{"id":33408,"name":"dragenflow","description":null,"url":"https://github.com/dhslab/dragenflow","last_synced_at":"2025-09-05T05:51:33.460Z","repository":{"id":221766248,"uuid":"755327990","full_name":"dhslab/dragenflow","owner":"dhslab","description":null,"archived":false,"fork":false,"pushed_at":"2025-04-22T14:18:23.000Z","size":116136,"stargazers_count":0,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"dev","last_synced_at":"2025-04-22T15:32:07.470Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/dhslab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-02-09T22:32:27.000Z","updated_at":"2025-04-22T14:18:28.000Z","dependencies_parsed_at":"2024-04-29T22:36:24.649Z","dependency_job_id":"913e4fa3-b27a-4692-aefd-aa0c05827ea5","html_url":"https://github.com/dhslab/dragenflow","commit_stats":null,"previous_names":["dhslab/dragenmultiworkflow","dhslab/dragenflow"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/dhslab/dragenflow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dhslab","download_url":"https://codeload.github.com/dhslab/dragenflow/tar.gz/refs/heads/dev","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273718343,"owners_count":25155486,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"dhslab","name":"Code and Software from David Spencer's lab","uuid":"103161421","kind":"organization","description":"","email":"dspencerlab@gmail.com","website":"davidspencerlab.org","location":"United States of America","twitter":"dspencerlab","company":null,"icon_url":"https://avatars.githubusercontent.com/u/103161421?v=4","repositories_count":6,"last_synced_at":"2023-03-09T01:05:17.159Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/dhslab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-18T14:36:07.230Z","updated_at":"2023-03-09T01:05:17.179Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dhslab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/dhslab/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"dhslab/dragenflow","html_url":"https://github.com/dhslab/dragenflow","last_synced_at":"2025-08-31T18:58:35.641Z","status":null,"issues_count":0,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":164710.0,"issues_closed_count":0,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":164710.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2025-08-30T17:29:50.217Z","updated_at":"2025-09-01T16:07:51.732Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/dhslab%2Fdragenflow/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"NONE":2,"CONTRIBUTOR":1},"issue_authors":{},"pull_request_authors":{"dhspence":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10086183,"issues_count":31279889,"pull_requests_count":96394260,"authors_count":10695968,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"dhspence":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssueCommentEvent":1,"PushEvent":32,"PullRequestEvent":2,"CreateEvent":1},"last_year":{"IssueCommentEvent":1,"PushEvent":32,"PullRequestEvent":2,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.651Z","updated_at":"2024-02-09T23:43:46.651Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/awsfulltest.yml","dependencies":[{"id":16142644225,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16142644445,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.867Z","updated_at":"2024-02-09T23:43:46.867Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/awstest.yml","dependencies":[{"id":16142644446,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16142644447,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.881Z","updated_at":"2024-02-09T23:43:46.881Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/branch.yml","dependencies":[{"id":16142644448,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.888Z","updated_at":"2024-02-09T23:43:46.888Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/ci.yml","dependencies":[{"id":16142644449,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16142644450,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.895Z","updated_at":"2024-02-09T23:43:46.895Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/clean-up.yml","dependencies":[{"id":16142644451,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.901Z","updated_at":"2024-02-09T23:43:46.901Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/fix-linting.yml","dependencies":[{"id":16142644452,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16142644453,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.912Z","updated_at":"2024-02-09T23:43:46.912Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/linting.yml","dependencies":[{"id":16142644454,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16142644455,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16142644456,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":16142644457,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":16142644458,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":16142644459,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":16142644460,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.922Z","updated_at":"2024-02-09T23:43:46.922Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/linting_comment.yml","dependencies":[{"id":16142644461,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16142644462,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:46.927Z","updated_at":"2024-02-09T23:43:46.927Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/.github/workflows/release-announcments.yml","dependencies":[{"id":16142644486,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":16142644489,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":16142644491,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:47.033Z","updated_at":"2024-02-09T23:43:47.033Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:47.038Z","updated_at":"2024-02-09T23:43:47.038Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:47.050Z","updated_at":"2024-02-09T23:43:47.050Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-02-09T23:43:47.057Z","updated_at":"2024-02-09T23:43:47.057Z","repository_link":"https://github.com/dhslab/dragenflow/blob/dev/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:06.681Z","updated_at":"2025-10-07T08:14:04.742Z","avatar_url":"https://github.com/dhslab.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/33408","html_url":"https://science.ecosyste.ms/projects/33408"}