{"id":32585,"name":"nanoseq","description":"Nanopore demultiplexing, QC and alignment pipeline","url":"https://github.com/nf-core/nanoseq","last_synced_at":"2025-09-05T05:30:13.728Z","repository":{"id":35169265,"uuid":"207292537","full_name":"nf-core/nanoseq","owner":"nf-core","description":"Nanopore demultiplexing, QC and alignment pipeline","archived":false,"fork":false,"pushed_at":"2025-07-08T11:38:37.000Z","size":7251,"stargazers_count":203,"open_issues_count":55,"forks_count":98,"subscribers_count":152,"default_branch":"master","last_synced_at":"2025-07-08T12:44:36.570Z","etag":null,"topics":["alignment","demultiplexing","nanopore","nextflow","nf-core","pipeline","qc","workflow"],"latest_commit_sha":null,"homepage":"https://nf-co.re/nanoseq","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"csawye01/nf-core-nanodemux","license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-09-09T11:23:29.000Z","updated_at":"2025-06-18T12:45:01.000Z","dependencies_parsed_at":"2024-01-29T17:13:36.248Z","dependency_job_id":"4bce111e-b521-4d22-9fdd-e2bf293a9cf7","html_url":"https://github.com/nf-core/nanoseq","commit_stats":{"total_commits":1316,"total_committers":26,"mean_commits":50.61538461538461,"dds":0.5820668693009119,"last_synced_commit":"6e563e54362cddb8e48d15c156251708c22d0e8d"},"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/nanoseq","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/nanoseq/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273715345,"owners_count":25155022,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":[],"commits":{"id":1317694,"full_name":"nf-core/nanoseq","default_branch":"master","committers":[{"name":"drpatelh","email":"drhpatel@gmail.com","count":550},{"name":"Yuk Kei Wan","email":"41866052+yuukiiwa@users.noreply.github.com","count":255},{"name":"lwratten","email":"z5164169@unsw.edu.au","count":79},{"name":"Chelsea","email":"chelseakarasawyer@gmail.com","count":69},{"name":"Chris Hakkaart","email":"christopher.hakkaart@med.uni-tuebingen.de","count":60},{"name":"yuukiiwa","email":"ywan6@alumni.jh.edu","count":58},{"name":"Yuk Kei Wan","email":"ywan6@jhu.edu","count":57},{"name":"Laura Wratten","email":"37123979+lwratten@users.noreply.github.com","count":44},{"name":"Chen Ying","email":"chen_ying@gis.a-star.edu.sg","count":33},{"name":"nf-core-bot","email":"core@nf-co.re","count":22},{"name":"Chris Hakkaart","email":"chris.hakkaart@seqera.io","count":22},{"name":"Christopher Hakkaart","email":"ahhakkc1@imgag.de","count":11},{"name":"Harshil Patel","email":"drpatelh@users.noreply.github.com","count":9},{"name":"lwratten","email":"laura@GISPC864.A-GIS.shared-svc.local","count":9},{"name":"ekushele","email":"efratkush@gmail.com","count":7},{"name":"Johannes Alneberg","email":"johannes.alneberg@scilifelab.se","count":7},{"name":"Harshil Patel","email":"drpatelhh@gmail.com","count":5},{"name":"Venkat Malladi","email":"vmalladi@microsoft.com","count":5},{"name":"Johannes Alneberg","email":"alneberg@kth.se","count":4},{"name":"MaxUlysse","email":"max.u.garcia@gmail.com","count":3},{"name":"christopher-hakkaart","email":"christopher-hakkaart@med.uni-tuebingen.de","count":2},{"name":"runner","email":"runner@fv-az60","count":1},{"name":"yukkei","email":"yukkei@yukkeis-Mini.lan","count":1},{"name":"Daniel Schreyer","email":"2592722S@student.gla.ac.uk","count":1},{"name":"kevinmenden","email":"kevin.menden@t-online.de","count":1},{"name":"sawyerc","email":"sawyerc@ca170.camp.thecrick.org","count":1}],"total_commits":1316,"total_committers":26,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":50.61538461538461,"dds":0.5820668693009119,"past_year_committers":[{"name":"Chris Hakkaart","email":"chris.hakkaart@seqera.io","count":22},{"name":"Yuk Kei Wan","email":"41866052+yuukiiwa@users.noreply.github.com","count":19},{"name":"Yuk Kei Wan","email":"ywan6@jhu.edu","count":11},{"name":"nf-core-bot","email":"core@nf-co.re","count":5},{"name":"Daniel Schreyer","email":"2592722S@student.gla.ac.uk","count":1},{"name":"yuukiiwa","email":"ywan6@alumni.jh.edu","count":1},{"name":"Maxime U. Garcia","email":"max.u.garcia@gmail.com","count":1}],"past_year_total_commits":60,"past_year_total_committers":7,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":8.571428571428571,"past_year_dds":0.6333333333333333,"last_synced_at":"2023-11-04T18:34:12.828Z","last_synced_commit":"6e563e54362cddb8e48d15c156251708c22d0e8d","created_at":"2023-06-15T18:12:13.242Z","updated_at":"2023-11-04T18:34:12.829Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"nf-core/nanoseq","html_url":"https://github.com/nf-core/nanoseq","last_synced_at":"2025-08-31T12:30:39.459Z","status":null,"issues_count":49,"pull_requests_count":89,"avg_time_to_close_issue":10778807.7,"avg_time_to_close_pull_request":1730446.738095238,"issues_closed_count":20,"pull_requests_closed_count":84,"pull_request_authors_count":15,"issue_authors_count":39,"avg_comments_per_issue":1.653061224489796,"avg_comments_per_pull_request":1.1910112359550562,"merged_pull_requests_count":50,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":13,"past_year_pull_requests_count":18,"past_year_avg_time_to_close_issue":39385.0,"past_year_avg_time_to_close_pull_request":4781452.928571428,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":14,"past_year_pull_request_authors_count":7,"past_year_issue_authors_count":8,"past_year_avg_comments_per_issue":0.07692307692307693,"past_year_avg_comments_per_pull_request":0.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2023-06-15T18:12:45.584Z","updated_at":"2025-09-03T04:58:16.674Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fnanoseq/issues","issue_labels_count":{"bug":29,"enhancement":20,"invalid":1},"pull_request_labels_count":{"bug":4,"enhancement":1},"issue_author_associations_count":{"NONE":53,"MEMBER":4,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"MEMBER":50,"CONTRIBUTOR":37,"NONE":16},"issue_authors":{"mlgosh":6,"Eric-CH-Chen":2,"nick-youngblut":2,"FranBonath":2,"xmeng":2,"matthewstuartedwards":2,"benbfly":2,"sheucke":2,"Salome-Brunon":1,"ekushele":1,"christopher-hakkaart":1,"jlandry69":1,"jen-reeve":1,"fbndr98":1,"junaruga":1,"xeniaroda":1,"rugilemat":1,"callumjethomas":1,"CormacKinsella":1,"gzentner":1,"CHENAO-QIAN":1,"rajithadp":1,"ktrappe":1,"bounlu":1,"mvheetve":1,"sunsetyerin":1,"paulmenzel":1,"pcrxn":1,"yinshiyi":1,"mazzalab":1,"mgp2022":1,"nschan":1,"pditommaso":1,"tzvi909":1,"DrOllyGomez":1,"usama-khan1998":1,"criphg":1,"MustafaElshani":1,"asalhab":1,"mattdmem":1,"Stakaitis":1,"marcDabad":1,"maxulysse":1,"slam2049":1,"pcantalupo":1,"cvriehl":1},"pull_request_authors":{"yuukiiwa":41,"nf-core-bot":23,"christopher-hakkaart":19,"tzvi909":3,"Salome-Brunon":2,"ekushele":1,"maxulysse":1,"nourmahfel":1,"matthewstuartedwards":1,"tahirdme":1,"mazzalab":1,"eduard-watchmaker":1,"DSchreyer":1,"julietmWM":1,"jonathangoeke":1,"bounlu":1,"Jordthomas93":1,"LaurenceKuhl":1,"RareSeas-Asimov":1,"adamrtalbot":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086181,"issues_count":31270050,"pull_requests_count":96366014,"authors_count":10695620,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":9,"bug":6},"past_year_pull_request_labels_count":{"bug":3,"enhancement":1},"past_year_issue_author_associations_count":{"NONE":19},"past_year_pull_request_author_associations_count":{"MEMBER":14,"NONE":10,"CONTRIBUTOR":2},"past_year_issue_authors":{"mlgosh":6,"callumjethomas":1,"CormacKinsella":1,"cvriehl":1,"fbndr98":1,"jen-reeve":1,"jlandry69":1,"mazzalab":1,"Salome-Brunon":1,"slam2049":1,"tzvi909":1,"usama-khan1998":1,"xeniaroda":1,"xmeng":1},"past_year_pull_request_authors":{"yuukiiwa":8,"nf-core-bot":8,"tzvi909":3,"Salome-Brunon":2,"mazzalab":1,"tahirdme":1,"julietmWM":1,"eduard-watchmaker":1,"nourmahfel":1},"maintainers":[{"login":"nf-core-bot","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"christopher-hakkaart","count":20,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/christopher-hakkaart"},{"login":"yuukiiwa","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yuukiiwa"},{"login":"FranBonath","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/FranBonath"},{"login":"maxulysse","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"},{"login":"jonathangoeke","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonathangoeke"}],"active_maintainers":[{"login":"nf-core-bot","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"yuukiiwa","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/yuukiiwa"}]},"events":{"total":{"IssuesEvent":20,"WatchEvent":26,"DeleteEvent":26,"IssueCommentEvent":26,"PushEvent":43,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":4,"PullRequestEvent":36,"ForkEvent":20,"CreateEvent":20},"last_year":{"IssuesEvent":20,"WatchEvent":26,"DeleteEvent":26,"IssueCommentEvent":26,"PushEvent":43,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":4,"PullRequestEvent":36,"ForkEvent":20,"CreateEvent":20}},"keywords":["alignment","demultiplexing","nanopore","nextflow","nf-core","pipeline","qc","workflow"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:29.892Z","updated_at":"2023-01-15T15:09:29.892Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":6927407134,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:29.914Z","updated_at":"2023-01-15T15:09:29.914Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":6927407135,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:29.939Z","updated_at":"2023-01-15T15:09:29.939Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/branch.yml","dependencies":[{"id":6927407136,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:29.984Z","updated_at":"2023-01-15T15:09:29.984Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/ci.yml","dependencies":[{"id":6927407137,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:30.020Z","updated_at":"2023-01-15T15:09:30.020Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":6927407138,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6927407139,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:30.070Z","updated_at":"2023-01-15T15:09:30.070Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/linting.yml","dependencies":[{"id":6927407140,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6927407141,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6927407142,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":6927407143,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-01-15T15:09:30.135Z","updated_at":"2023-01-15T15:09:30.135Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":6927407144,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6927407145,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:05.577Z","updated_at":"2023-09-23T14:33:05.577Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/bcftools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:05.759Z","updated_at":"2023-09-23T14:33:05.759Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:06.179Z","updated_at":"2023-09-23T14:33:06.179Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:06.537Z","updated_at":"2023-09-23T14:33:06.537Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/nanolyse/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:06.904Z","updated_at":"2023-09-23T14:33:06.904Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/nanolyse/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/nanoplot/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:07.151Z","updated_at":"2023-09-23T14:33:07.151Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/nanoplot/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/faidx/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:07.581Z","updated_at":"2023-09-23T14:33:07.581Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/faidx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/flagstat/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:07.999Z","updated_at":"2023-09-23T14:33:07.999Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/flagstat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/idxstats/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:08.322Z","updated_at":"2023-09-23T14:33:08.322Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/idxstats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:09.085Z","updated_at":"2023-09-23T14:33:09.085Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:09.515Z","updated_at":"2023-09-23T14:33:09.515Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:09.793Z","updated_at":"2023-09-23T14:33:09.793Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/samtools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/stringtie/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:10.027Z","updated_at":"2023-09-23T14:33:10.027Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/stringtie/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgzip/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:10.627Z","updated_at":"2023-09-23T14:33:10.627Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/tabix/bgzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgziptabix/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:10.882Z","updated_at":"2023-09-23T14:33:10.882Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/tabix/bgziptabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/tabix/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:11.129Z","updated_at":"2023-09-23T14:33:11.129Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/tabix/tabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:11.342Z","updated_at":"2023-09-23T14:33:11.342Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-23T14:33:11.696Z","updated_at":"2023-09-23T14:33:11.696Z","repository_link":"https://github.com/nf-core/nanoseq/blob/master/pyproject.toml","dependencies":[]}],"score":8.8110561229431,"created_at":"2025-09-04T15:51:05.703Z","updated_at":"2025-10-07T08:13:48.556Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.3697959","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["atac-seq","chromatin-accessibiity"],"project_url":"https://science.ecosyste.ms/api/v1/projects/32585","html_url":"https://science.ecosyste.ms/projects/32585","bibtex_url":"https://science.ecosyste.ms/projects/32585/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/32585/export.apalike"}