{"id":32701,"name":"references","description":"nf-core/references is a bioinformatics pipeline that build references, for multiple use cases","url":"https://github.com/nf-core/references","last_synced_at":"2025-09-05T05:33:25.157Z","repository":{"id":211213425,"uuid":"726307164","full_name":"nf-core/references","owner":"nf-core","description":"nf-core/references is a bioinformatics pipeline that build references, for multiple use cases","archived":false,"fork":false,"pushed_at":"2025-08-28T16:41:28.000Z","size":1376,"stargazers_count":18,"open_issues_count":25,"forks_count":5,"subscribers_count":190,"default_branch":"main","last_synced_at":"2025-08-28T23:31:48.854Z","etag":null,"topics":["genome","nextflow","nf-core","pipeline","references","reproducibility","reproducible-research","reproducible-science","workflow"],"latest_commit_sha":null,"homepage":"https://nf-co.re/references","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-12-02T02:13:29.000Z","updated_at":"2025-08-22T06:34:02.000Z","dependencies_parsed_at":null,"dependency_job_id":"a305e9b3-111a-4dea-8633-6f85d5e69bcc","html_url":"https://github.com/nf-core/references","commit_stats":null,"previous_names":["emiller88/jgenomes","nf-core/references"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/references","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/references/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273716412,"owners_count":25155241,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"nf-core/references","html_url":"https://github.com/nf-core/references","last_synced_at":"2025-08-31T09:07:39.071Z","status":null,"issues_count":11,"pull_requests_count":36,"avg_time_to_close_issue":23982030.0,"avg_time_to_close_pull_request":476357.0,"issues_closed_count":2,"pull_requests_closed_count":23,"pull_request_authors_count":2,"issue_authors_count":5,"avg_comments_per_issue":0.18181818181818182,"avg_comments_per_pull_request":0.3055555555555556,"merged_pull_requests_count":21,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":10,"past_year_pull_requests_count":36,"past_year_avg_time_to_close_issue":10462702.0,"past_year_avg_time_to_close_pull_request":476357.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":23,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":0.1,"past_year_avg_comments_per_pull_request":0.3055555555555556,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":21,"created_at":"2025-08-29T12:22:15.130Z","updated_at":"2025-09-03T06:41:13.724Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Freferences/issues","issue_labels_count":{"enhancement":13},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":15,"NONE":4,"COLLABORATOR":4,"CONTRIBUTOR":3},"pull_request_author_associations_count":{"MEMBER":75,"COLLABORATOR":2,"NONE":1},"issue_authors":{"maxulysse":15,"edmundmiller":7,"allthingsgenome":1,"nvnieuwk":1,"matthdsm":1,"jen-reeve":1},"pull_request_authors":{"maxulysse":74,"edmundmiller":2,"ewels":1,"nvnieuwk":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086183,"issues_count":31279889,"pull_requests_count":96394260,"authors_count":10695968,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":13},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":12,"NONE":3,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"MEMBER":72,"NONE":1},"past_year_issue_authors":{"maxulysse":12,"allthingsgenome":1,"edmundmiller":1,"jen-reeve":1,"matthdsm":1},"past_year_pull_request_authors":{"maxulysse":72,"nvnieuwk":1},"maintainers":[{"login":"maxulysse","count":89,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"},{"login":"edmundmiller","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/edmundmiller"},{"login":"ewels","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ewels"}],"active_maintainers":[{"login":"maxulysse","count":84,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"}]},"events":{"total":{"CreateEvent":9,"ReleaseEvent":1,"IssuesEvent":25,"WatchEvent":12,"DeleteEvent":6,"IssueCommentEvent":32,"PushEvent":104,"PullRequestReviewEvent":190,"PullRequestReviewCommentEvent":160,"PullRequestEvent":130,"ForkEvent":1},"last_year":{"CreateEvent":9,"ReleaseEvent":1,"IssuesEvent":25,"WatchEvent":12,"DeleteEvent":6,"IssueCommentEvent":32,"PushEvent":104,"PullRequestReviewEvent":190,"PullRequestReviewCommentEvent":160,"PullRequestEvent":130,"ForkEvent":1}},"keywords":["genome","nextflow","nf-core","pipeline","references","reproducibility","reproducible-research","reproducible-science","workflow"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:51:05.869Z","updated_at":"2025-10-07T08:13:50.775Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/32701","html_url":"https://science.ecosyste.ms/projects/32701","bibtex_url":"https://science.ecosyste.ms/projects/32701/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/32701/export.apalike"}