{"id":39492,"name":"fetchngs","description":"Pipeline to fetch metadata and raw FastQ files from public databases","url":"https://github.com/nf-core/fetchngs","last_synced_at":"2025-09-05T08:12:33.694Z","repository":{"id":38037660,"uuid":"373451513","full_name":"nf-core/fetchngs","owner":"nf-core","description":"Pipeline to fetch metadata and raw FastQ files from public databases","archived":false,"fork":false,"pushed_at":"2025-07-22T14:20:31.000Z","size":4634,"stargazers_count":177,"open_issues_count":43,"forks_count":81,"subscribers_count":116,"default_branch":"master","last_synced_at":"2025-07-22T14:22:47.306Z","etag":null,"topics":["ddbj","download","ena","fastq","geo","nextflow","nf-core","pipeline","sra","synapse","workflow"],"latest_commit_sha":null,"homepage":"https://nf-co.re/fetchngs","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-06-03T09:26:41.000Z","updated_at":"2025-06-22T06:00:41.000Z","dependencies_parsed_at":"2023-12-20T10:54:18.904Z","dependency_job_id":"6f6c6fed-1e99-4eeb-b4ea-fd91b1e8b745","html_url":"https://github.com/nf-core/fetchngs","commit_stats":{"total_commits":599,"total_committers":28,"mean_commits":"21.392857142857142","dds":0.66110183639399,"last_synced_commit":"04ee5031a4941b5fc52c158847cf797b45977965"},"previous_names":[],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/fetchngs","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/fetchngs/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273728182,"owners_count":25157145,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":[],"commits":{"id":1317673,"full_name":"nf-core/fetchngs","default_branch":"master","committers":[{"name":"Harshil Patel","email":"drpatelhh@gmail.com","login":null,"count":203},{"name":"maxulysse","email":"max.u.garcia@gmail.com","login":null,"count":122},{"name":"Sateesh Peri","email":"perisateesh@gmail.com","login":null,"count":48},{"name":"Adam Talbot","email":"12817534+adamrtalbot","login":"adamrtalbot","count":38},{"name":"Moritz E. Beber","email":"midnighter@posteo.net","login":null,"count":38},{"name":"Maxime U Garcia","email":"maxime.garcia@seqera.io","login":null,"count":27},{"name":"ejseqera","email":"esha.joshi@seqera.io","login":null,"count":23},{"name":"Harshil Patel","email":"drpatelh","login":"drpatelh","count":22},{"name":"Daisy Wenyan Han","email":"60151111+daisyhan97","login":"daisyhan97","count":20},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":15},{"name":"Jonathan Manning","email":"jonathan.manning@healx.io","login":null,"count":9},{"name":"James Fellows Yates","email":"jfy133@gmail.com","login":null,"count":5},{"name":"Sateesh_Peri","email":"33637490+sateeshperi","login":"sateeshperi","count":4},{"name":"Esha Joshi","email":"eshajoshi@eshas-mbp.home","login":null,"count":3},{"name":"Rob Syme","email":"rob.syme@gmail.com","login":null,"count":3},{"name":"Edmund Miller","email":"edmund.a.miller@protonmail.com","login":null,"count":3},{"name":"Esha Joshi","email":"128735622+ejseqera","login":"ejseqera","count":3},{"name":"davidecarlson","email":"david.carlson@stonybrook.edu","login":null,"count":2},{"name":"maxibor","email":"maxime.borry@gmail.com","login":null,"count":2},{"name":"jahdoos","email":"rfor10@gmail.com","login":null,"count":1},{"name":"kevinmenden","email":"kevin.menden@t-online.de","login":null,"count":1},{"name":"MCMandR","email":"136441313+MCMandR","login":"MCMandR","count":1},{"name":"Oliver Ziff","email":"41295194+ojziff","login":"ojziff","count":1},{"name":"Phil Ewels","email":"phil.ewels@scilifelab.se","login":null,"count":1},{"name":"Adam Talbot","email":"adam.talbot@seqera.io","login":null,"count":1},{"name":"Alain Domissy","email":"alaindomissy@gmail.com","login":null,"count":1},{"name":"sirclockalot","email":"l.c.stickley@gmail.com","login":null,"count":1},{"name":"EC2 Default User","email":"ec2-user@ip-172-31-58-117.ec2.internal","login":null,"count":1}],"total_commits":599,"total_committers":28,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":21.392857142857142,"dds":0.66110183639399,"past_year_committers":[{"name":"maxulysse","email":"max.u.garcia@gmail.com","login":null,"count":122},{"name":"Harshil Patel","email":"drpatelhh@gmail.com","login":null,"count":69},{"name":"Sateesh Peri","email":"perisateesh@gmail.com","login":null,"count":48},{"name":"Adam Talbot","email":"12817534+adamrtalbot","login":"adamrtalbot","count":38},{"name":"Maxime U Garcia","email":"maxime.garcia@seqera.io","login":null,"count":27},{"name":"ejseqera","email":"esha.joshi@seqera.io","login":null,"count":23},{"name":"Jonathan Manning","email":"jonathan.manning@healx.io","login":null,"count":9},{"name":"Harshil Patel","email":"drpatelh","login":"drpatelh","count":8},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":5},{"name":"Sateesh_Peri","email":"33637490+sateeshperi","login":"sateeshperi","count":4},{"name":"Rob Syme","email":"rob.syme@gmail.com","login":null,"count":3},{"name":"Esha Joshi","email":"eshajoshi@eshas-mbp.home","login":null,"count":3},{"name":"Edmund Miller","email":"edmund.a.miller@protonmail.com","login":null,"count":3},{"name":"Esha Joshi","email":"128735622+ejseqera","login":"ejseqera","count":3},{"name":"davidecarlson","email":"david.carlson@stonybrook.edu","login":null,"count":2},{"name":"Adam Talbot","email":"adam.talbot@seqera.io","login":null,"count":1},{"name":"EC2 Default User","email":"ec2-user@ip-172-31-58-117.ec2.internal","login":null,"count":1},{"name":"MCMandR","email":"136441313+MCMandR","login":"MCMandR","count":1},{"name":"sirclockalot","email":"l.c.stickley@gmail.com","login":null,"count":1}],"past_year_total_commits":371,"past_year_total_committers":19,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":19.526315789473685,"past_year_dds":0.6711590296495957,"last_synced_at":"2023-11-04T18:34:46.217Z","last_synced_commit":"04ee5031a4941b5fc52c158847cf797b45977965","created_at":"2023-06-15T18:11:36.495Z","updated_at":"2023-11-04T18:34:46.217Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:08.406Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"nf-core/fetchngs","html_url":"https://github.com/nf-core/fetchngs","last_synced_at":"2025-08-31T09:41:58.309Z","status":null,"issues_count":61,"pull_requests_count":127,"avg_time_to_close_issue":11535836.783783784,"avg_time_to_close_pull_request":1025440.5913043479,"issues_closed_count":37,"pull_requests_closed_count":115,"pull_request_authors_count":25,"issue_authors_count":44,"avg_comments_per_issue":2.5901639344262297,"avg_comments_per_pull_request":1.700787401574803,"merged_pull_requests_count":97,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":15,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":2661179.3333333335,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":6,"past_year_pull_request_authors_count":9,"past_year_issue_authors_count":7,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.5333333333333333,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2023-06-15T18:12:09.238Z","updated_at":"2025-09-03T04:58:16.672Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffetchngs/issues","issue_labels_count":{"bug":43,"enhancement":29,"documentation":1},"pull_request_labels_count":{"enhancement":4,"bug":2},"issue_author_associations_count":{"NONE":55,"MEMBER":12,"CONTRIBUTOR":8},"pull_request_author_associations_count":{"MEMBER":115,"CONTRIBUTOR":43,"NONE":38},"issue_authors":{"drpatelh":7,"dmalzl":5,"pinin4fjords":3,"ojziff":3,"suhrig":2,"lindenb":2,"maxulysse":2,"millerh1":2,"jfy133":2,"telatin":2,"el239":2,"Midnighter":2,"alexblaessle":2,"awalsh17":1,"tanaes":1,"bhodkins":1,"adf-ncgr":1,"adomingues":1,"kaitlinchaung":1,"ollieeknight":1,"atongsa":1,"FriederikeHanssen":1,"Kiliankleemann":1,"royfrancis":1,"edmundmiller":1,"QuangOngCM":1,"SCDealy":1,"VangelisTheodorakis":1,"mniederhuber":1,"pmoris":1,"wzheng0520":1,"tiendu":1,"Zhenghongc":1,"SchwarzMarek":1,"sateeshperi":1,"adamrtalbot":1,"archieandrews10":1,"sirclockalot":1,"JiaGengChang":1,"jhgraber":1,"BeckmannA":1,"nvnieuwk":1,"camlloyd":1,"DollyCM":1,"amizeranschi":1,"Luke-ebbis":1,"bmlab-sg":1,"artur-matysik":1,"kvn95ss":1,"huldash":1,"kanekalla":1,"dalinlee":1},"pull_request_authors":{"drpatelh":43,"maxulysse":40,"adamrtalbot":28,"nf-core-bot":28,"sateeshperi":9,"bentsherman":8,"ejseqera":4,"robsyme":3,"suhrig":3,"edmundmiller":3,"pinin4fjords":2,"Midnighter":2,"vsmalladi":2,"maxibor":2,"Emiller88":1,"abhi18av":1,"davidecarlson":1,"FelixKrueger":1,"camlloyd":1,"pvanheus":1,"drernie":1,"kafkasl":1,"norapluto":1,"ajandria":1,"tanaes":1,"ukleiner":1,"edg1983":1,"nicolae06":1,"jenmuell":1,"abartlett004":1,"jfy133":1,"alexblaessle":1,"sirclockalot":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10058116,"issues_count":30985287,"pull_requests_count":93679802,"authors_count":10684821,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":6,"enhancement":3},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":8,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"NONE":12,"MEMBER":11,"CONTRIBUTOR":1},"past_year_issue_authors":{"camlloyd":1,"DollyCM":1,"edmundmiller":1,"huldash":1,"kanekalla":1,"lindenb":1,"Luke-ebbis":1,"tanaes":1,"Zhenghongc":1},"past_year_pull_request_authors":{"nf-core-bot":9,"bentsherman":3,"vsmalladi":2,"abartlett004":1,"camlloyd":1,"maxulysse":1,"tanaes":1,"jenmuell":1,"ukleiner":1,"drernie":1,"edmundmiller":1,"maxibor":1,"norapluto":1},"maintainers":[{"login":"drpatelh","count":50,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/drpatelh"},{"login":"maxulysse","count":42,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"},{"login":"nf-core-bot","count":28,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"jfy133","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jfy133"},{"login":"maxibor","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxibor"},{"login":"pinin4fjords","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pinin4fjords"},{"login":"abhi18av","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/abhi18av"}],"active_maintainers":[{"login":"nf-core-bot","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"maxibor","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxibor"},{"login":"maxulysse","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"}]},"events":{"total":{"IssuesEvent":10,"WatchEvent":28,"DeleteEvent":8,"IssueCommentEvent":49,"PushEvent":46,"PullRequestReviewEvent":41,"PullRequestReviewCommentEvent":35,"PullRequestEvent":29,"ForkEvent":13,"CreateEvent":12},"last_year":{"IssuesEvent":10,"WatchEvent":28,"DeleteEvent":8,"IssueCommentEvent":49,"PushEvent":46,"PullRequestReviewEvent":41,"PullRequestReviewCommentEvent":35,"PullRequestEvent":29,"ForkEvent":13,"CreateEvent":12}},"keywords":["ddbj","download","ena","fastq","geo","nextflow","nf-core","pipeline","sra","synapse","workflow"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-02-02T18:00:57.051Z","updated_at":"2023-02-02T18:00:57.051Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/branch.yml","dependencies":[{"id":7318714032,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-02-02T18:00:57.061Z","updated_at":"2023-02-02T18:00:57.061Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/ci.yml","dependencies":[{"id":7318714033,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7318714034,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7318714035,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-02T18:00:57.071Z","updated_at":"2023-02-02T18:00:57.071Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":7318714036,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7318714037,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-02T18:00:57.091Z","updated_at":"2023-02-02T18:00:57.091Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/linting.yml","dependencies":[{"id":7318714038,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7318714039,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7318714040,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":7318714041,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7318714042,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7318714043,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":7318714044,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-02-02T18:00:57.112Z","updated_at":"2023-02-02T18:00:57.112Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":7318714045,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7318714046,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:12:57.706Z","updated_at":"2023-09-22T14:12:57.706Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":13875599744,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/cloud_tests_full.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:12:58.757Z","updated_at":"2023-09-22T14:12:58.757Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/cloud_tests_full.yml","dependencies":[{"id":13875599935,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13875599936,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/cloud_tests_small.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:12:59.763Z","updated_at":"2023-09-22T14:12:59.763Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/cloud_tests_small.yml","dependencies":[{"id":13875599972,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13875599973,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/sratoolsncbisettings/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:13:00.773Z","updated_at":"2023-09-22T14:13:00.773Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/modules/nf-core/custom/sratoolsncbisettings/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/sratools/fasterqdump/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:13:00.867Z","updated_at":"2023-09-22T14:13:00.867Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/modules/nf-core/sratools/fasterqdump/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/sratools/prefetch/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:13:01.036Z","updated_at":"2023-09-22T14:13:01.036Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/modules/nf-core/sratools/prefetch/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:13:01.205Z","updated_at":"2023-09-22T14:13:01.205Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-22T14:13:01.325Z","updated_at":"2023-09-22T14:13:01.325Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/pyproject.toml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2023-12-20T10:54:14.962Z","updated_at":"2023-12-20T10:54:14.962Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/.github/workflows/release-announcments.yml","dependencies":[{"id":15188068176,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":15188068177,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":15188068178,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-20T10:54:15.258Z","updated_at":"2023-12-20T10:54:15.258Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/nextflowpipelineutils/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-20T10:54:15.275Z","updated_at":"2023-12-20T10:54:15.275Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/subworkflows/nf-core/nextflowpipelineutils/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/nfcore_pipeline_utils/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-20T10:54:15.281Z","updated_at":"2023-12-20T10:54:15.281Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/subworkflows/nf-core/nfcore_pipeline_utils/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/nfvalidation_plugin_utils/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-20T10:54:15.580Z","updated_at":"2023-12-20T10:54:15.580Z","repository_link":"https://github.com/nf-core/fetchngs/blob/master/subworkflows/nf-core/nfvalidation_plugin_utils/meta.yml","dependencies":[]}],"score":8.725832056527565,"created_at":"2025-09-04T15:51:13.788Z","updated_at":"2025-10-07T08:16:11.708Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.5070524","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["workflows","pipelines","nf-test","dsl2","metagenomics","taxonomic-classifications","taxonomic-profiling","atac-seq","chromatin-accessibiity","illumina"],"project_url":"https://science.ecosyste.ms/api/v1/projects/39492","html_url":"https://science.ecosyste.ms/projects/39492","bibtex_url":"https://science.ecosyste.ms/projects/39492/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/39492/export.apalike"}