{"id":37778,"name":"spatial-transcriptomics","description":null,"url":"https://github.com/smcclatchy/spatial-transcriptomics","last_synced_at":"2025-09-05T07:35:07.638Z","repository":{"id":196532099,"uuid":"696321159","full_name":"smcclatchy/spatial-transcriptomics","owner":"smcclatchy","description":null,"archived":false,"fork":false,"pushed_at":"2025-09-02T01:48:51.000Z","size":1609737,"stargazers_count":0,"open_issues_count":28,"forks_count":3,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-09-02T03:28:16.556Z","etag":null,"topics":["10x-genomics","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://smcclatchy.github.io/spatial-transcriptomics/","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/smcclatchy.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-09-25T14:17:25.000Z","updated_at":"2025-08-12T15:58:08.000Z","dependencies_parsed_at":"2023-09-26T01:31:19.188Z","dependency_job_id":"e92a0bea-aff3-46a1-b8b2-da8e82e53948","html_url":"https://github.com/smcclatchy/spatial-transcriptomics","commit_stats":null,"previous_names":["smcclatchy/spatial-transcriptomics"],"tags_count":0,"template":false,"template_full_name":"carpentries/workbench-template-rmd","purl":"pkg:github/smcclatchy/spatial-transcriptomics","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smcclatchy","download_url":"https://codeload.github.com/smcclatchy/spatial-transcriptomics/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273727431,"owners_count":25157130,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"smcclatchy","name":"Sue McClatchy","uuid":"10601380","kind":"user","description":"I do bioinformatics @TheJacksonLaboratory. ","email":"","website":"https://www.jax.org/people/susan-mcclatchy","location":"Bar Harbor, Maine","twitter":"SueMcclatchy","company":"@TheJacksonLaboratory","icon_url":"https://avatars.githubusercontent.com/u/10601380?u=aff81d28d3a8874fc123ad03ab122cda1dc71d25\u0026v=4","repositories_count":24,"last_synced_at":"2023-02-28T03:35:30.246Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/smcclatchy","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T08:27:25.972Z","updated_at":"2023-02-28T03:35:30.267Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smcclatchy","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/smcclatchy/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"smcclatchy/spatial-transcriptomics","html_url":"https://github.com/smcclatchy/spatial-transcriptomics","last_synced_at":"2025-08-31T08:52:20.737Z","status":null,"issues_count":0,"pull_requests_count":7,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":627639.0,"issues_closed_count":0,"pull_requests_closed_count":4,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.5714285714285714,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":7,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":627639.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.5714285714285714,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":4,"created_at":"2025-08-29T12:33:13.349Z","updated_at":"2025-09-02T10:24:49.844Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smcclatchy%2Fspatial-transcriptomics/issues","issue_labels_count":{},"pull_request_labels_count":{"type: package cache":5,"type: template and tools":2},"issue_author_associations_count":{"COLLABORATOR":16,"OWNER":8},"pull_request_author_associations_count":{"OWNER":7,"NONE":1,"COLLABORATOR":1},"issue_authors":{"bswhite":9,"smcclatchy":8,"dmgatti":7},"pull_request_authors":{"smcclatchy":7,"Elaheh-Alizadeh":1,"milanmlft":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10087320,"issues_count":31306968,"pull_requests_count":96469683,"authors_count":10696025,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"type: package cache":5,"type: template and tools":2},"past_year_issue_author_associations_count":{"COLLABORATOR":8},"past_year_pull_request_author_associations_count":{"OWNER":7,"COLLABORATOR":1},"past_year_issue_authors":{"bswhite":8},"past_year_pull_request_authors":{"smcclatchy":7,"Elaheh-Alizadeh":1},"maintainers":[{"login":"smcclatchy","count":15,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smcclatchy"},{"login":"bswhite","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bswhite"},{"login":"dmgatti","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dmgatti"},{"login":"Elaheh-Alizadeh","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Elaheh-Alizadeh"}],"active_maintainers":[{"login":"bswhite","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bswhite"},{"login":"smcclatchy","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/smcclatchy"},{"login":"Elaheh-Alizadeh","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Elaheh-Alizadeh"}]},"events":{"total":{"IssuesEvent":1,"DeleteEvent":3,"IssueCommentEvent":6,"PushEvent":78,"PullRequestEvent":11,"ForkEvent":1,"CreateEvent":3},"last_year":{"IssuesEvent":1,"DeleteEvent":3,"IssueCommentEvent":6,"PushEvent":78,"PullRequestEvent":11,"ForkEvent":1,"CreateEvent":3}},"keywords":["10x-genomics","spatial-transcriptomics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/pr-close-signal.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:11.908Z","updated_at":"2023-09-26T01:31:11.908Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/pr-close-signal.yaml","dependencies":[{"id":13941005450,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-comment.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:11.915Z","updated_at":"2023-09-26T01:31:11.915Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/pr-comment.yaml","dependencies":[{"id":13941005451,"package_name":"carpentries/actions/download-workflow-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005454,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005455,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005456,"package_name":"carpentries/actions/comment-diff","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-post-remove-branch.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:13.361Z","updated_at":"2023-09-26T01:31:13.361Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/pr-post-remove-branch.yaml","dependencies":[{"id":13941005457,"package_name":"carpentries/actions/download-workflow-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005458,"package_name":"carpentries/actions/remove-branch","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-preflight.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:13.408Z","updated_at":"2023-09-26T01:31:13.408Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/pr-preflight.yaml","dependencies":[{"id":13941005459,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005460,"package_name":"carpentries/actions/comment-diff","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-receive.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:13.447Z","updated_at":"2023-09-26T01:31:13.447Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/pr-receive.yaml","dependencies":[{"id":13941005461,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005462,"package_name":"carpentries/actions/check-valid-pr","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005463,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005464,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13941005465,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13941005466,"package_name":"carpentries/actions/setup-sandpaper","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005472,"package_name":"carpentries/actions/setup-lesson-deps","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/sandpaper-main.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:15.206Z","updated_at":"2023-09-26T01:31:15.206Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/sandpaper-main.yaml","dependencies":[{"id":13941005473,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005474,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13941005475,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13941005476,"package_name":"carpentries/actions/setup-sandpaper","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005477,"package_name":"carpentries/actions/setup-lesson-deps","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update-cache.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:15.318Z","updated_at":"2023-09-26T01:31:15.318Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/update-cache.yaml","dependencies":[{"id":13941005478,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005479,"package_name":"carpentries/actions/check-valid-credentials","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005485,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13941005486,"package_name":"carpentries/actions/update-lockfile","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005487,"package_name":"carpentries/create-pull-request","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update-workflows.yaml","sha":null,"kind":"manifest","created_at":"2023-09-26T01:31:17.787Z","updated_at":"2023-09-26T01:31:17.787Z","repository_link":"https://github.com/smcclatchy/spatial-transcriptomics/blob/main/.github/workflows/update-workflows.yaml","dependencies":[{"id":13941005492,"package_name":"carpentries/actions/check-valid-credentials","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005493,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13941005494,"package_name":"carpentries/actions/update-workflows","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":13941005495,"package_name":"carpentries/create-pull-request","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:11.606Z","updated_at":"2025-10-07T08:15:31.616Z","avatar_url":"https://github.com/smcclatchy.png","language":"JavaScript","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/37778","html_url":"https://science.ecosyste.ms/projects/37778"}