{"id":32918,"name":"vcftocounts","description":"Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.","url":"https://github.com/qbic-pipelines/vcftocounts","last_synced_at":"2025-09-05T05:38:19.251Z","repository":{"id":266309871,"uuid":"897994801","full_name":"qbic-pipelines/vcftocounts","owner":"qbic-pipelines","description":"Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.","archived":false,"fork":false,"pushed_at":"2025-07-14T09:46:56.000Z","size":1297,"stargazers_count":1,"open_issues_count":2,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-07-14T12:36:22.296Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/qbic-pipelines.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-12-03T15:48:51.000Z","updated_at":"2025-04-16T08:24:22.000Z","dependencies_parsed_at":"2025-04-11T12:39:23.463Z","dependency_job_id":"4b5fe836-5a94-4b22-a83a-98dfae134e75","html_url":"https://github.com/qbic-pipelines/vcftocounts","commit_stats":null,"previous_names":["famosab/vcftomat","qbic-pipelines/vcftomat"],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/qbic-pipelines/vcftocounts","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines","download_url":"https://codeload.github.com/qbic-pipelines/vcftocounts/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273717577,"owners_count":25155482,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"qbic-pipelines","name":"QBiC (qbic-pipelines)","uuid":"62887070","kind":"organization","description":"Bioinformatics analysis pipelines at QBiC","email":"support@qbic.zendesk.com","website":"https://qbic.life","location":"University of Tübingen","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/62887070?v=4","repositories_count":12,"last_synced_at":"2023-03-04T02:52:48.011Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/qbic-pipelines","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T08:34:03.510Z","updated_at":"2023-03-04T02:52:48.039Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"qbic-pipelines/vcftocounts","html_url":"https://github.com/qbic-pipelines/vcftocounts","last_synced_at":"2025-08-31T16:59:31.417Z","status":null,"issues_count":0,"pull_requests_count":14,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":312041.0,"issues_closed_count":0,"pull_requests_closed_count":11,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.42857142857142855,"merged_pull_requests_count":11,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":14,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":312041.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":11,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.42857142857142855,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":11,"created_at":"2025-08-29T19:02:02.632Z","updated_at":"2025-08-31T16:59:31.419Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvcftocounts/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"COLLABORATOR":13},"issue_authors":{},"pull_request_authors":{"famosab":13},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086183,"issues_count":31279889,"pull_requests_count":96394260,"authors_count":10695968,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"COLLABORATOR":13},"past_year_issue_authors":{},"past_year_pull_request_authors":{"famosab":13},"maintainers":[{"login":"famosab","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/famosab"}],"active_maintainers":[{"login":"famosab","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/famosab"}]},"events":{"total":{"ReleaseEvent":2,"IssueCommentEvent":5,"PushEvent":12,"PullRequestReviewCommentEvent":53,"PullRequestReviewEvent":45,"PullRequestEvent":21,"CreateEvent":2},"last_year":{"ReleaseEvent":2,"IssueCommentEvent":5,"PushEvent":12,"PullRequestReviewCommentEvent":53,"PullRequestReviewEvent":45,"PullRequestEvent":21,"CreateEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.257Z","updated_at":"2024-12-03T16:51:23.257Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/branch.yml","dependencies":[{"id":21020758573,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.342Z","updated_at":"2024-12-03T16:51:23.342Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/ci.yml","dependencies":[{"id":21020758595,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21020758596,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21020758597,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":21020758599,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"a4260408e20b96e80095f42ff7f1a15b27dd94ca","direct":true,"kind":"composite","optional":false},{"id":21020758601,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.504Z","updated_at":"2024-12-03T16:51:23.504Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":21020758610,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.594Z","updated_at":"2024-12-03T16:51:23.594Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/download_pipeline.yml","dependencies":[{"id":21020758613,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21020758614,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":21020758615,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":21020758616,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.661Z","updated_at":"2024-12-03T16:51:23.661Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":21020758624,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21020758625,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":21020758626,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.784Z","updated_at":"2024-12-03T16:51:23.784Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/linting.yml","dependencies":[{"id":21020758634,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21020758635,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":21020758636,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21020758637,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"1.1.0","direct":true,"kind":"composite","optional":false},{"id":21020758639,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:23.943Z","updated_at":"2024-12-03T16:51:23.943Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":21020758640,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"bf251b5aa9c2f7eeb574a96ee720e24f801b7c11","direct":true,"kind":"composite","optional":false},{"id":21020758641,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:24.012Z","updated_at":"2024-12-03T16:51:24.012Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/.github/workflows/template_version_comment.yml","dependencies":[{"id":21020758654,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":21020758655,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":21020758656,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:24.209Z","updated_at":"2024-12-03T16:51:24.209Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:24.260Z","updated_at":"2024-12-03T16:51:24.260Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:24.310Z","updated_at":"2024-12-03T16:51:24.310Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-03T16:51:24.360Z","updated_at":"2024-12-03T16:51:24.360Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-16T15:54:05.992Z","updated_at":"2024-12-16T15:54:05.992Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/genotypegvcfs/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-16T15:54:06.036Z","updated_at":"2024-12-16T15:54:06.036Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/gatk4/genotypegvcfs/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/tabix/meta.yml","sha":null,"kind":"manifest","created_at":"2024-12-16T15:54:06.091Z","updated_at":"2024-12-16T15:54:06.091Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/tabix/tabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/concat/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T11:37:18.244Z","updated_at":"2025-01-17T11:37:18.244Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/concat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/reheader/meta.yml","sha":null,"kind":"manifest","created_at":"2025-01-17T11:37:18.317Z","updated_at":"2025-01-17T11:37:18.317Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/reheader/meta.yml","dependencies":[]},{"ecosystem":"conda","filepath":"modules/nf-core/bcftools/merge/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:12.292Z","updated_at":"2025-04-11T12:39:12.292Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/merge/environment.yml","dependencies":[{"id":22640570097,"package_name":"bcftools","ecosystem":"conda","requirements":"1.20.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/gatk4/genotypegvcfs/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:12.975Z","updated_at":"2025-04-11T12:39:12.975Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/gatk4/genotypegvcfs/environment.yml","dependencies":[{"id":22640570110,"package_name":"gatk4","ecosystem":"conda","requirements":"4.6.1.0.*","direct":true,"kind":"runtime","optional":false},{"id":22640570141,"package_name":"gcnvkernel","ecosystem":"conda","requirements":"0.9.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/tabix/tabix/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:13.922Z","updated_at":"2025-04-11T12:39:13.922Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/tabix/tabix/environment.yml","dependencies":[{"id":22640570162,"package_name":"htslib","ecosystem":"conda","requirements":"1.20.*","direct":true,"kind":"runtime","optional":false},{"id":22640570178,"package_name":"tabix","ecosystem":"conda","requirements":"1.11.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/annotate/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:14.956Z","updated_at":"2025-04-11T12:39:14.956Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/annotate/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/view/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:15.080Z","updated_at":"2025-04-11T12:39:15.080Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/view/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/vcf2counts/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:15.434Z","updated_at":"2025-04-11T12:39:15.434Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/local/vcf2counts/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/annotate/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:15.612Z","updated_at":"2025-04-11T12:39:15.612Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/annotate/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/concat/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:15.725Z","updated_at":"2025-04-11T12:39:15.725Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/concat/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/reheader/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:15.803Z","updated_at":"2025-04-11T12:39:15.803Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/reheader/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/view/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:16.147Z","updated_at":"2025-04-11T12:39:16.147Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/bcftools/view/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-11T12:39:16.630Z","updated_at":"2025-04-11T12:39:16.630Z","repository_link":"https://github.com/qbic-pipelines/vcftocounts/blob/master/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:06.132Z","updated_at":"2025-10-07T08:13:54.895Z","avatar_url":"https://github.com/qbic-pipelines.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.14616650","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/32918","html_url":"https://science.ecosyste.ms/projects/32918","bibtex_url":"https://science.ecosyste.ms/projects/32918/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/32918/export.apalike"}