{"id":36924,"name":"rnaflow","description":"A simple RNA-Seq differential gene expression pipeline using Nextflow","url":"https://github.com/hoelzer-lab/rnaflow","last_synced_at":"2025-09-05T07:17:02.066Z","repository":{"id":39586891,"uuid":"212186454","full_name":"hoelzer-lab/rnaflow","owner":"hoelzer-lab","description":"A simple RNA-Seq differential gene expression pipeline using Nextflow","archived":false,"fork":false,"pushed_at":"2025-07-04T14:45:37.000Z","size":192282,"stargazers_count":101,"open_issues_count":50,"forks_count":22,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-07-04T16:08:40.627Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hoelzer-lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"citations.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-10-01T19:50:29.000Z","updated_at":"2025-06-27T05:03:07.000Z","dependencies_parsed_at":"2023-02-18T05:46:07.095Z","dependency_job_id":"eb3e25bf-bec9-471a-b87e-75497d13234f","html_url":"https://github.com/hoelzer-lab/rnaflow","commit_stats":{"total_commits":665,"total_committers":10,"mean_commits":66.5,"dds":0.5954887218045113,"last_synced_commit":"094be4d097cb1e7d759688f5159191fa7451363b"},"previous_names":[],"tags_count":24,"template":false,"template_full_name":null,"purl":"pkg:github/hoelzer-lab/rnaflow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hoelzer-lab","download_url":"https://codeload.github.com/hoelzer-lab/rnaflow/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273724189,"owners_count":25156483,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"hoelzer-lab","name":"hoelzer-lab","uuid":"41161968","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/41161968?v=4","repositories_count":4,"last_synced_at":"2023-03-08T18:08:44.649Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/hoelzer-lab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-18T08:32:16.614Z","updated_at":"2023-03-08T18:08:44.661Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hoelzer-lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hoelzer-lab/repositories"},"packages":[],"commits":{"id":1440038,"full_name":"hoelzer-lab/rnaflow","default_branch":"master","committers":[{"name":"MarieLataretu","email":"marie.lataretu@uni-jena.de","login":null,"count":269},{"name":"David Fischer","email":"davidfischer99@gmx.de","login":null,"count":197},{"name":"hoelzer","email":"hoelzer.martin@gmail.com","login":null,"count":143},{"name":"David Fischer","email":"85546373+fischer-hub","login":"fischer-hub","count":24},{"name":"MarieLataretu","email":"52002068+MarieLataretu","login":"MarieLataretu","count":19},{"name":"Florian Mock","email":"florian_mock91@web.de","login":null,"count":4},{"name":"Martin Hölzer","email":"martin@Martins-Air.fritz.box","login":null,"count":3},{"name":"David","email":"you@example.com","login":"invalid-email-address","count":3},{"name":"martin","email":"martin@martins-Air.fritz.box","login":null,"count":2},{"name":"Florian Mock","email":"florian.mock@uni-jena.de","login":null,"count":1}],"total_commits":665,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":66.5,"dds":0.5954887218045113,"past_year_committers":[{"name":"David Fischer","email":"davidfischer99@gmx.de","login":null,"count":19},{"name":"Martin Hölzer","email":"hoelzer.martin@gmail.com","login":null,"count":2},{"name":"martin","email":"martin@martins-Air.fritz.box","login":null,"count":2}],"past_year_total_commits":23,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":7.666666666666667,"past_year_dds":0.17391304347826086,"last_synced_at":"2023-10-26T13:05:34.765Z","last_synced_commit":"094be4d097cb1e7d759688f5159191fa7451363b","created_at":"2023-10-26T12:59:46.361Z","updated_at":"2023-10-26T13:05:34.766Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"hoelzer-lab/rnaflow","html_url":"https://github.com/hoelzer-lab/rnaflow","last_synced_at":"2025-08-31T11:16:58.292Z","status":null,"issues_count":8,"pull_requests_count":8,"avg_time_to_close_issue":3434005.0,"avg_time_to_close_pull_request":3956322.75,"issues_closed_count":7,"pull_requests_closed_count":8,"pull_request_authors_count":3,"issue_authors_count":5,"avg_comments_per_issue":6.75,"avg_comments_per_pull_request":0.375,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":8,"past_year_pull_requests_count":7,"past_year_avg_time_to_close_issue":3434005.0,"past_year_avg_time_to_close_pull_request":234518.0,"past_year_issues_closed_count":7,"past_year_pull_requests_closed_count":7,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":6.75,"past_year_avg_comments_per_pull_request":0.2857142857142857,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":6,"created_at":"2025-08-29T13:58:39.844Z","updated_at":"2025-09-03T06:05:12.575Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/hoelzer-lab%2Frnaflow/issues","issue_labels_count":{"enhancement":1,"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":13,"CONTRIBUTOR":4},"pull_request_author_associations_count":{"CONTRIBUTOR":6,"NONE":2},"issue_authors":{"hoelzer":4,"Artifice120":4,"DAWells":1,"m-jahani":1,"zhangwenda0518":1,"kheinze":1,"chrissikath":1,"AnneBoshove":1,"mglgc":1,"brennovmh":1,"uludag":1},"pull_request_authors":{"hoelzer":6,"AggressiveHayBale":1,"ntvy-hcmus":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10087320,"issues_count":31306968,"pull_requests_count":96469683,"authors_count":10696025,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":8,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":4,"NONE":2},"past_year_issue_authors":{"Artifice120":4,"brennovmh":1,"chrissikath":1,"hoelzer":1,"kheinze":1,"uludag":1},"past_year_pull_request_authors":{"hoelzer":4,"AggressiveHayBale":1,"ntvy-hcmus":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CreateEvent":9,"ReleaseEvent":6,"IssuesEvent":13,"WatchEvent":10,"IssueCommentEvent":54,"PushEvent":14,"PullRequestEvent":12,"ForkEvent":2},"last_year":{"CreateEvent":9,"ReleaseEvent":6,"IssuesEvent":13,"WatchEvent":10,"IssueCommentEvent":54,"PushEvent":14,"PullRequestEvent":12,"ForkEvent":2}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/nextflow-test.yml","sha":null,"kind":"manifest","created_at":"2023-02-18T05:46:06.993Z","updated_at":"2023-02-18T05:46:06.993Z","repository_link":"https://github.com/hoelzer-lab/rnaflow/blob/master/.github/workflows/nextflow-test.yml","dependencies":[{"id":7754930089,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":7.31986492980897,"created_at":"2025-09-04T15:51:10.581Z","updated_at":"2025-10-07T08:15:13.945Z","avatar_url":"https://github.com/hoelzer-lab.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.3390/genes11121487"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/36924","html_url":"https://science.ecosyste.ms/projects/36924","bibtex_url":"https://science.ecosyste.ms/projects/36924/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/36924/export.apalike"}