{"id":37431,"name":"wfexs-backend","description":"Workflow Execution Service Backend","url":"https://github.com/inab/wfexs-backend","last_synced_at":"2025-09-05T07:26:31.768Z","repository":{"id":44631747,"uuid":"301434294","full_name":"inab/WfExS-backend","owner":"inab","description":"Workflow Execution Service Backend","archived":false,"fork":false,"pushed_at":"2025-08-25T12:11:35.000Z","size":6415,"stargazers_count":18,"open_issues_count":25,"forks_count":6,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-08-25T14:24:10.243Z","etag":null,"topics":["ejp-rd","eosc-entrust","eosc-life","research-object","wfexs","workflows"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/inab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-10-05T14:21:59.000Z","updated_at":"2025-08-11T13:54:04.000Z","dependencies_parsed_at":"2023-02-08T18:16:26.935Z","dependency_job_id":"329dc026-4d39-48e8-8d3b-bd30782207c8","html_url":"https://github.com/inab/WfExS-backend","commit_stats":null,"previous_names":[],"tags_count":53,"template":false,"template_full_name":null,"purl":"pkg:github/inab/WfExS-backend","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2FWfExS-backend","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2FWfExS-backend/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2FWfExS-backend/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2FWfExS-backend/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inab","download_url":"https://codeload.github.com/inab/WfExS-backend/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2FWfExS-backend/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273725892,"owners_count":25156814,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"inab","name":"Spanish National Bioinformatics Institute","uuid":"3019853","kind":"organization","description":"Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO","email":"salvador.capella@bsc.es","website":"https://inb-elixir.es","location":"Spain","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/3019853?v=4","repositories_count":172,"last_synced_at":"2024-04-14T11:15:47.926Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/inab","funding_links":[],"total_stars":259,"followers":9,"following":0,"created_at":"2022-11-02T19:10:41.630Z","updated_at":"2024-04-14T11:16:37.790Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inab/repositories"},"packages":[],"commits":{"id":4868567,"full_name":"inab/wfexs-backend","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-10T02:19:35.308Z","updated_at":"2024-11-10T02:19:35.308Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2Fwfexs-backend/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"inab/wfexs-backend","html_url":"https://github.com/inab/wfexs-backend","last_synced_at":"2025-09-01T15:04:34.919Z","status":null,"issues_count":64,"pull_requests_count":140,"avg_time_to_close_issue":11888771.666666666,"avg_time_to_close_pull_request":478280.87401574804,"issues_closed_count":36,"pull_requests_closed_count":127,"pull_request_authors_count":7,"issue_authors_count":9,"avg_comments_per_issue":1.03125,"avg_comments_per_pull_request":0.09285714285714286,"merged_pull_requests_count":112,"bot_issues_count":0,"bot_pull_requests_count":72,"past_year_issues_count":25,"past_year_pull_requests_count":59,"past_year_avg_time_to_close_issue":1396906.6,"past_year_avg_time_to_close_pull_request":426874.78,"past_year_issues_closed_count":15,"past_year_pull_requests_closed_count":50,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.68,"past_year_avg_comments_per_pull_request":0.03389830508474576,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":29,"past_year_merged_pull_requests_count":43,"created_at":"2024-11-10T02:19:38.426Z","updated_at":"2025-09-03T04:48:08.578Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2Fwfexs-backend","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/inab%2Fwfexs-backend/issues","issue_labels_count":{"enhancement":24,"bug":13,"documentation":3,"janitorial":2,"wontfix":1,"dependencies":1},"pull_request_labels_count":{"dependencies":7,"github_actions":7,"enhancement":2},"issue_author_associations_count":{"MEMBER":55,"CONTRIBUTOR":8,"NONE":6,"COLLABORATOR":1},"pull_request_author_associations_count":{"CONTRIBUTOR":93,"MEMBER":74,"COLLABORATOR":6,"NONE":1},"issue_authors":{"jmfernandez":55,"dcl10":5,"wkwi2r":3,"lrodrin":2,"paulaidt":1,"kbarrass1252":1,"stain":1,"vschnei":1,"kinow":1},"pull_request_authors":{"github-actions[bot]":79,"jmfernandez":74,"dependabot[bot]":7,"paulaidt":6,"dcl10":3,"stain":3,"Acivico":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10078922,"issues_count":31312308,"pull_requests_count":96079417,"authors_count":10692483,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":12,"bug":8,"janitorial":2,"dependencies":1,"documentation":1},"past_year_pull_request_labels_count":{"dependencies":7,"github_actions":7},"past_year_issue_author_associations_count":{"MEMBER":25,"NONE":4,"COLLABORATOR":1},"past_year_pull_request_author_associations_count":{"MEMBER":37,"CONTRIBUTOR":34,"NONE":1,"COLLABORATOR":1},"past_year_issue_authors":{"jmfernandez":25,"wkwi2r":3,"kbarrass1252":1,"paulaidt":1},"past_year_pull_request_authors":{"jmfernandez":37,"github-actions[bot]":28,"dependabot[bot]":7,"paulaidt":1},"maintainers":[{"login":"jmfernandez","count":129,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jmfernandez"},{"login":"paulaidt","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/paulaidt"}],"active_maintainers":[{"login":"jmfernandez","count":62,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jmfernandez"},{"login":"paulaidt","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/paulaidt"}]},"events":{"total":{"CreateEvent":46,"ReleaseEvent":2,"IssuesEvent":46,"WatchEvent":2,"DeleteEvent":38,"IssueCommentEvent":31,"PushEvent":183,"PullRequestReviewEvent":1,"PullRequestEvent":108},"last_year":{"CreateEvent":46,"ReleaseEvent":2,"IssuesEvent":46,"WatchEvent":2,"DeleteEvent":38,"IssueCommentEvent":31,"PushEvent":183,"PullRequestReviewEvent":1,"PullRequestEvent":108}},"keywords":["ejp-rd","eosc-entrust","eosc-life","research-object","wfexs","workflows"],"dependencies":[{"ecosystem":"pypi","filepath":"dev-requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-27T06:51:28.011Z","updated_at":"2022-08-27T06:51:28.011Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/dev-requirements.txt","dependencies":[{"id":2898789126,"package_name":"pylint","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789127,"package_name":"pyflakes","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789128,"package_name":"mypy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789129,"package_name":"json-schema-for-humans","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789130,"package_name":"types-boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789131,"package_name":"types-certifi","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789132,"package_name":"types-jsonschema","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789133,"package_name":"types-paramiko","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789134,"package_name":"types-PyYAML","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":2898789135,"package_name":"types-requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false}]},{"ecosystem":"pypi","filepath":"fetchers-tests/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-27T06:51:28.108Z","updated_at":"2022-08-27T06:51:28.108Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/fetchers-tests/requirements.txt","dependencies":[{"id":2898790476,"package_name":"PyWebDAV3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"test","optional":false},{"id":2898790478,"package_name":"pyftpdlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"test","optional":false},{"id":2898790480,"package_name":"sftpserver","ecosystem":"pypi","requirements":"*","direct":true,"kind":"test","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-27T06:51:28.244Z","updated_at":"2022-08-27T06:51:28.244Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/requirements.txt","dependencies":[{"id":2898791053,"package_name":"pyyaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791054,"package_name":"jsonpath-ng","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791055,"package_name":"jsonschema","ecosystem":"pypi","requirements":"\u003e=3.0.0","direct":true,"kind":"runtime","optional":false},{"id":2898791056,"package_name":"paramiko","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791057,"package_name":"certifi","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791058,"package_name":"crypt4gh","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791059,"package_name":"pwgen-passphrase","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791060,"package_name":"bagit","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791061,"package_name":"aioftp","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791062,"package_name":"openpyxl","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791063,"package_name":"xlrd2","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791064,"package_name":"dulwich","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791065,"package_name":"python-dxf","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791066,"package_name":"genluhn","ecosystem":"pypi","requirements":"\u003e=0.3.0","direct":true,"kind":"runtime","optional":false},{"id":2898791067,"package_name":"rfc6920","ecosystem":"pypi","requirements":"\u003e=0.1.2","direct":true,"kind":"runtime","optional":false},{"id":2898791068,"package_name":"rocrate","ecosystem":"pypi","requirements":"\u003e=0.5.2","direct":true,"kind":"runtime","optional":false},{"id":2898791069,"package_name":"boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791070,"package_name":"botocore","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791071,"package_name":"google-cloud-storage","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791072,"package_name":"typing_extensions","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2898791073,"package_name":"pyncclient-ext","ecosystem":"pypi","requirements":"\u003e=0.1.1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pre-commit.yml","sha":null,"kind":"manifest","created_at":"2023-02-08T18:16:26.571Z","updated_at":"2023-02-08T18:16:26.571Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/.github/workflows/pre-commit.yml","dependencies":[{"id":7463711206,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7463711211,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":7463711214,"package_name":"pilosus/action-pip-license-checker","ecosystem":"actions","requirements":"v0.6.3","direct":true,"kind":"composite","optional":false},{"id":7463711218,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7463711221,"package_name":"pre-commit/action","ecosystem":"actions","requirements":"v3.0.0","direct":true,"kind":"composite","optional":false},{"id":7463711224,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7463711227,"package_name":"tj-actions/changed-files","ecosystem":"actions","requirements":"v34","direct":true,"kind":"composite","optional":false},{"id":7463711230,"package_name":"actions/download-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7463711233,"package_name":"peter-evans/create-pull-request","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"mypy-requirements.txt","sha":null,"kind":"manifest","created_at":"2023-02-08T18:16:26.705Z","updated_at":"2023-02-08T18:16:26.705Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/mypy-requirements.txt","dependencies":[{"id":7463711873,"package_name":"types-boto3","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711874,"package_name":"types-certifi","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711875,"package_name":"types-jsonschema","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711876,"package_name":"types-mypy-extensions","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711877,"package_name":"types-openpyxl","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711878,"package_name":"types-paramiko","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711879,"package_name":"types-PyYAML","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711880,"package_name":"types-requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463711881,"package_name":"types-setuptools","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements-additional-3.6.txt","sha":null,"kind":"manifest","created_at":"2023-02-08T18:16:26.774Z","updated_at":"2023-02-08T18:16:26.774Z","repository_link":"https://github.com/inab/WfExS-backend/blob/main/requirements-additional-3.6.txt","dependencies":[{"id":7463713499,"package_name":"dataclasses","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":7463713502,"package_name":"types-dataclasses","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:11.150Z","updated_at":"2025-10-07T08:15:24.547Z","avatar_url":"https://github.com/inab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.6567591","https://doi.org/10.7490/f1000research.1119725.1","https://doi.org/10.7490/f1000research.1119724.1","https://doi.org/10.37044/osf.io/7f94w","https://doi.org/10.48550/arXiv.2312.07852","https://doi.org/10.7490/f1000research.1119457.1","https://doi.org/10.7490/f1000research.1119198.1","https://doi.org/10.5281/zenodo.4705078","https://doi.org/10.5281/zenodo.12588049","https://doi.org/10.5281/zenodo.12622362"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/37431","html_url":"https://science.ecosyste.ms/projects/37431","bibtex_url":"https://science.ecosyste.ms/projects/37431/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/37431/export.apalike"}