{"id":38831,"name":"cellprofiler-plugins","description":"Community-contributed and experimental CellProfiler modules.","url":"https://github.com/cellprofiler/cellprofiler-plugins","last_synced_at":"2025-09-05T07:54:13.391Z","repository":{"id":37608329,"uuid":"8028846","full_name":"CellProfiler/CellProfiler-plugins","owner":"CellProfiler","description":"Community-contributed and experimental CellProfiler modules.","archived":false,"fork":false,"pushed_at":"2025-09-03T23:24:59.000Z","size":41410,"stargazers_count":68,"open_issues_count":28,"forks_count":70,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-09-04T01:11:02.067Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://plugins.cellprofiler.org/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CellProfiler.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2013-02-05T12:45:00.000Z","updated_at":"2025-08-20T17:47:32.000Z","dependencies_parsed_at":"2023-10-04T10:10:51.794Z","dependency_job_id":"47089c09-525f-4852-a3f1-ea8f940374e9","html_url":"https://github.com/CellProfiler/CellProfiler-plugins","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/CellProfiler/CellProfiler-plugins","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CellProfiler","download_url":"https://codeload.github.com/CellProfiler/CellProfiler-plugins/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273728152,"owners_count":25157136,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"CellProfiler","name":"CellProfiler","uuid":"710590","kind":"organization","description":"Software for quantitative analysis of biological images","email":null,"website":null,"location":"Cambridge, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/710590?v=4","repositories_count":30,"last_synced_at":"2024-04-16T02:50:43.183Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/CellProfiler","funding_links":[],"total_stars":1346,"followers":121,"following":0,"created_at":"2022-11-03T04:57:42.609Z","updated_at":"2024-04-16T02:50:47.417Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CellProfiler","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CellProfiler/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"CellProfiler/CellProfiler-plugins","html_url":"https://github.com/CellProfiler/CellProfiler-plugins","last_synced_at":"2025-08-31T08:50:30.475Z","status":null,"issues_count":11,"pull_requests_count":14,"avg_time_to_close_issue":43847549.14285714,"avg_time_to_close_pull_request":12443658.1,"issues_closed_count":7,"pull_requests_closed_count":10,"pull_request_authors_count":7,"issue_authors_count":8,"avg_comments_per_issue":1.3636363636363635,"avg_comments_per_pull_request":1.2857142857142858,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":11,"past_year_avg_time_to_close_issue":450837.0,"past_year_avg_time_to_close_pull_request":2060078.857142857,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":7,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.4,"past_year_avg_comments_per_pull_request":1.1818181818181819,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":6,"created_at":"2025-08-29T11:56:06.792Z","updated_at":"2025-09-03T03:27:42.351Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CellProfiler%2FCellProfiler-plugins/issues","issue_labels_count":{"enhancement":4},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":10,"MEMBER":7,"CONTRIBUTOR":5},"pull_request_author_associations_count":{"MEMBER":17,"NONE":10,"COLLABORATOR":5,"CONTRIBUTOR":1},"issue_authors":{"ErinWeisbart":6,"braymp":3,"MikeLippincott":2,"Pvannd":1,"ML33M":1,"viksyn2":1,"jenna-tomkinson":1,"emiglietta":1,"obruck":1,"bethac07":1,"Yesha012025":1,"sugan89":1,"kmshort":1,"J-M-Dundee":1},"pull_request_authors":{"ErinWeisbart":11,"bethac07":6,"gnodar01":4,"emiglietta":4,"wllgrnt":2,"GaiaGerbaka":1,"sugan89":1,"fefossa":1,"binliunls":1,"rsenft1":1,"ShataDg":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10094553,"issues_count":31373669,"pull_requests_count":97058592,"authors_count":10699554,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":3,"NONE":3,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"MEMBER":11,"COLLABORATOR":2,"NONE":1,"CONTRIBUTOR":1},"past_year_issue_authors":{"ErinWeisbart":2,"bethac07":1,"braymp":1,"MikeLippincott":1,"viksyn2":1,"Yesha012025":1},"past_year_pull_request_authors":{"ErinWeisbart":7,"bethac07":4,"emiglietta":2,"fefossa":1,"GaiaGerbaka":1},"maintainers":[{"login":"ErinWeisbart","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ErinWeisbart"},{"login":"bethac07","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"emiglietta","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/emiglietta"},{"login":"rsenft1","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/rsenft1"},{"login":"ShataDg","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ShataDg"}],"active_maintainers":[{"login":"ErinWeisbart","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ErinWeisbart"},{"login":"bethac07","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/bethac07"},{"login":"emiglietta","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/emiglietta"}]},"events":{"total":{"IssuesEvent":17,"WatchEvent":9,"DeleteEvent":9,"IssueCommentEvent":34,"PushEvent":39,"PullRequestReviewCommentEvent":5,"PullRequestReviewEvent":9,"PullRequestEvent":26,"ForkEvent":3,"CreateEvent":11},"last_year":{"IssuesEvent":17,"WatchEvent":9,"DeleteEvent":9,"IssueCommentEvent":34,"PushEvent":39,"PullRequestReviewCommentEvent":5,"PullRequestReviewEvent":9,"PullRequestEvent":26,"ForkEvent":3,"CreateEvent":11}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/deploy.yml","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:48.137Z","updated_at":"2023-10-04T10:10:48.137Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/.github/workflows/deploy.yml","dependencies":[{"id":14099454374,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14099454375,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14099454376,"package_name":"peaceiris/actions-gh-pages","ecosystem":"actions","requirements":"v3.6.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test.yml","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:49.238Z","updated_at":"2023-10-04T10:10:49.238Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/.github/workflows/test.yml","dependencies":[{"id":14099454721,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454722,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454723,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test_cellpose.yml","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:50.458Z","updated_at":"2023-10-04T10:10:50.458Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/.github/workflows/test_cellpose.yml","dependencies":[{"id":14099454744,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454745,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454746,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test_stardist.yml","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:51.156Z","updated_at":"2023-10-04T10:10:51.156Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/.github/workflows/test_stardist.yml","dependencies":[{"id":14099454753,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454754,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14099454755,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"dockerfiles/RunCellpose/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:51.262Z","updated_at":"2023-10-04T10:10:51.262Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/dockerfiles/RunCellpose/Dockerfile","dependencies":[{"id":14099454756,"package_name":"pytorch/pytorch","ecosystem":"docker","requirements":"1.13.0-cuda11.6-cudnn8-runtime","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-10-04T10:10:51.425Z","updated_at":"2023-10-04T10:10:51.425Z","repository_link":"https://github.com/CellProfiler/CellProfiler-plugins/blob/master/setup.py","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:12.908Z","updated_at":"2025-10-07T08:15:55.243Z","avatar_url":"https://github.com/CellProfiler.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/38831","html_url":"https://science.ecosyste.ms/projects/38831","bibtex_url":"https://science.ecosyste.ms/projects/38831/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/38831/export.apalike"}