{"id":35405,"name":"genome-portal","description":"This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden ","url":"https://github.com/scilifelabdatacentre/genome-portal","last_synced_at":"2025-09-05T06:42:53.503Z","repository":{"id":226399747,"uuid":"768569366","full_name":"ScilifelabDataCentre/genome-portal","owner":"ScilifelabDataCentre","description":"This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden ","archived":false,"fork":false,"pushed_at":"2025-09-02T12:33:02.000Z","size":71776,"stargazers_count":0,"open_issues_count":2,"forks_count":0,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-02T13:31:15.084Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://genomes.scilifelab.se/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ScilifelabDataCentre.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.adoc","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2024-03-07T10:26:17.000Z","updated_at":"2025-07-07T09:33:23.000Z","dependencies_parsed_at":"2024-05-20T08:52:55.844Z","dependency_job_id":"bbd7f56d-f14e-40dc-9149-c63b20c38ce1","html_url":"https://github.com/ScilifelabDataCentre/genome-portal","commit_stats":null,"previous_names":["scilifelabdatacentre/swedgene","scilifelabdatacentre/genome-portal"],"tags_count":12,"template":false,"template_full_name":null,"purl":"pkg:github/ScilifelabDataCentre/genome-portal","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScilifelabDataCentre%2Fgenome-portal","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScilifelabDataCentre%2Fgenome-portal/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScilifelabDataCentre%2Fgenome-portal/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScilifelabDataCentre%2Fgenome-portal/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScilifelabDataCentre","download_url":"https://codeload.github.com/ScilifelabDataCentre/genome-portal/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScilifelabDataCentre%2Fgenome-portal/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273723207,"owners_count":25156303,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ScilifelabDataCentre","name":"SciLifeLab Data Centre","uuid":"46678105","kind":"organization","description":"The SciLifeLab Data Centre provides the SciLifeLab platforms with services for IT and data management.","email":null,"website":"https://www.scilifelab.se/data","location":"Stockholm and Uppsala, Sweden","twitter":"SciLifeLab_DC","company":null,"icon_url":"https://avatars.githubusercontent.com/u/46678105?v=4","repositories_count":27,"last_synced_at":"2025-07-01T22:47:02.796Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ScilifelabDataCentre","funding_links":[],"total_stars":null,"followers":35,"following":0,"created_at":"2022-11-09T20:57:04.477Z","updated_at":"2025-07-01T22:47:02.796Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScilifelabDataCentre","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScilifelabDataCentre/repositories"},"packages":[],"commits":{"id":8437128,"full_name":"scilifelabdatacentre/genome-portal","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-01-24T19:19:41.906Z","updated_at":"2025-01-24T19:19:41.906Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/scilifelabdatacentre%2Fgenome-portal/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"scilifelabdatacentre/genome-portal","html_url":"https://github.com/scilifelabdatacentre/genome-portal","last_synced_at":"2025-08-31T08:44:18.063Z","status":null,"issues_count":1,"pull_requests_count":110,"avg_time_to_close_issue":1729848.0,"avg_time_to_close_pull_request":539855.6224489796,"issues_closed_count":1,"pull_requests_closed_count":98,"pull_request_authors_count":5,"issue_authors_count":1,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":1.8363636363636364,"merged_pull_requests_count":97,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":71,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":691738.2881355932,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":59,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":2.267605633802817,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":1,"past_year_merged_pull_requests_count":59,"created_at":"2025-01-24T19:19:42.055Z","updated_at":"2025-09-03T04:54:39.221Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/scilifelabdatacentre%2Fgenome-portal","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/scilifelabdatacentre%2Fgenome-portal/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":2,"python":1},"issue_author_associations_count":{"MEMBER":1,"CONTRIBUTOR":1,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":69,"MEMBER":65,"CONTRIBUTOR":2},"issue_authors":{"RMCrean":1,"brinkdp":1,"apfuentes":1},"pull_request_authors":{"RMCrean":65,"kwentine":34,"brinkdp":32,"apfuentes":3,"dependabot[bot]":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10055219,"issues_count":30917502,"pull_requests_count":92945978,"authors_count":10627110,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":1,"python":1},"past_year_issue_author_associations_count":{"COLLABORATOR":1,"CONTRIBUTOR":1,"MEMBER":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":50,"MEMBER":47,"CONTRIBUTOR":1},"past_year_issue_authors":{"apfuentes":1,"brinkdp":1,"RMCrean":1},"past_year_pull_request_authors":{"RMCrean":47,"brinkdp":29,"kwentine":18,"apfuentes":3,"dependabot[bot]":1},"maintainers":[{"login":"RMCrean","count":66,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/RMCrean"},{"login":"kwentine","count":34,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kwentine"},{"login":"brinkdp","count":32,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/brinkdp"},{"login":"apfuentes","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/apfuentes"}],"active_maintainers":[{"login":"RMCrean","count":48,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/RMCrean"},{"login":"brinkdp","count":29,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/brinkdp"},{"login":"kwentine","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kwentine"},{"login":"apfuentes","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/apfuentes"}]},"events":{"total":{"CreateEvent":62,"CommitCommentEvent":2,"ReleaseEvent":6,"DeleteEvent":54,"MemberEvent":1,"IssueCommentEvent":122,"PushEvent":402,"PullRequestReviewCommentEvent":174,"PullRequestEvent":87,"PullRequestReviewEvent":213},"last_year":{"CreateEvent":62,"CommitCommentEvent":2,"ReleaseEvent":6,"DeleteEvent":54,"MemberEvent":1,"IssueCommentEvent":122,"PushEvent":402,"PullRequestReviewCommentEvent":174,"PullRequestEvent":87,"PullRequestReviewEvent":213}},"keywords":[],"dependencies":[{"ecosystem":"docker","filepath":"hugo/Dockerfile","sha":null,"kind":"manifest","created_at":"2024-03-25T11:49:18.146Z","updated_at":"2024-03-25T11:49:18.146Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/hugo/Dockerfile","dependencies":[{"id":17029266050,"package_name":"alpine","ecosystem":"docker","requirements":"3.19.1","direct":true,"kind":"build","optional":false},{"id":17029266053,"package_name":"nginxinc/nginx-unprivileged","ecosystem":"docker","requirements":"alpine","direct":true,"kind":"build","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/container_reg.yml","sha":null,"kind":"manifest","created_at":"2024-05-06T15:51:27.833Z","updated_at":"2024-05-06T15:51:27.833Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/.github/workflows/container_reg.yml","dependencies":[{"id":17946993859,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":17946993860,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":17946993909,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false},{"id":17946993910,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/lighthouse.yml","sha":null,"kind":"manifest","created_at":"2024-05-06T15:51:29.243Z","updated_at":"2024-05-06T15:51:29.243Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/.github/workflows/lighthouse.yml","dependencies":[{"id":17946994543,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":17946994544,"package_name":"peaceiris/actions-hugo","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":17946994545,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/precommit.yml","sha":null,"kind":"manifest","created_at":"2024-05-06T15:51:29.423Z","updated_at":"2024-05-06T15:51:29.423Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/.github/workflows/precommit.yml","dependencies":[{"id":17946994546,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":17946994547,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/trivy-scan.yml","sha":null,"kind":"manifest","created_at":"2024-05-06T15:51:29.566Z","updated_at":"2024-05-06T15:51:29.566Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/.github/workflows/trivy-scan.yml","dependencies":[{"id":17946994555,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":17946994556,"package_name":"aquasecurity/trivy-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":17946994557,"package_name":"github/codeql-action/upload-sarif","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-05-06T15:51:30.114Z","updated_at":"2024-05-06T15:51:30.114Z","repository_link":"https://github.com/ScilifelabDataCentre/genome-portal/blob/main/requirements.txt","dependencies":[{"id":17946994558,"package_name":"pre-commit","ecosystem":"pypi","requirements":"==3.7.0","direct":true,"kind":"runtime","optional":false},{"id":17946994559,"package_name":"requests","ecosystem":"pypi","requirements":"==2.31.0","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:08.880Z","updated_at":"2025-10-07T08:14:43.648Z","avatar_url":"https://github.com/ScilifelabDataCentre.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.14049736"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/35405","html_url":"https://science.ecosyste.ms/projects/35405","bibtex_url":"https://science.ecosyste.ms/projects/35405/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/35405/export.apalike"}