{"id":40272,"name":"pacvar","description":"Longread PacBio sequencing processing for WGS and PureTarget","url":"https://github.com/nf-core/pacvar","last_synced_at":"2025-09-05T08:32:02.594Z","repository":{"id":259091974,"uuid":"858980820","full_name":"nf-core/pacvar","owner":"nf-core","description":"Longread PacBio sequencing processing for WGS and PureTarget","archived":false,"fork":false,"pushed_at":"2025-04-30T12:27:15.000Z","size":362218,"stargazers_count":10,"open_issues_count":8,"forks_count":6,"subscribers_count":197,"default_branch":"master","last_synced_at":"2025-05-24T00:50:43.005Z","etag":null,"topics":["alignment","long-read","pacbio","puretarget","variant-calling","wgs"],"latest_commit_sha":null,"homepage":"https://nf-co.re/pacvar","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-09-17T21:39:08.000Z","updated_at":"2025-04-04T04:27:42.000Z","dependencies_parsed_at":"2025-03-21T20:34:29.275Z","dependency_job_id":null,"html_url":"https://github.com/nf-core/pacvar","commit_stats":null,"previous_names":["tanyasarkjain/pacvar","nf-core/pacvar"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/pacvar","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/pacvar/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273731387,"owners_count":25157858,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":null,"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"nf-core/pacvar","html_url":"https://github.com/nf-core/pacvar","last_synced_at":"2025-08-31T13:33:25.980Z","status":null,"issues_count":5,"pull_requests_count":17,"avg_time_to_close_issue":83029.0,"avg_time_to_close_pull_request":1777576.5384615385,"issues_closed_count":2,"pull_requests_closed_count":13,"pull_request_authors_count":5,"issue_authors_count":4,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":1.0588235294117647,"merged_pull_requests_count":10,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":17,"past_year_avg_time_to_close_issue":83029.0,"past_year_avg_time_to_close_pull_request":1777576.5384615385,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":13,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":1.0588235294117647,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":10,"created_at":"2025-08-29T21:17:36.017Z","updated_at":"2025-09-03T04:58:16.678Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Fpacvar/issues","issue_labels_count":{"bug":4},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":5},"pull_request_author_associations_count":{"COLLABORATOR":12,"MEMBER":7,"NONE":4,"CONTRIBUTOR":1},"issue_authors":{"jos4uke":2,"quynhbui1907":1,"matthdsm":1,"mvheetve":1},"pull_request_authors":{"tanyasarkjain":12,"nf-core-bot":7,"matthdsm":1,"sateeshperi":1,"edmundmiller":1,"jos4uke":1,"nvnieuwk":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10082304,"issues_count":31220387,"pull_requests_count":96069062,"authors_count":10694175,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":4},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":5},"past_year_pull_request_author_associations_count":{"COLLABORATOR":12,"MEMBER":7,"NONE":4,"CONTRIBUTOR":1},"past_year_issue_authors":{"jos4uke":2,"matthdsm":1,"mvheetve":1,"quynhbui1907":1},"past_year_pull_request_authors":{"tanyasarkjain":12,"nf-core-bot":7,"sateeshperi":1,"jos4uke":1,"nvnieuwk":1,"matthdsm":1,"edmundmiller":1},"maintainers":[{"login":"tanyasarkjain","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tanyasarkjain"},{"login":"nf-core-bot","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"}],"active_maintainers":[{"login":"tanyasarkjain","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tanyasarkjain"},{"login":"nf-core-bot","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"}]},"events":{"total":{"CreateEvent":12,"ReleaseEvent":1,"IssuesEvent":10,"WatchEvent":14,"DeleteEvent":3,"MemberEvent":1,"IssueCommentEvent":39,"PushEvent":191,"PullRequestReviewEvent":73,"PullRequestReviewCommentEvent":133,"PullRequestEvent":39,"ForkEvent":6},"last_year":{"CreateEvent":12,"ReleaseEvent":1,"IssuesEvent":10,"WatchEvent":14,"DeleteEvent":3,"MemberEvent":1,"IssueCommentEvent":39,"PushEvent":191,"PullRequestReviewEvent":73,"PullRequestReviewCommentEvent":133,"PullRequestEvent":39,"ForkEvent":6}},"keywords":["alignment","long-read","pacbio","puretarget","variant-calling","wgs"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:22.095Z","updated_at":"2024-10-22T11:53:22.095Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":20346700978,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20346700979,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:25.637Z","updated_at":"2024-10-22T11:53:25.637Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":20346700991,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20346700992,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:26.047Z","updated_at":"2024-10-22T11:53:26.047Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/branch.yml","dependencies":[{"id":20346701001,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:26.325Z","updated_at":"2024-10-22T11:53:26.325Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/ci.yml","dependencies":[{"id":20346701009,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20346701010,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20346701011,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:26.972Z","updated_at":"2024-10-22T11:53:26.972Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":20346701039,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:27.802Z","updated_at":"2024-10-22T11:53:27.802Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/download_pipeline.yml","dependencies":[{"id":20346701042,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20346701043,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":20346701044,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20346701045,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:28.263Z","updated_at":"2024-10-22T11:53:28.263Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":20346701050,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20346701051,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":20346701052,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:28.531Z","updated_at":"2024-10-22T11:53:28.531Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/linting.yml","dependencies":[{"id":20346701494,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20346701495,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20346701496,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20346701497,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:29.134Z","updated_at":"2024-10-22T11:53:29.134Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":20346701723,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":20346701724,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:31.165Z","updated_at":"2024-10-22T11:53:31.165Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/release-announcements.yml","dependencies":[{"id":20346702356,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":20346702357,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20346702358,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:32.562Z","updated_at":"2024-10-22T11:53:32.562Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:32.927Z","updated_at":"2024-10-22T11:53:32.927Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:33.173Z","updated_at":"2024-10-22T11:53:33.173Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-10-22T11:53:33.397Z","updated_at":"2024-10-22T11:53:33.397Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:37:47.206Z","updated_at":"2025-02-04T19:37:47.206Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/.github/workflows/template_version_comment.yml","dependencies":[{"id":21741534357,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":21741534358,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":21741534877,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.089Z","updated_at":"2025-02-04T19:38:01.089Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/bcftools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.133Z","updated_at":"2025-02-04T19:38:01.133Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/bcftools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepvariant/callvariants/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.177Z","updated_at":"2025-02-04T19:38:01.177Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/deepvariant/callvariants/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepvariant/makeexamples/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.222Z","updated_at":"2025-02-04T19:38:01.222Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/deepvariant/makeexamples/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepvariant/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.268Z","updated_at":"2025-02-04T19:38:01.268Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/deepvariant/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepvariant/postprocessvariants/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.313Z","updated_at":"2025-02-04T19:38:01.313Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/deepvariant/postprocessvariants/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepvariant/rundeepvariant/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.360Z","updated_at":"2025-02-04T19:38:01.360Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/deepvariant/rundeepvariant/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/haplotypecaller/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.419Z","updated_at":"2025-02-04T19:38:01.419Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/gatk4/haplotypecaller/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.464Z","updated_at":"2025-02-04T19:38:01.464Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/gunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hiphase/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.509Z","updated_at":"2025-02-04T19:38:01.509Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/hiphase/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/lima/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.562Z","updated_at":"2025-02-04T19:38:01.562Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/lima/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pbmm2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.617Z","updated_at":"2025-02-04T19:38:01.617Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbmm2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pbsv/call/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.662Z","updated_at":"2025-02-04T19:38:01.662Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbsv/call/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pbsv/discover/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.709Z","updated_at":"2025-02-04T19:38:01.709Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbsv/discover/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.755Z","updated_at":"2025-02-04T19:38:01.755Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.830Z","updated_at":"2025-02-04T19:38:01.830Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/samtools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgzip/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.876Z","updated_at":"2025-02-04T19:38:01.876Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/tabix/bgzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/trgt/genotype/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.924Z","updated_at":"2025-02-04T19:38:01.924Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/trgt/genotype/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/trgt/plot/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:01.971Z","updated_at":"2025-02-04T19:38:01.971Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/trgt/plot/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-02-04T19:38:02.043Z","updated_at":"2025-02-04T19:38:02.043Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/index/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:25.668Z","updated_at":"2025-03-21T20:34:25.668Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/bcftools/index/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/sort/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:25.716Z","updated_at":"2025-03-21T20:34:25.716Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/bcftools/sort/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:25.764Z","updated_at":"2025-03-21T20:34:25.764Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/haplotypecaller/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:25.812Z","updated_at":"2025-03-21T20:34:25.812Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/gatk4/haplotypecaller/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gunzip/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.077Z","updated_at":"2025-03-21T20:34:26.077Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/gunzip/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/hiphase/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.125Z","updated_at":"2025-03-21T20:34:26.125Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/hiphase/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/lima/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.172Z","updated_at":"2025-03-21T20:34:26.172Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/lima/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.220Z","updated_at":"2025-03-21T20:34:26.220Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/multiqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/pbmm2/align/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.268Z","updated_at":"2025-03-21T20:34:26.268Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbmm2/align/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/pbsv/call/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:26.529Z","updated_at":"2025-03-21T20:34:26.529Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbsv/call/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/pbsv/discover/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.005Z","updated_at":"2025-03-21T20:34:27.005Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/pbsv/discover/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/index/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.269Z","updated_at":"2025-03-21T20:34:27.269Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/samtools/index/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/sort/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.317Z","updated_at":"2025-03-21T20:34:27.317Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/samtools/sort/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/tabix/bgzip/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.364Z","updated_at":"2025-03-21T20:34:27.364Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/tabix/bgzip/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/trgt/genotype/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.412Z","updated_at":"2025-03-21T20:34:27.412Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/trgt/genotype/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/trgt/plot/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-21T20:34:27.460Z","updated_at":"2025-03-21T20:34:27.460Z","repository_link":"https://github.com/nf-core/pacvar/blob/master/modules/nf-core/trgt/plot/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:14.756Z","updated_at":"2025-10-07T08:16:29.061Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.14813048","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/40272","html_url":"https://science.ecosyste.ms/projects/40272","bibtex_url":"https://science.ecosyste.ms/projects/40272/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/40272/export.apalike"}