{"id":33370,"name":"mynfpipeline","description":"My first nf-core pipeline.","url":"https://github.com/sakinasaif/mynfpipeline","last_synced_at":"2025-09-05T05:49:30.502Z","repository":{"id":283382149,"uuid":"804522150","full_name":"sakinasaif/mynfpipeline","owner":"sakinasaif","description":"My first nf-core pipeline.","archived":false,"fork":false,"pushed_at":"2024-05-22T20:18:19.000Z","size":304,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-20T00:27:53.465Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sakinasaif.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-22T18:41:09.000Z","updated_at":"2024-05-22T19:04:14.000Z","dependencies_parsed_at":"2025-03-20T00:28:12.876Z","dependency_job_id":null,"html_url":"https://github.com/sakinasaif/mynfpipeline","commit_stats":null,"previous_names":["sakinasaif/mynfpipeline"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/sakinasaif/mynfpipeline","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sakinasaif","download_url":"https://codeload.github.com/sakinasaif/mynfpipeline/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273718344,"owners_count":25155486,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"sakinasaif","name":"Sakina Saif","uuid":"8040861","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/8040861?u=346d50cfd382101209eb2b8531d57a45e563baeb\u0026v=4","repositories_count":1,"last_synced_at":"2025-03-20T00:24:23.664Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sakinasaif","funding_links":[],"total_stars":0,"followers":0,"following":2,"created_at":"2025-03-20T00:24:23.687Z","updated_at":"2025-03-20T00:24:23.687Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sakinasaif","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sakinasaif/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"sakinasaif/mynfpipeline","html_url":"https://github.com/sakinasaif/mynfpipeline","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T05:48:17.091Z","updated_at":"2025-09-05T05:48:17.091Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sakinasaif%2Fmynfpipeline/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086183,"issues_count":31279889,"pull_requests_count":96394260,"authors_count":10695968,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:27:57.704Z","updated_at":"2025-03-20T00:27:57.704Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":22338550741,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22338551453,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:27:59.169Z","updated_at":"2025-03-20T00:27:59.169Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":22338551454,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22338551455,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:27:59.234Z","updated_at":"2025-03-20T00:27:59.234Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/branch.yml","dependencies":[{"id":22338551522,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:27:59.743Z","updated_at":"2025-03-20T00:27:59.743Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/ci.yml","dependencies":[{"id":22338552669,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":22338552670,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22338552717,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:00.911Z","updated_at":"2025-03-20T00:28:00.911Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":22338552811,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:00.990Z","updated_at":"2025-03-20T00:28:00.990Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":22338552821,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22338552822,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":22338552823,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":22338552824,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:03.346Z","updated_at":"2025-03-20T00:28:03.346Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":22338553503,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":22338553504,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":22338554411,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:04.894Z","updated_at":"2025-03-20T00:28:04.894Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/linting.yml","dependencies":[{"id":22338554418,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":22338554419,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":22338554420,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22338554421,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:04.957Z","updated_at":"2025-03-20T00:28:04.957Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":22338554422,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":22338554990,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:07.089Z","updated_at":"2025-03-20T00:28:07.089Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/.github/workflows/release-announcements.yml","dependencies":[{"id":22338555308,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22338555350,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":22338555351,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.343Z","updated_at":"2025-03-20T00:28:12.343Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.405Z","updated_at":"2025-03-20T00:28:12.405Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.467Z","updated_at":"2025-03-20T00:28:12.467Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.527Z","updated_at":"2025-03-20T00:28:12.527Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.576Z","updated_at":"2025-03-20T00:28:12.576Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.623Z","updated_at":"2025-03-20T00:28:12.623Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-20T00:28:12.709Z","updated_at":"2025-03-20T00:28:12.709Z","repository_link":"https://github.com/sakinasaif/mynfpipeline/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:06.638Z","updated_at":"2025-10-07T08:14:03.780Z","avatar_url":"https://github.com/sakinasaif.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/33370","html_url":"https://science.ecosyste.ms/projects/33370","bibtex_url":"https://science.ecosyste.ms/projects/33370/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/33370/export.apalike"}