{"id":37592,"name":"bibsnet","description":"This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model.  It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.","url":"https://github.com/dcan-labs/bibsnet","last_synced_at":"2025-09-05T07:30:18.056Z","repository":{"id":45748199,"uuid":"427489916","full_name":"DCAN-Labs/BIBSnet","owner":"DCAN-Labs","description":"This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model.  It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.","archived":false,"fork":false,"pushed_at":"2025-08-20T23:03:41.000Z","size":570068,"stargazers_count":7,"open_issues_count":18,"forks_count":9,"subscribers_count":9,"default_branch":"main","last_synced_at":"2025-08-20T23:39:50.807Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://bibsnet.readthedocs.io/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DCAN-Labs.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2021-11-12T20:36:20.000Z","updated_at":"2025-08-11T01:54:26.000Z","dependencies_parsed_at":"2023-02-18T09:30:59.639Z","dependency_job_id":"2f8f820a-a569-49d9-b410-db3ccea72caf","html_url":"https://github.com/DCAN-Labs/BIBSnet","commit_stats":null,"previous_names":[],"tags_count":30,"template":false,"template_full_name":null,"purl":"pkg:github/DCAN-Labs/BIBSnet","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DCAN-Labs","download_url":"https://codeload.github.com/DCAN-Labs/BIBSnet/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273727091,"owners_count":25157078,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"DCAN-Labs","name":"Developmental Cognition and Neuroimaging Labs","uuid":"35277649","kind":"organization","description":"Our lab uses MRI to examine typical and atypical brain development. Our research is examining children with ASD as well as children and adults with ADHD.","email":null,"website":"https://innovation.umn.edu/developmental-cognition-and-neuroimaging-lab/","location":"United States of America","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/35277649?v=4","repositories_count":42,"last_synced_at":"2023-02-28T22:25:28.176Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/DCAN-Labs","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T23:14:57.835Z","updated_at":"2023-02-28T22:25:28.221Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DCAN-Labs","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DCAN-Labs/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"DCAN-Labs/BIBSnet","html_url":"https://github.com/DCAN-Labs/BIBSnet","last_synced_at":"2025-08-31T15:53:43.515Z","status":null,"issues_count":11,"pull_requests_count":3,"avg_time_to_close_issue":6661646.0,"avg_time_to_close_pull_request":950409.0,"issues_closed_count":3,"pull_requests_closed_count":1,"pull_request_authors_count":2,"issue_authors_count":6,"avg_comments_per_issue":0.7272727272727273,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":10,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":1251149.5,"past_year_avg_time_to_close_pull_request":950409.0,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":0.7,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2025-07-16T13:07:17.827Z","updated_at":"2025-09-02T23:03:45.278Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DCAN-Labs%2FBIBSnet/issues","issue_labels_count":{"enhancement":21,"bug":16,"question":6,"documentation":3,"low priority":3,"good first issue":3},"pull_request_labels_count":{"enhancement":3},"issue_author_associations_count":{"CONTRIBUTOR":23,"NONE":16,"MEMBER":4,"COLLABORATOR":3},"pull_request_author_associations_count":{"CONTRIBUTOR":23,"MEMBER":4,"NONE":3,"COLLABORATOR":3},"issue_authors":{"LuciMoore":22,"kellyhi08":4,"scott-huberty":3,"erikglee":3,"tikal004":2,"dnkennedy":2,"lundq163":1,"yanbin-niu":1,"moser297":1,"sb8498":1,"sallystoyell":1,"dcdeaniii":1,"henrycikanek":1,"mblesac":1,"pollaro":1,"shreyagudapati9":1},"pull_request_authors":{"LuciMoore":19,"lundq163":3,"joey-scanga":2,"scott-huberty":2,"audreymhoughton":2,"madisoth":2,"erikglee":1,"tikal004":1,"BarryTik":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10056049,"issues_count":30935695,"pull_requests_count":93179394,"authors_count":10671501,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":8,"enhancement":8,"question":1,"documentation":1},"past_year_pull_request_labels_count":{"enhancement":1},"past_year_issue_author_associations_count":{"CONTRIBUTOR":10,"NONE":9},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":9,"NONE":1},"past_year_issue_authors":{"LuciMoore":9,"kellyhi08":2,"scott-huberty":2,"dnkennedy":1,"mblesac":1,"pollaro":1,"sallystoyell":1,"sb8498":1,"yanbin-niu":1},"past_year_pull_request_authors":{"LuciMoore":7,"joey-scanga":1,"madisoth":1,"scott-huberty":1},"maintainers":[{"login":"lundq163","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lundq163"},{"login":"erikglee","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/erikglee"},{"login":"tikal004","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tikal004"},{"login":"audreymhoughton","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/audreymhoughton"},{"login":"moser297","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/moser297"}],"active_maintainers":[]},"events":{"total":{"CreateEvent":8,"ReleaseEvent":2,"IssuesEvent":19,"WatchEvent":3,"DeleteEvent":8,"IssueCommentEvent":32,"PushEvent":63,"PullRequestReviewEvent":1,"PullRequestEvent":12,"ForkEvent":1},"last_year":{"CreateEvent":8,"ReleaseEvent":2,"IssuesEvent":19,"WatchEvent":3,"DeleteEvent":8,"IssueCommentEvent":32,"PushEvent":63,"PullRequestReviewEvent":1,"PullRequestEvent":12,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-12T12:10:28.083Z","updated_at":"2022-08-12T12:10:28.083Z","repository_link":"https://github.com/DCAN-Labs/BIBSnet/blob/main/requirements.txt","dependencies":[{"id":1323967266,"package_name":"nibabel","ecosystem":"pypi","requirements":"==3.2.1","direct":true,"kind":"runtime","optional":false},{"id":1323967267,"package_name":"nipype","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"runtime","optional":false},{"id":1323967268,"package_name":"pandas","ecosystem":"pypi","requirements":"==1.3.5","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/docker-publish.yml","sha":null,"kind":"manifest","created_at":"2023-01-28T17:15:56.014Z","updated_at":"2023-01-28T17:15:56.014Z","repository_link":"https://github.com/DCAN-Labs/BIBSnet/blob/main/.github/workflows/docker-publish.yml","dependencies":[{"id":7211904000,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7211904001,"package_name":"sigstore/cosign-installer","ecosystem":"actions","requirements":"f3c664df7af409cb4873aa5068053ba9d61a57b6","direct":true,"kind":"composite","optional":false},{"id":7211904002,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"79abd3f86f79a9d68a23c75a09a9a85889262adf","direct":true,"kind":"composite","optional":false},{"id":7211904003,"package_name":"docker/login-action","ecosystem":"actions","requirements":"28218f9b04b4f3f62068d7b6ce6ca5b26e35336c","direct":true,"kind":"composite","optional":false},{"id":7211904004,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"98669ae865ea3cffbcbaa878cf57c20bbf1c6c38","direct":true,"kind":"composite","optional":false},{"id":7211904005,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"ac9327eae2b366085ac7f6a2d02df8aa8ead720a","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-28T17:15:57.817Z","updated_at":"2023-01-28T17:15:57.817Z","repository_link":"https://github.com/DCAN-Labs/BIBSnet/blob/main/Dockerfile","dependencies":[{"id":7211905414,"package_name":"${FROM_IMAGE_NAME}","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"rtd-requirements.txt","sha":null,"kind":"manifest","created_at":"2023-02-18T09:30:59.544Z","updated_at":"2023-02-18T09:30:59.544Z","repository_link":"https://github.com/DCAN-Labs/BIBSnet/blob/main/rtd-requirements.txt","dependencies":[{"id":7758836761,"package_name":"mkdocs-material","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:11.403Z","updated_at":"2025-10-07T08:15:27.863Z","avatar_url":"https://github.com/DCAN-Labs.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.7019701"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/37592","html_url":"https://science.ecosyste.ms/projects/37592"}