],"total_stars":0,"followers":2,"following":0,"created_at":"2024-04-05T21:21:43.066Z","updated_at":"2024-04-05T21:21:43.066Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JacquelineAldridge","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JacquelineAldridge/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"JacquelineAldridge/nanotax","html_url":"https://github.com/JacquelineAldridge/nanotax","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T05:25:23.472Z","updated_at":"2025-09-03T03:48:21.868Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/JacquelineAldridge%2Fnanotax/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":5,"COLLABORATOR":1},"issue_authors":{},"pull_request_authors":{"JacquelineAldridge":5,"dialvarezs":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086255,"issues_count":31275313,"pull_requests_count":96382867,"authors_count":10695584,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":5,"COLLABORATOR":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"JacquelineAldridge":5,"dialvarezs":1},"maintainers":[{"login":"JacquelineAldridge","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JacquelineAldridge"},{"login":"dialvarezs","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dialvarezs"}],"active_maintainers":[{"login":"JacquelineAldridge","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/JacquelineAldridge"},{"login":"dialvarezs","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dialvarezs"}]},"events":{"total":{"ReleaseEvent":1,"WatchEvent":1,"MemberEvent":1,"PublicEvent":1,"PushEvent":13,"PullRequestEvent":13,"ForkEvent":2,"CreateEvent":3},"last_year":{"ReleaseEvent":1,"WatchEvent":1,"MemberEvent":1,"PublicEvent":1,"PushEvent":13,"PullRequestEvent":13,"ForkEvent":2,"CreateEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:10.592Z","updated_at":"2024-11-25T04:18:10.592Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/branch.yml","dependencies":[{"id":20883629624,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:10.682Z","updated_at":"2024-11-25T04:18:10.682Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/ci.yml","dependencies":[{"id":20883629631,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20883629632,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20883629788,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":20883629793,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"a4260408e20b96e80095f42ff7f1a15b27dd94ca","direct":true,"kind":"composite","optional":false},{"id":20883630203,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:11.433Z","updated_at":"2024-11-25T04:18:11.433Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":20883630204,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:11.539Z","updated_at":"2024-11-25T04:18:11.539Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":20883630205,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20883630206,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":20883630207,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20883630208,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:11.637Z","updated_at":"2024-11-25T04:18:11.637Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":20883630539,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20883630540,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":20883631305,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:12.460Z","updated_at":"2024-11-25T04:18:12.460Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/linting.yml","dependencies":[{"id":20883631346,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20883631348,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20883631350,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20883631353,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"1.1.0","direct":true,"kind":"composite","optional":false},{"id":20883631748,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:13.138Z","updated_at":"2024-11-25T04:18:13.138Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":20883631956,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"bf251b5aa9c2f7eeb574a96ee720e24f801b7c11","direct":true,"kind":"composite","optional":false},{"id":20883633214,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:13.615Z","updated_at":"2024-11-25T04:18:13.615Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/.github/workflows/template_version_comment.yml","dependencies":[{"id":20883633348,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20883633351,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":20883634474,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.002Z","updated_at":"2024-11-25T04:18:17.002Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/filtlong/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.066Z","updated_at":"2024-11-25T04:18:17.066Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/filtlong/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/mmseqs/createdb/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.122Z","updated_at":"2024-11-25T04:18:17.122Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/mmseqs/createdb/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/mmseqs/easysearch/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.176Z","updated_at":"2024-11-25T04:18:17.176Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/mmseqs/easysearch/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.238Z","updated_at":"2024-11-25T04:18:17.238Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/nanoq/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.293Z","updated_at":"2024-11-25T04:18:17.293Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/nanoq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.351Z","updated_at":"2024-11-25T04:18:17.351Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.413Z","updated_at":"2024-11-25T04:18:17.413Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-11-25T04:18:17.471Z","updated_at":"2024-11-25T04:18:17.471Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.376Z","updated_at":"2025-05-14T22:46:21.376Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/filtlong/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.419Z","updated_at":"2025-05-14T22:46:21.419Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/filtlong/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/mmseqs/createdb/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.690Z","updated_at":"2025-05-14T22:46:21.690Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/mmseqs/createdb/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/mmseqs/easysearch/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.734Z","updated_at":"2025-05-14T22:46:21.734Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/mmseqs/easysearch/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.778Z","updated_at":"2025-05-14T22:46:21.778Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/nanoq/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-14T22:46:21.828Z","updated_at":"2025-05-14T22:46:21.828Z","repository_link":"https://github.com/JacquelineAldridge/nanotax/blob/main/modules/nf-core/nanoq/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:05.526Z","updated_at":"2025-10-07T08:13:45.693Z","avatar_url":"https://github.com/JacquelineAldridge.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/32436","html_url":"https://science.ecosyste.ms/projects/32436","bibtex_url":"https://science.ecosyste.ms/projects/32436/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/32436/export.apalike"}