{"id":35805,"name":"pycytominer","description":"Python package for processing image-based profiling data","url":"https://github.com/cytomining/pycytominer","last_synced_at":"2025-09-05T06:53:21.191Z","repository":{"id":37774095,"uuid":"195106954","full_name":"cytomining/pycytominer","owner":"cytomining","description":"Python package for processing image-based profiling data","archived":false,"fork":false,"pushed_at":"2025-08-12T12:37:27.000Z","size":723125,"stargazers_count":124,"open_issues_count":102,"forks_count":40,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-01T10:42:20.285Z","etag":null,"topics":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"latest_commit_sha":null,"homepage":"https://pycytominer.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-07-03T18:22:51.000Z","updated_at":"2025-08-29T11:44:03.000Z","dependencies_parsed_at":"2025-06-16T13:48:15.068Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/pycytominer","commit_stats":{"total_commits":480,"total_committers":29,"mean_commits":"16.551724137931036","dds":0.4604166666666667,"last_synced_commit":"a5ae6c81a275b692ef5d4c85cfeb37696bf69242"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/pycytominer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/sbom","scorecard":{"id":314804,"data":{"date":"2025-08-11","repo":{"name":"github.com/cytomining/pycytominer","commit":"f916ec570642f099d21ece361dfe9525b2b26ece"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6.6,"checks":[{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"28 commit(s) and 11 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/integration-test.yml:1","Warn: no topLevel permission defined: .github/workflows/pypi-release.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.md:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.md:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":10,"reason":"security policy file detected","details":["Info: security policy file detected: github.com/cytomining/.github/SECURITY.md:1","Info: Found linked content: github.com/cytomining/.github/SECURITY.md:1","Info: Found disclosure, vulnerability, and/or timelines in security policy: github.com/cytomining/.github/SECURITY.md:1","Info: Found text in security policy: github.com/cytomining/.github/SECURITY.md:1"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/integration-test.yml:199"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":8,"reason":"2 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-33p9-3p43-82vq","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/docs-preview.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/docs-preview.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:61: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:73: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:95: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:97: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:125: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:168: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:186: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:193: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:210: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:217: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:228: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:230: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:259: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:267: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:278: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:289: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: containerImage not pinned by hash: build/docker/Dockerfile:1","Warn: containerImage not pinned by hash: build/docker/Dockerfile:25","Warn: containerImage not pinned by hash: build/docker/Dockerfile:35","Warn: pipCommand not pinned by hash: build/docker/Dockerfile:22","Info:   0 out of  10 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   3 containerImage dependencies pinned","Info:   0 out of   1 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-17T23:57:41.821Z","repository_id":37774095,"created_at":"2025-08-17T23:57:41.821Z","updated_at":"2025-08-17T23:57:41.821Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273287611,"owners_count":25078571,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-02T02:00:09.530Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":27,"last_synced_at":"2024-03-26T15:05:50.600Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","funding_links":[],"total_stars":252,"followers":21,"following":0,"created_at":"2022-11-03T23:13:01.208Z","updated_at":"2024-03-26T15:05:50.939Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"packages":[{"id":2868822,"name":"pycytominer","ecosystem":"pypi","description":"Python package for processing image-based profiling data","homepage":"https://pycytominer.readthedocs.io/","licenses":"BSD-3-Clause","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/cytomining/pycytominer","keywords_array":[],"namespace":null,"versions_count":10,"first_release_published_at":"2022-02-04T23:04:59.000Z","latest_release_published_at":"2025-08-06T21:50:42.000Z","latest_release_number":"1.2.4","last_synced_at":"2025-09-01T11:11:42.114Z","created_at":"2022-04-10T12:11:28.796Z","updated_at":"2025-09-01T11:11:42.114Z","registry_url":"https://pypi.org/project/pycytominer/","install_command":"pip install pycytominer --index-url https://pypi.org/simple","documentation_url":"https://pycytominer.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["License :: OSI Approved :: BSD License","Programming Language :: Python :: 3","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13","Programming Language :: Python :: 3.9"],"normalized_name":"pycytominer","project_status":null},"repo_metadata":{"uuid":"195106954","full_name":"cytomining/pycytominer","owner":"cytomining","description":"Python package for processing image-based profiling data","archived":false,"fork":false,"pushed_at":"2024-01-02T22:05:18.000Z","size":720969,"stargazers_count":60,"open_issues_count":89,"forks_count":32,"subscribers_count":6,"default_branch":"main","last_synced_at":"2024-01-06T23:47:03.179Z","etag":null,"topics":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"latest_commit_sha":null,"homepage":"https://pycytominer.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2019-07-03T18:22:51.000Z","updated_at":"2023-12-23T19:50:49.000Z","dependencies_parsed_at":"2023-12-04T20:53:54.124Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/pycytominer","commit_stats":{"total_commits":480,"total_committers":29,"mean_commits":"16.551724137931036","dds":0.4604166666666667,"last_synced_commit":"a5ae6c81a275b692ef5d4c85cfeb37696bf69242"},"previous_names":[],"tags_count":5,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":179552008,"owners_count":10831735,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":20,"last_synced_at":"2023-03-25T10:03:08.419Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","created_at":"2022-11-03T23:13:01.208Z","updated_at":"2023-03-25T10:03:08.608Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"tags":[{"name":"v1.0.1","sha":"95396f3411332d08bc4c858ee91a12eb4f26ce45","kind":"commit","published_at":"2023-11-08T16:18:42.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"015db959307cb3844282dd770acbaadc5c709a91","kind":"commit","published_at":"2023-11-01T01:52:39.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0/manifests"},{"name":"v0.2.0","sha":"f8ce3b4c5846dd5b0bec89e58c82956f3534c6c0","kind":"commit","published_at":"2022-06-17T22:16:12.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0/manifests"},{"name":"v0.1.5","sha":"9bb63c23d16d25fbadc283916622bad78bfa4c90","kind":"commit","published_at":"2022-06-17T22:06:05.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1.5","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5/manifests"},{"name":"v0.1","sha":"ea3340c19477c4be354f8f082b68bca7e8f18bdc","kind":"commit","published_at":"2022-02-08T20:17:03.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2024-01-07T00:24:41.438Z","dependent_packages_count":0,"downloads":1791,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":14.988421289566952,"dependent_repos_count":21.607168748712237,"dependent_packages_count":10.102944879846767,"stargazers_count":8.821375024321014,"forks_count":7.068153721707544,"docker_downloads_count":null,"average":12.517612732830903},"purl":"pkg:pypi/pycytominer","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pycytominer","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pycytominer","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pycytominer/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2024-01-05T23:48:36.980Z","issues_count":112,"pull_requests_count":85,"avg_time_to_close_issue":15519823.38,"avg_time_to_close_pull_request":3456409.1794871795,"issues_closed_count":49,"pull_requests_closed_count":78,"pull_request_authors_count":19,"issue_authors_count":18,"avg_comments_per_issue":2.267857142857143,"avg_comments_per_pull_request":3.411764705882353,"merged_pull_requests_count":70,"bot_issues_count":0,"bot_pull_requests_count":4,"past_year_issues_count":59,"past_year_pull_requests_count":55,"past_year_avg_time_to_close_issue":3087868.464285714,"past_year_avg_time_to_close_pull_request":918028.4375,"past_year_issues_closed_count":27,"past_year_pull_requests_closed_count":48,"past_year_pull_request_authors_count":14,"past_year_issue_authors_count":13,"past_year_avg_comments_per_issue":1.1864406779661016,"past_year_avg_comments_per_pull_request":3.2181818181818183,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":4,"past_year_merged_pull_requests_count":46,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/issues"},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pycytominer/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pycytominer/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pycytominer/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pycytominer/related_packages","maintainers":[{"uuid":"gwaygenomics","login":"gwaygenomics","name":null,"email":null,"url":null,"packages_count":4,"html_url":"https://pypi.org/user/gwaygenomics/","role":"Owner","created_at":"2025-05-10T11:14:25.869Z","updated_at":"2025-05-10T11:14:25.869Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/gwaygenomics/packages"},{"uuid":"d33bs","login":"d33bs","name":null,"email":null,"url":null,"packages_count":13,"html_url":"https://pypi.org/user/d33bs/","role":"Owner","created_at":"2025-05-10T11:14:25.793Z","updated_at":"2025-05-10T11:14:25.793Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/d33bs/packages"},{"uuid":"erikserrano","login":"erikserrano","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/erikserrano/","role":"Owner","created_at":"2025-05-10T11:14:25.830Z","updated_at":"2025-05-10T11:14:25.830Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/erikserrano/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":723584,"maintainers_count":307865,"namespaces_count":0,"keywords_count":237729,"github":"pypi","metadata":{"funded_packages_count":50427},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-02T05:22:54.883Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}},{"id":5300728,"name":"pycytominer","ecosystem":"conda","description":null,"homepage":"https://github.com/cytomining/pycytominer","licenses":"BSD-3-Clause","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/cytomining/pycytominer","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2022-02-10T13:08:44.000Z","latest_release_published_at":"2022-06-17T23:02:50.000Z","latest_release_number":"0.2.0","last_synced_at":"2025-09-01T11:11:48.023Z","created_at":"2022-10-03T16:09:26.172Z","updated_at":"2025-09-01T12:40:41.527Z","registry_url":"https://anaconda.org/conda-forge/pycytominer","install_command":"conda install -c conda-forge pycytominer","documentation_url":null,"metadata":{},"repo_metadata":{"id":37774095,"uuid":"195106954","full_name":"cytomining/pycytominer","owner":"cytomining","description":"Python package for processing image-based profiling data","archived":false,"fork":false,"pushed_at":"2025-08-12T12:37:27.000Z","size":723125,"stargazers_count":124,"open_issues_count":102,"forks_count":40,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-01T10:42:20.285Z","etag":null,"topics":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"latest_commit_sha":null,"homepage":"https://pycytominer.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-07-03T18:22:51.000Z","updated_at":"2025-08-29T11:44:03.000Z","dependencies_parsed_at":"2025-06-16T13:48:15.068Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/pycytominer","commit_stats":{"total_commits":480,"total_committers":29,"mean_commits":"16.551724137931036","dds":0.4604166666666667,"last_synced_commit":"a5ae6c81a275b692ef5d4c85cfeb37696bf69242"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/pycytominer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/sbom","scorecard":{"id":314804,"data":{"date":"2025-08-11","repo":{"name":"github.com/cytomining/pycytominer","commit":"f916ec570642f099d21ece361dfe9525b2b26ece"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6.6,"checks":[{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"28 commit(s) and 11 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/integration-test.yml:1","Warn: no topLevel permission defined: .github/workflows/pypi-release.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.md:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.md:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":10,"reason":"security policy file detected","details":["Info: security policy file detected: github.com/cytomining/.github/SECURITY.md:1","Info: Found linked content: github.com/cytomining/.github/SECURITY.md:1","Info: Found disclosure, vulnerability, and/or timelines in security policy: github.com/cytomining/.github/SECURITY.md:1","Info: Found text in security policy: github.com/cytomining/.github/SECURITY.md:1"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/integration-test.yml:199"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":8,"reason":"2 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-33p9-3p43-82vq","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/docs-preview.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/docs-preview.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:61: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:73: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:95: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:97: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:125: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:168: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:186: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:193: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:210: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:217: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:228: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:230: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:259: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:267: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:278: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:289: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: containerImage not pinned by hash: build/docker/Dockerfile:1","Warn: containerImage not pinned by hash: build/docker/Dockerfile:25","Warn: containerImage not pinned by hash: build/docker/Dockerfile:35","Warn: pipCommand not pinned by hash: build/docker/Dockerfile:22","Info:   0 out of  10 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   3 containerImage dependencies pinned","Info:   0 out of   1 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-17T23:57:41.821Z","repository_id":37774095,"created_at":"2025-08-17T23:57:41.821Z","updated_at":"2025-08-17T23:57:41.821Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273125080,"owners_count":25050184,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-01T02:00:09.058Z","response_time":120,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":27,"last_synced_at":"2024-03-26T15:05:50.600Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","funding_links":[],"total_stars":252,"followers":21,"following":0,"created_at":"2022-11-03T23:13:01.208Z","updated_at":"2024-03-26T15:05:50.939Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"tags":[{"name":"v1.2.4","sha":"de26155658f1218e3ee1746a9a44600afefde20e","kind":"commit","published_at":"2025-08-06T21:49:21.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.4","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4/manifests"},{"name":"v1.2.3","sha":"8f544069dac9aa85d4b2057e7eafaff6bf1ff79e","kind":"commit","published_at":"2025-05-08T15:32:06.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.3","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3/manifests"},{"name":"v1.2.2","sha":"35d54c66f867946d4bcc60cc964634178408bfb7","kind":"commit","published_at":"2025-01-23T17:12:35.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.2","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2/manifests"},{"name":"v1.2.1","sha":"08f3a043fd22e8f86de5488fdfc2d21814a491fb","kind":"commit","published_at":"2024-11-20T19:58:30.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1/manifests"},{"name":"v1.2.0","sha":"98da73fd8b7d205ada591cf0f88ebb2bbf314719","kind":"commit","published_at":"2024-09-30T22:23:04.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0/manifests"},{"name":"v1.1.0","sha":"2cd5ad5cadbd500dc44111d4f3cb1b69e5d74b57","kind":"commit","published_at":"2024-03-13T14:42:59.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.1.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0/manifests"},{"name":"v1.0.1","sha":"95396f3411332d08bc4c858ee91a12eb4f26ce45","kind":"commit","published_at":"2023-11-08T16:18:42.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"015db959307cb3844282dd770acbaadc5c709a91","kind":"commit","published_at":"2023-11-01T01:52:39.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0/manifests"},{"name":"v0.2.0","sha":"f8ce3b4c5846dd5b0bec89e58c82956f3534c6c0","kind":"commit","published_at":"2022-06-17T22:16:12.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0/manifests"},{"name":"v0.1.5","sha":"9bb63c23d16d25fbadc283916622bad78bfa4c90","kind":"commit","published_at":"2022-06-17T22:06:05.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1.5","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5/manifests"},{"name":"v0.1","sha":"ea3340c19477c4be354f8f082b68bca7e8f18bdc","kind":"commit","published_at":"2022-02-08T20:17:03.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2025-09-01T12:40:41.527Z","dependent_packages_count":1,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":34.025455452957324,"dependent_packages_count":28.819565759920142,"stargazers_count":40.73371599700524,"forks_count":33.94559520838533,"average":34.38108310456701},"purl":"pkg:conda/pycytominer","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/conda/pycytominer","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/conda/pycytominer","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/conda/pycytominer/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T10:51:20.538Z","issues_count":137,"pull_requests_count":210,"avg_time_to_close_issue":16447789.788732395,"avg_time_to_close_pull_request":2008210.7891891892,"issues_closed_count":70,"pull_requests_closed_count":185,"pull_request_authors_count":19,"issue_authors_count":21,"avg_comments_per_issue":2.18978102189781,"avg_comments_per_pull_request":2.480952380952381,"merged_pull_requests_count":174,"bot_issues_count":0,"bot_pull_requests_count":62,"past_year_issues_count":23,"past_year_pull_requests_count":120,"past_year_avg_time_to_close_issue":6712905.25,"past_year_avg_time_to_close_pull_request":764266.3173076923,"past_year_issues_closed_count":16,"past_year_pull_requests_closed_count":104,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":1.9565217391304348,"past_year_avg_comments_per_pull_request":1.7333333333333334,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":57,"past_year_merged_pull_requests_count":101,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/issues","maintainers":[{"login":"d33bs","count":107,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"kenibrewer","count":53,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"gwaybio","count":45,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"axiomcura","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"jenna-tomkinson","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"shntnu","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shntnu"},{"login":"vincerubinetti","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/vincerubinetti"},{"login":"bethac07","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}],"active_maintainers":[{"login":"d33bs","count":71,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"axiomcura","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"gwaybio","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"jenna-tomkinson","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"kenibrewer","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer/related_packages","maintainers":[],"registry":{"name":"conda-forge.org","url":"https://conda-forge.org","ecosystem":"conda","default":false,"packages_count":20636,"maintainers_count":0,"namespaces_count":0,"keywords_count":13372,"github":"conda-forge","metadata":{"kind":"conda-forge","key":"CondaForge","api":"https://conda.anaconda.org","funded_packages_count":2180},"icon_url":"https://github.com/conda-forge.png","created_at":"2022-10-03T15:37:08.743Z","updated_at":"2025-09-02T07:18:48.647Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/namespaces"}},{"id":5290227,"name":"pycytominer.collate","ecosystem":"conda","description":null,"homepage":"https://github.com/cytomining/pycytominer","licenses":"BSD-3-Clause","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/cytomining/pycytominer","keywords_array":[],"namespace":null,"versions_count":1,"first_release_published_at":"2022-06-24T15:01:12.000Z","latest_release_published_at":"2022-06-24T15:01:12.000Z","latest_release_number":"0.2.0","last_synced_at":"2025-09-01T11:11:47.570Z","created_at":"2022-10-03T15:49:30.588Z","updated_at":"2025-09-01T12:40:41.530Z","registry_url":"https://anaconda.org/conda-forge/pycytominer.collate","install_command":"conda install -c conda-forge pycytominer.collate","documentation_url":null,"metadata":{},"repo_metadata":{"id":37774095,"uuid":"195106954","full_name":"cytomining/pycytominer","owner":"cytomining","description":"Python package for processing image-based profiling data","archived":false,"fork":false,"pushed_at":"2025-08-12T12:37:27.000Z","size":723125,"stargazers_count":124,"open_issues_count":102,"forks_count":40,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-01T10:42:20.285Z","etag":null,"topics":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"latest_commit_sha":null,"homepage":"https://pycytominer.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-07-03T18:22:51.000Z","updated_at":"2025-08-29T11:44:03.000Z","dependencies_parsed_at":"2025-06-16T13:48:15.068Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/pycytominer","commit_stats":{"total_commits":480,"total_committers":29,"mean_commits":"16.551724137931036","dds":0.4604166666666667,"last_synced_commit":"a5ae6c81a275b692ef5d4c85cfeb37696bf69242"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/pycytominer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/sbom","scorecard":{"id":314804,"data":{"date":"2025-08-11","repo":{"name":"github.com/cytomining/pycytominer","commit":"f916ec570642f099d21ece361dfe9525b2b26ece"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6.6,"checks":[{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"28 commit(s) and 11 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/integration-test.yml:1","Warn: no topLevel permission defined: .github/workflows/pypi-release.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.md:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.md:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":10,"reason":"security policy file detected","details":["Info: security policy file detected: github.com/cytomining/.github/SECURITY.md:1","Info: Found linked content: github.com/cytomining/.github/SECURITY.md:1","Info: Found disclosure, vulnerability, and/or timelines in security policy: github.com/cytomining/.github/SECURITY.md:1","Info: Found text in security policy: github.com/cytomining/.github/SECURITY.md:1"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/integration-test.yml:199"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":8,"reason":"2 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-33p9-3p43-82vq","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/docs-preview.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/docs-preview.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:61: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:73: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:95: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:97: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:125: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:168: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:186: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:193: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:210: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:217: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:228: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:230: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:259: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:267: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:278: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:289: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: containerImage not pinned by hash: build/docker/Dockerfile:1","Warn: containerImage not pinned by hash: build/docker/Dockerfile:25","Warn: containerImage not pinned by hash: build/docker/Dockerfile:35","Warn: pipCommand not pinned by hash: build/docker/Dockerfile:22","Info:   0 out of  10 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   3 containerImage dependencies pinned","Info:   0 out of   1 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-17T23:57:41.821Z","repository_id":37774095,"created_at":"2025-08-17T23:57:41.821Z","updated_at":"2025-08-17T23:57:41.821Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273125080,"owners_count":25050184,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-01T02:00:09.058Z","response_time":120,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":27,"last_synced_at":"2024-03-26T15:05:50.600Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","funding_links":[],"total_stars":252,"followers":21,"following":0,"created_at":"2022-11-03T23:13:01.208Z","updated_at":"2024-03-26T15:05:50.939Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"tags":[{"name":"v1.2.4","sha":"de26155658f1218e3ee1746a9a44600afefde20e","kind":"commit","published_at":"2025-08-06T21:49:21.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.4","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4/manifests"},{"name":"v1.2.3","sha":"8f544069dac9aa85d4b2057e7eafaff6bf1ff79e","kind":"commit","published_at":"2025-05-08T15:32:06.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.3","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3/manifests"},{"name":"v1.2.2","sha":"35d54c66f867946d4bcc60cc964634178408bfb7","kind":"commit","published_at":"2025-01-23T17:12:35.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.2","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2/manifests"},{"name":"v1.2.1","sha":"08f3a043fd22e8f86de5488fdfc2d21814a491fb","kind":"commit","published_at":"2024-11-20T19:58:30.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1/manifests"},{"name":"v1.2.0","sha":"98da73fd8b7d205ada591cf0f88ebb2bbf314719","kind":"commit","published_at":"2024-09-30T22:23:04.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0/manifests"},{"name":"v1.1.0","sha":"2cd5ad5cadbd500dc44111d4f3cb1b69e5d74b57","kind":"commit","published_at":"2024-03-13T14:42:59.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.1.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0/manifests"},{"name":"v1.0.1","sha":"95396f3411332d08bc4c858ee91a12eb4f26ce45","kind":"commit","published_at":"2023-11-08T16:18:42.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"015db959307cb3844282dd770acbaadc5c709a91","kind":"commit","published_at":"2023-11-01T01:52:39.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0/manifests"},{"name":"v0.2.0","sha":"f8ce3b4c5846dd5b0bec89e58c82956f3534c6c0","kind":"commit","published_at":"2022-06-17T22:16:12.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0/manifests"},{"name":"v0.1.5","sha":"9bb63c23d16d25fbadc283916622bad78bfa4c90","kind":"commit","published_at":"2022-06-17T22:06:05.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1.5","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5/manifests"},{"name":"v0.1","sha":"ea3340c19477c4be354f8f082b68bca7e8f18bdc","kind":"commit","published_at":"2022-02-08T20:17:03.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2025-09-01T12:40:41.529Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":34.025455452957324,"dependent_packages_count":51.17544297479411,"stargazers_count":40.73371599700524,"forks_count":33.94559520838533,"average":39.9700524082855},"purl":"pkg:conda/pycytominer.collate","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/conda/pycytominer.collate","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/conda/pycytominer.collate","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/conda/pycytominer.collate/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T10:51:20.538Z","issues_count":137,"pull_requests_count":210,"avg_time_to_close_issue":16447789.788732395,"avg_time_to_close_pull_request":2008210.7891891892,"issues_closed_count":70,"pull_requests_closed_count":185,"pull_request_authors_count":19,"issue_authors_count":21,"avg_comments_per_issue":2.18978102189781,"avg_comments_per_pull_request":2.480952380952381,"merged_pull_requests_count":174,"bot_issues_count":0,"bot_pull_requests_count":62,"past_year_issues_count":23,"past_year_pull_requests_count":120,"past_year_avg_time_to_close_issue":6712905.25,"past_year_avg_time_to_close_pull_request":764266.3173076923,"past_year_issues_closed_count":16,"past_year_pull_requests_closed_count":104,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":1.9565217391304348,"past_year_avg_comments_per_pull_request":1.7333333333333334,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":57,"past_year_merged_pull_requests_count":101,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/issues","maintainers":[{"login":"d33bs","count":107,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"kenibrewer","count":53,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"gwaybio","count":45,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"axiomcura","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"jenna-tomkinson","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"shntnu","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shntnu"},{"login":"vincerubinetti","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/vincerubinetti"},{"login":"bethac07","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}],"active_maintainers":[{"login":"d33bs","count":71,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"axiomcura","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"gwaybio","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"jenna-tomkinson","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"kenibrewer","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer.collate/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer.collate/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer.collate/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages/pycytominer.collate/related_packages","maintainers":[],"registry":{"name":"conda-forge.org","url":"https://conda-forge.org","ecosystem":"conda","default":false,"packages_count":20636,"maintainers_count":0,"namespaces_count":0,"keywords_count":13372,"github":"conda-forge","metadata":{"kind":"conda-forge","key":"CondaForge","api":"https://conda.anaconda.org","funded_packages_count":2180},"icon_url":"https://github.com/conda-forge.png","created_at":"2022-10-03T15:37:08.743Z","updated_at":"2025-09-02T07:18:48.647Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/conda-forge.org/namespaces"}},{"id":8799849,"name":"github.com/cytomining/pycytominer","ecosystem":"go","description":null,"homepage":null,"licenses":"bsd-3-clause","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/cytomining/pycytominer","keywords_array":[],"namespace":null,"versions_count":10,"first_release_published_at":"2022-06-17T22:06:05.000Z","latest_release_published_at":"2025-08-06T21:49:21.000Z","latest_release_number":"v1.2.4","last_synced_at":"2025-09-01T11:11:43.627Z","created_at":"2024-01-24T05:41:46.692Z","updated_at":"2025-09-01T12:40:41.527Z","registry_url":"https://pkg.go.dev/github.com/cytomining/pycytominer","install_command":"go get github.com/cytomining/pycytominer","documentation_url":"https://pkg.go.dev/github.com/cytomining/pycytominer#section-documentation","metadata":{},"repo_metadata":{"id":37774095,"uuid":"195106954","full_name":"cytomining/pycytominer","owner":"cytomining","description":"Python package for processing image-based profiling data","archived":false,"fork":false,"pushed_at":"2025-08-12T12:37:27.000Z","size":723125,"stargazers_count":124,"open_issues_count":102,"forks_count":40,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-09-01T10:42:20.285Z","etag":null,"topics":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"latest_commit_sha":null,"homepage":"https://pycytominer.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-07-03T18:22:51.000Z","updated_at":"2025-08-29T11:44:03.000Z","dependencies_parsed_at":"2025-06-16T13:48:15.068Z","dependency_job_id":null,"html_url":"https://github.com/cytomining/pycytominer","commit_stats":{"total_commits":480,"total_committers":29,"mean_commits":"16.551724137931036","dds":0.4604166666666667,"last_synced_commit":"a5ae6c81a275b692ef5d4c85cfeb37696bf69242"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/pycytominer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/sbom","scorecard":{"id":314804,"data":{"date":"2025-08-11","repo":{"name":"github.com/cytomining/pycytominer","commit":"f916ec570642f099d21ece361dfe9525b2b26ece"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6.6,"checks":[{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"28 commit(s) and 11 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/integration-test.yml:1","Warn: no topLevel permission defined: .github/workflows/pypi-release.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.md:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.md:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":10,"reason":"security policy file detected","details":["Info: security policy file detected: github.com/cytomining/.github/SECURITY.md:1","Info: Found linked content: github.com/cytomining/.github/SECURITY.md:1","Info: Found disclosure, vulnerability, and/or timelines in security policy: github.com/cytomining/.github/SECURITY.md:1","Info: Found text in security policy: github.com/cytomining/.github/SECURITY.md:1"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/integration-test.yml:199"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":8,"reason":"2 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-33p9-3p43-82vq","Warn: Project is vulnerable to: GHSA-pq67-6m6q-mj2v"],"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/docs-preview.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/docs-preview.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:61: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:73: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:95: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:97: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:125: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:168: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:186: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:193: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:210: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/integration-test.yml:217: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:228: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:230: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:259: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:267: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:278: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/integration-test.yml:289: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/integration-test.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:23: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/pypi-release.yml:42: update your workflow using https://app.stepsecurity.io/secureworkflow/cytomining/pycytominer/pypi-release.yml/main?enable=pin","Warn: containerImage not pinned by hash: build/docker/Dockerfile:1","Warn: containerImage not pinned by hash: build/docker/Dockerfile:25","Warn: containerImage not pinned by hash: build/docker/Dockerfile:35","Warn: pipCommand not pinned by hash: build/docker/Dockerfile:22","Info:   0 out of  10 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   3 containerImage dependencies pinned","Info:   0 out of   1 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}}]},"last_synced_at":"2025-08-17T23:57:41.821Z","repository_id":37774095,"created_at":"2025-08-17T23:57:41.821Z","updated_at":"2025-08-17T23:57:41.821Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273125080,"owners_count":25050184,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-01T02:00:09.058Z","response_time":120,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":27,"last_synced_at":"2024-03-26T15:05:50.600Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","funding_links":[],"total_stars":252,"followers":21,"following":0,"created_at":"2022-11-03T23:13:01.208Z","updated_at":"2024-03-26T15:05:50.939Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"tags":[{"name":"v1.2.4","sha":"de26155658f1218e3ee1746a9a44600afefde20e","kind":"commit","published_at":"2025-08-06T21:49:21.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.4","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.4/manifests"},{"name":"v1.2.3","sha":"8f544069dac9aa85d4b2057e7eafaff6bf1ff79e","kind":"commit","published_at":"2025-05-08T15:32:06.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.3","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.3/manifests"},{"name":"v1.2.2","sha":"35d54c66f867946d4bcc60cc964634178408bfb7","kind":"commit","published_at":"2025-01-23T17:12:35.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.2","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.2/manifests"},{"name":"v1.2.1","sha":"08f3a043fd22e8f86de5488fdfc2d21814a491fb","kind":"commit","published_at":"2024-11-20T19:58:30.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.1/manifests"},{"name":"v1.2.0","sha":"98da73fd8b7d205ada591cf0f88ebb2bbf314719","kind":"commit","published_at":"2024-09-30T22:23:04.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.2.0/manifests"},{"name":"v1.1.0","sha":"2cd5ad5cadbd500dc44111d4f3cb1b69e5d74b57","kind":"commit","published_at":"2024-03-13T14:42:59.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.1.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.1.0/manifests"},{"name":"v1.0.1","sha":"95396f3411332d08bc4c858ee91a12eb4f26ce45","kind":"commit","published_at":"2023-11-08T16:18:42.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"015db959307cb3844282dd770acbaadc5c709a91","kind":"commit","published_at":"2023-11-01T01:52:39.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v1.0.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v1.0.0/manifests"},{"name":"v0.2.0","sha":"f8ce3b4c5846dd5b0bec89e58c82956f3534c6c0","kind":"commit","published_at":"2022-06-17T22:16:12.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.2.0","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.2.0/manifests"},{"name":"v0.1.5","sha":"9bb63c23d16d25fbadc283916622bad78bfa4c90","kind":"commit","published_at":"2022-06-17T22:06:05.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1.5","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1.5/manifests"},{"name":"v0.1","sha":"ea3340c19477c4be354f8f082b68bca7e8f18bdc","kind":"commit","published_at":"2022-02-08T20:17:03.000Z","download_url":"https://codeload.github.com/cytomining/pycytominer/tar.gz/v0.1","html_url":"https://github.com/cytomining/pycytominer/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cytomining/pycytominer@v0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2025-09-01T12:40:41.526Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":10.203841068845398,"dependent_packages_count":9.049219470518674,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":9.626530269682036},"purl":"pkg:golang/github.com/cytomining/pycytominer","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/cytomining/pycytominer","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/cytomining/pycytominer","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/cytomining/pycytominer/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T10:51:20.538Z","issues_count":137,"pull_requests_count":210,"avg_time_to_close_issue":16447789.788732395,"avg_time_to_close_pull_request":2008210.7891891892,"issues_closed_count":70,"pull_requests_closed_count":185,"pull_request_authors_count":19,"issue_authors_count":21,"avg_comments_per_issue":2.18978102189781,"avg_comments_per_pull_request":2.480952380952381,"merged_pull_requests_count":174,"bot_issues_count":0,"bot_pull_requests_count":62,"past_year_issues_count":23,"past_year_pull_requests_count":120,"past_year_avg_time_to_close_issue":6712905.25,"past_year_avg_time_to_close_pull_request":764266.3173076923,"past_year_issues_closed_count":16,"past_year_pull_requests_closed_count":104,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":1.9565217391304348,"past_year_avg_comments_per_pull_request":1.7333333333333334,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":57,"past_year_merged_pull_requests_count":101,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/issues","maintainers":[{"login":"d33bs","count":107,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"kenibrewer","count":53,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"gwaybio","count":45,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"axiomcura","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"jenna-tomkinson","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"shntnu","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shntnu"},{"login":"vincerubinetti","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/vincerubinetti"},{"login":"bethac07","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}],"active_maintainers":[{"login":"d33bs","count":71,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"axiomcura","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"gwaybio","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"jenna-tomkinson","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"kenibrewer","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fcytomining%2Fpycytominer/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fcytomining%2Fpycytominer/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fcytomining%2Fpycytominer/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fcytomining%2Fpycytominer/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1949730,"maintainers_count":0,"namespaces_count":740859,"keywords_count":109064,"github":"golang","metadata":{"funded_packages_count":48803},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-02T07:05:12.865Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}}],"commits":{"id":28715,"full_name":"cytomining/pycytominer","default_branch":"master","committers":[{"name":"gwaygenomics","email":"gregory.way@gmail.com","login":"gwaybio","count":270},{"name":"Niranj","email":"srinivasniranj@gmail.com","login":"niranjchandrasekaran","count":86},{"name":"Dave Bunten","email":"dave.bunten@cuanschutz.edu","login":"d33bs","count":63},{"name":"Ken Brewer","email":"kenibrewer","login":"kenibrewer","count":56},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":50},{"name":"Beth Cimini","email":"bethac07","login":"bethac07","count":35},{"name":"roshankern","email":"roshan.kern@ucdenver.edu","login":"roshankern","count":23},{"name":"michaelbornholdt","email":"michael.bornholdt@outlook.com","login":"michaelbornholdt","count":22},{"name":"Stephen Fleming","email":"sjf11@case.edu","login":"sjfleming","count":12},{"name":"Ruifan Pei","email":"ruifan.pei@gmail.com","login":"ruifanp","count":11},{"name":"Shantanu Singh","email":"shsingh@broadinstitute.org","login":"shntnu","count":9},{"name":"Erik Serrano","email":"31600622+axiomcura","login":"axiomcura","count":8},{"name":"John Arevalo","email":"johnarevalo@gmail.com","login":"johnarevalo","count":5},{"name":"Hillary Tsang","email":"hillaryy.tsang@gmail.com","login":"hillsbury","count":4},{"name":"Vince Rubinetti","email":"vince.rubinetti@gmail.com","login":"vincerubinetti","count":3},{"name":"Jenna Tomkinson","email":"107513215+jenna-tomkinson","login":"jenna-tomkinson","count":2},{"name":"Charlotte Bunne","email":"bunnech","login":"bunnech","count":2},{"name":"alxndrkalinin","email":"1107762+alxndrkalinin","login":"alxndrkalinin","count":1},{"name":"Rebecca Senft","email":"senftrebecca@gmail.com","login":"rsenft1","count":1},{"name":"Erin Weisbart","email":"54687786+ErinWeisbart","login":"ErinWeisbart","count":1},{"name":"Steve Taylor","email":"staylorx@gmail.com","login":"staylorx","count":1},{"name":"AdeboyeML","email":"oluomo_lade@yahoo.com","login":"AdeboyeML","count":1}],"total_commits":666,"total_committers":22,"total_bot_commits":50,"total_bot_committers":1,"mean_commits":30.272727272727273,"dds":0.5945945945945945,"past_year_committers":[{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":42},{"name":"Dave Bunten","email":"dave.bunten@cuanschutz.edu","login":"d33bs","count":38},{"name":"Erik Serrano","email":"31600622+axiomcura","login":"axiomcura","count":4},{"name":"Gregory Way","email":"gregory.way@gmail.com","login":"gwaybio","count":3},{"name":"Shantanu Singh","email":"shsingh@broadinstitute.org","login":"shntnu","count":1},{"name":"Ken Brewer","email":"kenibrewer","login":"kenibrewer","count":1}],"past_year_total_commits":89,"past_year_total_committers":6,"past_year_total_bot_commits":42,"past_year_total_bot_committers":1,"past_year_mean_commits":14.833333333333334,"past_year_dds":0.5280898876404494,"last_synced_at":"2025-05-27T06:44:21.134Z","last_synced_commit":"b5d4219ef6d5a8441917ed55a1c220eed13acd22","created_at":"2023-03-07T16:38:39.675Z","updated_at":"2025-05-27T06:46:57.857Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.276Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cytomining/pycytominer","html_url":"https://github.com/cytomining/pycytominer","last_synced_at":"2025-09-05T03:34:05.909Z","status":null,"issues_count":156,"pull_requests_count":288,"avg_time_to_close_issue":16324461.797297297,"avg_time_to_close_pull_request":1743214.184,"issues_closed_count":74,"pull_requests_closed_count":250,"pull_request_authors_count":19,"issue_authors_count":22,"avg_comments_per_issue":1.75,"avg_comments_per_pull_request":2.298611111111111,"merged_pull_requests_count":235,"bot_issues_count":0,"bot_pull_requests_count":94,"past_year_issues_count":30,"past_year_pull_requests_count":161,"past_year_avg_time_to_close_issue":2771492.4375,"past_year_avg_time_to_close_pull_request":639008.7517730496,"past_year_issues_closed_count":16,"past_year_pull_requests_closed_count":141,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":0.4666666666666667,"past_year_avg_comments_per_pull_request":1.8571428571428572,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":75,"past_year_merged_pull_requests_count":135,"created_at":"2023-05-10T21:02:18.780Z","updated_at":"2025-09-05T03:34:05.910Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fpycytominer/issues","issue_labels_count":{"enhancement":60,"bug":27,"documentation":10,"question":6,"good first issue":6,"dependencies":5,"high priority":4,"announcements":2,"Pending manuscript discussion":2,"refactor":1},"pull_request_labels_count":{"dependencies":93,"python":69,"github_actions":3,"enhancement":2,"high priority":1},"issue_author_associations_count":{"MEMBER":75,"CONTRIBUTOR":40,"COLLABORATOR":30,"NONE":11},"pull_request_author_associations_count":{"MEMBER":131,"CONTRIBUTOR":123,"COLLABORATOR":31,"NONE":3},"issue_authors":{"d33bs":39,"kenibrewer":32,"gwaybio":28,"shntnu":11,"jenna-tomkinson":11,"bethac07":9,"axiomcura":6,"ErinWeisbart":4,"ethancohen123":2,"MikeLippincott":2,"kvshams":1,"arka2696":1,"niranjchandrasekaran":1,"vincerubinetti":1,"alxndrkalinin":1,"carmendv":1,"hwarden162":1,"yhan8":1,"mccruz07":1,"PaulaLlanos":1,"fefossa":1,"michaelbornholdt":1},"pull_request_authors":{"d33bs":97,"dependabot[bot]":94,"kenibrewer":34,"gwaybio":17,"shntnu":11,"axiomcura":9,"bethac07":6,"johnarevalo":3,"vincerubinetti":2,"bunnech":2,"fefossa":2,"staylorx":2,"roshankern":2,"jenna-tomkinson":2,"alxndrkalinin":1,"michaelbornholdt":1,"ctr26":1,"niranjchandrasekaran":1,"ErinWeisbart":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10087320,"issues_count":31306968,"pull_requests_count":96469683,"authors_count":10696025,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":14,"bug":6,"dependencies":5,"documentation":4,"question":1},"past_year_pull_request_labels_count":{"dependencies":75,"python":69,"github_actions":3},"past_year_issue_author_associations_count":{"MEMBER":26,"COLLABORATOR":2,"NONE":2},"past_year_pull_request_author_associations_count":{"MEMBER":83,"CONTRIBUTOR":75,"COLLABORATOR":3},"past_year_issue_authors":{"d33bs":22,"jenna-tomkinson":3,"axiomcura":2,"arka2696":1,"hwarden162":1,"MikeLippincott":1},"past_year_pull_request_authors":{"d33bs":75,"dependabot[bot]":75,"axiomcura":5,"gwaybio":4,"kenibrewer":2},"maintainers":[{"login":"d33bs","count":136,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"kenibrewer","count":49,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"gwaybio","count":45,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"axiomcura","count":15,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"jenna-tomkinson","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"shntnu","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/shntnu"},{"login":"vincerubinetti","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/vincerubinetti"},{"login":"bethac07","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}],"active_maintainers":[{"login":"d33bs","count":97,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"axiomcura","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/axiomcura"},{"login":"gwaybio","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gwaybio"},{"login":"jenna-tomkinson","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"kenibrewer","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kenibrewer"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}]},"events":{"total":{"CreateEvent":47,"ReleaseEvent":3,"IssuesEvent":32,"WatchEvent":44,"DeleteEvent":49,"IssueCommentEvent":185,"PushEvent":132,"PullRequestReviewCommentEvent":45,"PullRequestEvent":153,"PullRequestReviewEvent":101,"ForkEvent":5},"last_year":{"CreateEvent":47,"ReleaseEvent":3,"IssuesEvent":32,"WatchEvent":44,"DeleteEvent":49,"IssueCommentEvent":185,"PushEvent":132,"PullRequestReviewCommentEvent":45,"PullRequestEvent":153,"PullRequestReviewEvent":101,"ForkEvent":5}},"keywords":["carpenter-lab","cellprofiler","cytominer","image-processing","microscopy","morphological-profiling","python","way-lab"],"dependencies":[{"ecosystem":"pypi","filepath":"poetry.lock","sha":null,"kind":"lockfile","created_at":"2023-10-03T08:00:30.074Z","updated_at":"2023-10-03T08:00:30.074Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/poetry.lock","dependencies":[{"id":14075758693,"package_name":"agate","ecosystem":"pypi","requirements":"1.7.1","direct":false,"kind":null,"optional":false},{"id":14075758695,"package_name":"agate-dbf","ecosystem":"pypi","requirements":"0.2.2","direct":false,"kind":null,"optional":false},{"id":14075758696,"package_name":"agate-excel","ecosystem":"pypi","requirements":"0.2.5","direct":false,"kind":null,"optional":false},{"id":14075758697,"package_name":"agate-sql","ecosystem":"pypi","requirements":"0.5.9","direct":false,"kind":null,"optional":false},{"id":14075758708,"package_name":"aiobotocore","ecosystem":"pypi","requirements":"2.5.4","direct":false,"kind":null,"optional":false},{"id":14075758709,"package_name":"aiohttp","ecosystem":"pypi","requirements":"3.8.5","direct":false,"kind":null,"optional":false},{"id":14075758710,"package_name":"aioitertools","ecosystem":"pypi","requirements":"0.11.0","direct":false,"kind":null,"optional":false},{"id":14075758711,"package_name":"aiosignal","ecosystem":"pypi","requirements":"1.3.1","direct":false,"kind":null,"optional":false},{"id":14075758712,"package_name":"alabaster","ecosystem":"pypi","requirements":"0.7.13","direct":false,"kind":null,"optional":false},{"id":14075758713,"package_name":"async-timeout","ecosystem":"pypi","requirements":"4.0.2","direct":false,"kind":null,"optional":false},{"id":14075758714,"package_name":"attrs","ecosystem":"pypi","requirements":"23.1.0","direct":false,"kind":null,"optional":false},{"id":14075758715,"package_name":"babel","ecosystem":"pypi","requirements":"2.12.1","direct":false,"kind":null,"optional":false},{"id":14075758716,"package_name":"backports-tempfile","ecosystem":"pypi","requirements":"1.0","direct":false,"kind":null,"optional":false},{"id":14075758740,"package_name":"backports-weakref","ecosystem":"pypi","requirements":"1.0.post1","direct":false,"kind":null,"optional":false},{"id":14075758741,"package_name":"boto3","ecosystem":"pypi","requirements":"1.28.17","direct":false,"kind":null,"optional":false},{"id":14075758742,"package_name":"botocore","ecosystem":"pypi","requirements":"1.31.17","direct":false,"kind":null,"optional":false},{"id":14075758743,"package_name":"certifi","ecosystem":"pypi","requirements":"2023.7.22","direct":false,"kind":null,"optional":false},{"id":14075758744,"package_name":"cfgv","ecosystem":"pypi","requirements":"3.3.1","direct":false,"kind":null,"optional":false},{"id":14075758745,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"3.2.0","direct":false,"kind":null,"optional":false},{"id":14075758746,"package_name":"click","ecosystem":"pypi","requirements":"8.1.6","direct":false,"kind":null,"optional":false},{"id":14075758747,"package_name":"codecov","ecosystem":"pypi","requirements":"2.1.13","direct":false,"kind":null,"optional":false},{"id":14075758748,"package_name":"colorama","ecosystem":"pypi","requirements":"0.4.6","direct":false,"kind":null,"optional":false},{"id":14075758749,"package_name":"configparser","ecosystem":"pypi","requirements":"6.0.0","direct":false,"kind":null,"optional":false},{"id":14075758750,"package_name":"coverage","ecosystem":"pypi","requirements":"7.2.7","direct":false,"kind":null,"optional":false},{"id":14075758751,"package_name":"csvkit","ecosystem":"pypi","requirements":"1.1.1","direct":false,"kind":null,"optional":false},{"id":14075758815,"package_name":"cytominer-database","ecosystem":"pypi","requirements":"0.3.4","direct":false,"kind":null,"optional":false},{"id":14075758816,"package_name":"dbfread","ecosystem":"pypi","requirements":"2.0.7","direct":false,"kind":null,"optional":false},{"id":14075758817,"package_name":"distlib","ecosystem":"pypi","requirements":"0.3.7","direct":false,"kind":null,"optional":false},{"id":14075758818,"package_name":"docutils","ecosystem":"pypi","requirements":"0.20.1","direct":false,"kind":null,"optional":false},{"id":14075758819,"package_name":"et-xmlfile","ecosystem":"pypi","requirements":"1.1.0","direct":false,"kind":null,"optional":false},{"id":14075758820,"package_name":"exceptiongroup","ecosystem":"pypi","requirements":"1.1.2","direct":false,"kind":null,"optional":false},{"id":14075758821,"package_name":"filelock","ecosystem":"pypi","requirements":"3.12.2","direct":false,"kind":null,"optional":false},{"id":14075758822,"package_name":"fire","ecosystem":"pypi","requirements":"0.5.0","direct":false,"kind":null,"optional":false},{"id":14075758823,"package_name":"frozenlist","ecosystem":"pypi","requirements":"1.4.0","direct":false,"kind":null,"optional":false},{"id":14075758824,"package_name":"fsspec","ecosystem":"pypi","requirements":"2023.6.0","direct":false,"kind":null,"optional":false},{"id":14075758825,"package_name":"ghp-import","ecosystem":"pypi","requirements":"2.1.0","direct":false,"kind":null,"optional":false},{"id":14075758826,"package_name":"greenlet","ecosystem":"pypi","requirements":"2.0.2","direct":false,"kind":null,"optional":false},{"id":14075758827,"package_name":"identify","ecosystem":"pypi","requirements":"2.5.26","direct":false,"kind":null,"optional":false},{"id":14075758828,"package_name":"idna","ecosystem":"pypi","requirements":"3.4","direct":false,"kind":null,"optional":false},{"id":14075758829,"package_name":"imagesize","ecosystem":"pypi","requirements":"1.4.1","direct":false,"kind":null,"optional":false},{"id":14075758830,"package_name":"importlib-metadata","ecosystem":"pypi","requirements":"6.8.0","direct":false,"kind":null,"optional":false},{"id":14075758831,"package_name":"iniconfig","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":null,"optional":false},{"id":14075758832,"package_name":"isodate","ecosystem":"pypi","requirements":"0.6.1","direct":false,"kind":null,"optional":false},{"id":14075758833,"package_name":"jinja2","ecosystem":"pypi","requirements":"3.1.2","direct":false,"kind":null,"optional":false},{"id":14075758834,"package_name":"jmespath","ecosystem":"pypi","requirements":"1.0.1","direct":false,"kind":null,"optional":false},{"id":14075758835,"package_name":"joblib","ecosystem":"pypi","requirements":"1.3.1","direct":false,"kind":null,"optional":false},{"id":14075758836,"package_name":"leather","ecosystem":"pypi","requirements":"0.3.4","direct":false,"kind":null,"optional":false},{"id":14075758837,"package_name":"markdown","ecosystem":"pypi","requirements":"3.4.4","direct":false,"kind":null,"optional":false},{"id":14075758838,"package_name":"markupsafe","ecosystem":"pypi","requirements":"2.1.3","direct":false,"kind":null,"optional":false},{"id":14075758839,"package_name":"mergedeep","ecosystem":"pypi","requirements":"1.3.4","direct":false,"kind":null,"optional":false},{"id":14075758840,"package_name":"mkdocs","ecosystem":"pypi","requirements":"1.5.2","direct":false,"kind":null,"optional":false},{"id":14075758841,"package_name":"multidict","ecosystem":"pypi","requirements":"6.0.4","direct":false,"kind":null,"optional":false},{"id":14075758842,"package_name":"nodeenv","ecosystem":"pypi","requirements":"1.8.0","direct":false,"kind":null,"optional":false},{"id":14075758843,"package_name":"numpy","ecosystem":"pypi","requirements":"1.24.4","direct":false,"kind":null,"optional":false},{"id":14075758844,"package_name":"olefile","ecosystem":"pypi","requirements":"0.46","direct":false,"kind":null,"optional":false},{"id":14075758845,"package_name":"openpyxl","ecosystem":"pypi","requirements":"3.1.2","direct":false,"kind":null,"optional":false},{"id":14075758846,"package_name":"packaging","ecosystem":"pypi","requirements":"23.1","direct":false,"kind":null,"optional":false},{"id":14075758847,"package_name":"pandas","ecosystem":"pypi","requirements":"2.0.3","direct":false,"kind":null,"optional":false},{"id":14075758848,"package_name":"parsedatetime","ecosystem":"pypi","requirements":"2.6","direct":false,"kind":null,"optional":false},{"id":14075758849,"package_name":"pathspec","ecosystem":"pypi","requirements":"0.11.2","direct":false,"kind":null,"optional":false},{"id":14075758850,"package_name":"platformdirs","ecosystem":"pypi","requirements":"3.10.0","direct":false,"kind":null,"optional":false},{"id":14075758851,"package_name":"pluggy","ecosystem":"pypi","requirements":"1.2.0","direct":false,"kind":null,"optional":false},{"id":14075758852,"package_name":"pre-commit","ecosystem":"pypi","requirements":"3.3.3","direct":false,"kind":null,"optional":false},{"id":14075758853,"package_name":"pyarrow","ecosystem":"pypi","requirements":"12.0.1","direct":false,"kind":null,"optional":false},{"id":14075758854,"package_name":"pygments","ecosystem":"pypi","requirements":"2.16.1","direct":false,"kind":null,"optional":false},{"id":14075758855,"package_name":"pytest","ecosystem":"pypi","requirements":"7.4.0","direct":false,"kind":null,"optional":false},{"id":14075758856,"package_name":"pytest-cov","ecosystem":"pypi","requirements":"4.1.0","direct":false,"kind":null,"optional":false},{"id":14075758857,"package_name":"python-dateutil","ecosystem":"pypi","requirements":"2.8.2","direct":false,"kind":null,"optional":false},{"id":14075758858,"package_name":"python-slugify","ecosystem":"pypi","requirements":"8.0.1","direct":false,"kind":null,"optional":false},{"id":14075758859,"package_name":"pytimeparse","ecosystem":"pypi","requirements":"1.1.8","direct":false,"kind":null,"optional":false},{"id":14075758860,"package_name":"pytz","ecosystem":"pypi","requirements":"2023.3","direct":false,"kind":null,"optional":false},{"id":14075758861,"package_name":"pyyaml","ecosystem":"pypi","requirements":"6.0.1","direct":false,"kind":null,"optional":false},{"id":14075758862,"package_name":"pyyaml-env-tag","ecosystem":"pypi","requirements":"0.1","direct":false,"kind":null,"optional":false},{"id":14075758863,"package_name":"requests","ecosystem":"pypi","requirements":"2.31.0","direct":false,"kind":null,"optional":false},{"id":14075758864,"package_name":"s3fs","ecosystem":"pypi","requirements":"2023.6.0","direct":false,"kind":null,"optional":false},{"id":14075758865,"package_name":"s3transfer","ecosystem":"pypi","requirements":"0.6.1","direct":false,"kind":null,"optional":false},{"id":14075758866,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"1.3.0","direct":false,"kind":null,"optional":false},{"id":14075758867,"package_name":"scipy","ecosystem":"pypi","requirements":"1.9.3","direct":false,"kind":null,"optional":false},{"id":14075758868,"package_name":"setuptools","ecosystem":"pypi","requirements":"68.0.0","direct":false,"kind":null,"optional":false},{"id":14075758869,"package_name":"six","ecosystem":"pypi","requirements":"1.16.0","direct":false,"kind":null,"optional":false},{"id":14075758870,"package_name":"snowballstemmer","ecosystem":"pypi","requirements":"2.2.0","direct":false,"kind":null,"optional":false},{"id":14075758871,"package_name":"sphinx","ecosystem":"pypi","requirements":"7.1.2","direct":false,"kind":null,"optional":false},{"id":14075758872,"package_name":"sphinxcontrib-applehelp","ecosystem":"pypi","requirements":"1.0.4","direct":false,"kind":null,"optional":false},{"id":14075758873,"package_name":"sphinxcontrib-devhelp","ecosystem":"pypi","requirements":"1.0.2","direct":false,"kind":null,"optional":false},{"id":14075758874,"package_name":"sphinxcontrib-htmlhelp","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":null,"optional":false},{"id":14075758875,"package_name":"sphinxcontrib-jsmath","ecosystem":"pypi","requirements":"1.0.1","direct":false,"kind":null,"optional":false},{"id":14075758876,"package_name":"sphinxcontrib-qthelp","ecosystem":"pypi","requirements":"1.0.3","direct":false,"kind":null,"optional":false},{"id":14075758877,"package_name":"sphinxcontrib-serializinghtml","ecosystem":"pypi","requirements":"1.1.5","direct":false,"kind":null,"optional":false},{"id":14075758878,"package_name":"sqlalchemy","ecosystem":"pypi","requirements":"1.4.49","direct":false,"kind":null,"optional":false},{"id":14075758879,"package_name":"termcolor","ecosystem":"pypi","requirements":"2.3.0","direct":false,"kind":null,"optional":false},{"id":14075758880,"package_name":"text-unidecode","ecosystem":"pypi","requirements":"1.3","direct":false,"kind":null,"optional":false},{"id":14075758881,"package_name":"threadpoolctl","ecosystem":"pypi","requirements":"3.2.0","direct":false,"kind":null,"optional":false},{"id":14075758882,"package_name":"tomli","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":null,"optional":false},{"id":14075758883,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"4.7.1","direct":false,"kind":null,"optional":false},{"id":14075758884,"package_name":"tzdata","ecosystem":"pypi","requirements":"2023.3","direct":false,"kind":null,"optional":false},{"id":14075758885,"package_name":"urllib3","ecosystem":"pypi","requirements":"1.26.16","direct":false,"kind":null,"optional":false},{"id":14075758886,"package_name":"virtualenv","ecosystem":"pypi","requirements":"20.24.2","direct":false,"kind":null,"optional":false},{"id":14075758887,"package_name":"watchdog","ecosystem":"pypi","requirements":"3.0.0","direct":false,"kind":null,"optional":false},{"id":14075758888,"package_name":"wrapt","ecosystem":"pypi","requirements":"1.15.0","direct":false,"kind":null,"optional":false},{"id":14075758889,"package_name":"xlrd","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":null,"optional":false},{"id":14075758890,"package_name":"yarl","ecosystem":"pypi","requirements":"1.9.2","direct":false,"kind":null,"optional":false},{"id":14075758891,"package_name":"zipp","ecosystem":"pypi","requirements":"3.16.2","direct":false,"kind":null,"optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-10-03T08:00:30.715Z","updated_at":"2023-10-03T08:00:30.715Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/pyproject.toml","dependencies":[{"id":14075760183,"package_name":"python","ecosystem":"pypi","requirements":"\u003e=3.8","direct":true,"kind":"runtime","optional":false},{"id":14075760184,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.16.5","direct":true,"kind":"runtime","optional":false},{"id":14075760185,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.5","direct":true,"kind":"runtime","optional":false},{"id":14075760186,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=1.2.0","direct":true,"kind":"runtime","optional":false},{"id":14075760187,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.21.2","direct":true,"kind":"runtime","optional":false},{"id":14075760188,"package_name":"sqlalchemy","ecosystem":"pypi","requirements":"\u003e=1.3.6, \u003c2","direct":true,"kind":"runtime","optional":false},{"id":14075760189,"package_name":"pyarrow","ecosystem":"pypi","requirements":"\u003e=8.0.0","direct":true,"kind":"runtime","optional":false},{"id":14075760190,"package_name":"fsspec","ecosystem":"pypi","requirements":"\u003e=2023.1.0","direct":true,"kind":"runtime","optional":false},{"id":14075760191,"package_name":"s3fs","ecosystem":"pypi","requirements":"\u003e=0.4.2","direct":true,"kind":"runtime","optional":false},{"id":14075760192,"package_name":"boto3","ecosystem":"pypi","requirements":"\u003e=1.26.79","direct":true,"kind":"runtime","optional":false},{"id":14075760193,"package_name":"fire","ecosystem":"pypi","requirements":"\u003e=0.5.0","direct":true,"kind":"runtime","optional":false},{"id":14075760194,"package_name":"cytominer-database","ecosystem":"pypi","requirements":"0.3.4","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/docs-preview.yml","sha":null,"kind":"manifest","created_at":"2023-10-27T20:22:52.627Z","updated_at":"2023-10-27T20:22:52.627Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/.github/workflows/docs-preview.yml","dependencies":[{"id":14285681750,"package_name":"readthedocs/actions/preview","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/actions/setup-env/action.yaml","sha":null,"kind":"manifest","created_at":"2023-11-07T14:44:00.184Z","updated_at":"2023-11-07T14:44:00.184Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/.github/actions/setup-env/action.yaml","dependencies":[{"id":14355300489,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14355300490,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/integration-test.yml","sha":null,"kind":"manifest","created_at":"2023-11-07T14:44:00.208Z","updated_at":"2023-11-07T14:44:00.208Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/.github/workflows/integration-test.yml","dependencies":[{"id":14355300494,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14355300495,"package_name":"./.github/actions/setup-env","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false},{"id":14355301514,"package_name":"pre-commit/action","ecosystem":"actions","requirements":"v3.0.0","direct":true,"kind":"composite","optional":false},{"id":14355301515,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pypi-release.yml","sha":null,"kind":"manifest","created_at":"2023-11-07T14:44:01.393Z","updated_at":"2023-11-07T14:44:01.393Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/.github/workflows/pypi-release.yml","dependencies":[{"id":14355301516,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14355301517,"package_name":"./.github/actions/setup-env","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false},{"id":14355301518,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"build/docker/Dockerfile","sha":null,"kind":"manifest","created_at":"2024-03-23T03:37:46.606Z","updated_at":"2024-03-23T03:37:46.606Z","repository_link":"https://github.com/cytomining/pycytominer/blob/main/build/docker/Dockerfile","dependencies":[{"id":16991013514,"package_name":"python","ecosystem":"docker","requirements":"3.11","direct":true,"kind":"build","optional":false},{"id":16991013515,"package_name":"base","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false},{"id":16991013516,"package_name":"production","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]}],"score":16.00489470149275,"created_at":"2025-09-04T15:51:09.317Z","updated_at":"2025-10-07T08:14:51.441Z","avatar_url":"https://github.com/cytomining.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":1791,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/s41592-025-02611-8","https://doi.org/10.1101/2025.06.19.660613"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["profiling","cytomining","optimizing-compiler","quality-control","microscopy-image-analysis","image-based-profiling","hetnet","handbook","guide","mesh"],"project_url":"https://science.ecosyste.ms/api/v1/projects/35805","html_url":"https://science.ecosyste.ms/projects/35805"}