{"id":37769,"name":"tutorials-late","description":"Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.","url":"https://github.com/epiverse-trace/tutorials-late","last_synced_at":"2025-09-05T07:33:14.310Z","repository":{"id":221498720,"uuid":"754543926","full_name":"epiverse-trace/tutorials-late","owner":"epiverse-trace","description":"Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.","archived":false,"fork":false,"pushed_at":"2025-09-02T01:11:57.000Z","size":21230,"stargazers_count":2,"open_issues_count":39,"forks_count":2,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-09-02T03:19:52.337Z","etag":null,"topics":["burden-of-disease","carpentries-workbench","contact-matrices","contact-matrix","epiverse","infectious-disease-dynamics","non-pharmaceutical-interventions","outbreak-analysis","rstats","scenario-modelling","vaccination"],"latest_commit_sha":null,"homepage":"https://epiverse-trace.github.io/tutorials-late/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/epiverse-trace.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2024-02-08T09:31:24.000Z","updated_at":"2025-08-19T15:01:40.000Z","dependencies_parsed_at":"2024-02-27T02:29:43.420Z","dependency_job_id":"af5b8d69-786c-4bb5-8e7e-d2c464f75e88","html_url":"https://github.com/epiverse-trace/tutorials-late","commit_stats":null,"previous_names":["epiverse-trace/tutorials-late"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/epiverse-trace/tutorials-late","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epiverse-trace","download_url":"https://codeload.github.com/epiverse-trace/tutorials-late/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273727431,"owners_count":25157130,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"epiverse-trace","name":"Epiverse-TRACE","uuid":"101338582","kind":"organization","description":"","email":null,"website":"https://epiverse.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/101338582?v=4","repositories_count":17,"last_synced_at":"2023-03-06T22:51:50.116Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/epiverse-trace","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T23:02:56.947Z","updated_at":"2023-03-06T22:51:50.140Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epiverse-trace","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epiverse-trace/repositories"},"packages":[],"commits":{"id":7149323,"full_name":"epiverse-trace/tutorials-late","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-12-02T00:34:50.616Z","updated_at":"2024-12-02T00:34:50.616Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"epiverse-trace/tutorials-late","html_url":"https://github.com/epiverse-trace/tutorials-late","last_synced_at":"2025-08-31T09:28:37.449Z","status":null,"issues_count":47,"pull_requests_count":54,"avg_time_to_close_issue":6116312.166666667,"avg_time_to_close_pull_request":1462643.5853658537,"issues_closed_count":12,"pull_requests_closed_count":41,"pull_request_authors_count":7,"issue_authors_count":5,"avg_comments_per_issue":0.3617021276595745,"avg_comments_per_pull_request":1.1481481481481481,"merged_pull_requests_count":36,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":14,"past_year_pull_requests_count":43,"past_year_avg_time_to_close_issue":16930595.0,"past_year_avg_time_to_close_pull_request":1166473.6333333333,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":30,"past_year_pull_request_authors_count":7,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.2857142857142857,"past_year_avg_comments_per_pull_request":0.8837209302325582,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":28,"created_at":"2024-12-02T00:34:55.177Z","updated_at":"2025-09-03T04:56:08.721Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/epiverse-trace%2Ftutorials-late/issues","issue_labels_count":{"enhancement":6,"post-trial":5,"upcoming-training":5,"bug":3,"hackathon":2,"documentation":1,"priority":1},"pull_request_labels_count":{"type: package cache":10,"upcoming-training":4,"type: template and tools":3,"post-trial":2},"issue_author_associations_count":{"MEMBER":41,"CONTRIBUTOR":4,"COLLABORATOR":4},"pull_request_author_associations_count":{"MEMBER":57,"COLLABORATOR":10,"CONTRIBUTOR":4,"NONE":3},"issue_authors":{"avallecam":37,"amanda-minter":5,"adamkucharski":3,"Degoot-AM":3,"Bisaloo":1},"pull_request_authors":{"avallecam":36,"Bisaloo":18,"amanda-minter":10,"Degoot-AM":4,"epiverse-trace-bot":3,"jamesmbaazam":2,"adamkucharski":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10074708,"issues_count":31280107,"pull_requests_count":95730442,"authors_count":10690872,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"hackathon":1,"bug":1,"priority":1},"past_year_pull_request_labels_count":{"type: package cache":10,"type: template and tools":3,"upcoming-training":2},"past_year_issue_author_associations_count":{"MEMBER":10,"COLLABORATOR":2,"CONTRIBUTOR":2},"past_year_pull_request_author_associations_count":{"MEMBER":36,"COLLABORATOR":10,"CONTRIBUTOR":4,"NONE":3},"past_year_issue_authors":{"avallecam":7,"adamkucharski":3,"amanda-minter":2,"Degoot-AM":2},"past_year_pull_request_authors":{"avallecam":17,"Bisaloo":16,"amanda-minter":10,"Degoot-AM":4,"epiverse-trace-bot":3,"jamesmbaazam":2,"adamkucharski":1},"maintainers":[{"login":"avallecam","count":73,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/avallecam"},{"login":"Bisaloo","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Bisaloo"},{"login":"amanda-minter","count":14,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/amanda-minter"},{"login":"adamkucharski","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adamkucharski"},{"login":"jamesmbaazam","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesmbaazam"}],"active_maintainers":[{"login":"avallecam","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/avallecam"},{"login":"Bisaloo","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Bisaloo"},{"login":"amanda-minter","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/amanda-minter"},{"login":"adamkucharski","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adamkucharski"},{"login":"jamesmbaazam","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesmbaazam"}]},"events":{"total":{"CreateEvent":61,"ReleaseEvent":1,"IssuesEvent":24,"DeleteEvent":61,"IssueCommentEvent":58,"PushEvent":300,"PullRequestEvent":68,"PullRequestReviewEvent":109,"PullRequestReviewCommentEvent":151,"ForkEvent":1},"last_year":{"CreateEvent":61,"ReleaseEvent":1,"IssuesEvent":24,"DeleteEvent":61,"IssueCommentEvent":58,"PushEvent":300,"PullRequestEvent":68,"PullRequestReviewEvent":109,"PullRequestReviewCommentEvent":151,"ForkEvent":1}},"keywords":["burden-of-disease","carpentries-workbench","contact-matrices","contact-matrix","epiverse","infectious-disease-dynamics","non-pharmaceutical-interventions","outbreak-analysis","rstats","scenario-modelling","vaccination"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/lint.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:28.442Z","updated_at":"2024-02-08T11:25:28.442Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/lint.yaml","dependencies":[{"id":16110141781,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110141782,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110141783,"package_name":"carpentries/actions/setup-sandpaper","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110141998,"package_name":"carpentries/actions/setup-lesson-deps","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142210,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-close-signal.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:29.310Z","updated_at":"2024-02-08T11:25:29.310Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/pr-close-signal.yaml","dependencies":[{"id":16110142227,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-comment.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:29.517Z","updated_at":"2024-02-08T11:25:29.517Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/pr-comment.yaml","dependencies":[{"id":16110142228,"package_name":"carpentries/actions/download-workflow-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142229,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142230,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110142231,"package_name":"carpentries/actions/comment-diff","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-post-remove-branch.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.070Z","updated_at":"2024-02-08T11:25:30.070Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/pr-post-remove-branch.yaml","dependencies":[{"id":16110142644,"package_name":"carpentries/actions/download-workflow-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142645,"package_name":"carpentries/actions/remove-branch","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-preflight.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.216Z","updated_at":"2024-02-08T11:25:30.216Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/pr-preflight.yaml","dependencies":[{"id":16110142667,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142668,"package_name":"carpentries/actions/comment-diff","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-receive.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.353Z","updated_at":"2024-02-08T11:25:30.353Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/pr-receive.yaml","dependencies":[{"id":16110142669,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110142670,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142671,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110142672,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110142673,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110142674,"package_name":"carpentries/actions/setup-sandpaper","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142675,"package_name":"carpentries/actions/setup-lesson-deps","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/sandpaper-main.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.492Z","updated_at":"2024-02-08T11:25:30.492Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/sandpaper-main.yaml","dependencies":[{"id":16110142676,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110142677,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110142678,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110142679,"package_name":"carpentries/actions/setup-sandpaper","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142680,"package_name":"carpentries/actions/setup-lesson-deps","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update-cache.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.678Z","updated_at":"2024-02-08T11:25:30.678Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/update-cache.yaml","dependencies":[{"id":16110142746,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110142747,"package_name":"carpentries/actions/check-valid-credentials","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142750,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16110142751,"package_name":"carpentries/actions/update-lockfile","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110142752,"package_name":"carpentries/create-pull-request","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update-workflows.yaml","sha":null,"kind":"manifest","created_at":"2024-02-08T11:25:30.915Z","updated_at":"2024-02-08T11:25:30.915Z","repository_link":"https://github.com/epiverse-trace/tutorials-late/blob/main/.github/workflows/update-workflows.yaml","dependencies":[{"id":16110143373,"package_name":"carpentries/actions/check-valid-credentials","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110143377,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16110143379,"package_name":"carpentries/actions/update-workflows","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":16110143381,"package_name":"carpentries/create-pull-request","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:11.595Z","updated_at":"2025-10-07T08:15:31.438Z","avatar_url":"https://github.com/epiverse-trace.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/37769","html_url":"https://science.ecosyste.ms/projects/37769","bibtex_url":"https://science.ecosyste.ms/projects/37769/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/37769/export.apalike"}