{"id":40623,"name":"2022-12-08-shotgun-metagenomics-workshop","description":"Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.  ","url":"https://github.com/scienceparkstudygroup/2022-12-08-shotgun-metagenomics-workshop","last_synced_at":"2025-09-05T08:40:43.944Z","repository":{"id":44523638,"uuid":"512670968","full_name":"ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop","owner":"ScienceParkStudyGroup","description":"Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.  ","archived":false,"fork":false,"pushed_at":"2023-03-16T16:30:15.000Z","size":2242,"stargazers_count":1,"open_issues_count":0,"forks_count":3,"subscribers_count":5,"default_branch":"gh-pages","last_synced_at":"2025-05-24T05:15:39.146Z","etag":null,"topics":["bioinformatics","microbiome","shotgun-metagenomics"],"latest_commit_sha":null,"homepage":"https://ScienceParkStudyGroup.github.io/2022-12-08-shotgun-metagenomics-workshop","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ScienceParkStudyGroup.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null}},"created_at":"2022-07-11T08:15:06.000Z","updated_at":"2023-11-16T02:40:30.000Z","dependencies_parsed_at":"2023-01-24T19:18:51.161Z","dependency_job_id":null,"html_url":"https://github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":"carpentries/workshop-template","purl":"pkg:github/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScienceParkStudyGroup%2F2022-12-08-shotgun-metagenomics-workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScienceParkStudyGroup%2F2022-12-08-shotgun-metagenomics-workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScienceParkStudyGroup%2F2022-12-08-shotgun-metagenomics-workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScienceParkStudyGroup%2F2022-12-08-shotgun-metagenomics-workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScienceParkStudyGroup","download_url":"https://codeload.github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop/tar.gz/refs/heads/gh-pages","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ScienceParkStudyGroup%2F2022-12-08-shotgun-metagenomics-workshop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273733349,"owners_count":25158259,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ScienceParkStudyGroup","name":"Amsterdam Science Park Study Group","uuid":"27761479","kind":"organization","description":"This Study Group is a regular meetup place for Science Park researchers to improve their code and data skills, learn new tools, and work openly together.","email":"m.galland@uva.nl","website":"https://www.scienceparkstudygroup.info/","location":"Amsterdam Science Park","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/27761479?v=4","repositories_count":7,"last_synced_at":"2023-02-28T01:41:20.656Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ScienceParkStudyGroup","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-28T01:41:20.658Z","updated_at":"2023-02-28T01:41:20.658Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScienceParkStudyGroup","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ScienceParkStudyGroup/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"scienceparkstudygroup/2022-12-08-shotgun-metagenomics-workshop","html_url":"https://github.com/scienceparkstudygroup/2022-12-08-shotgun-metagenomics-workshop","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T08:40:24.774Z","updated_at":"2025-09-05T08:40:24.774Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/scienceparkstudygroup%2F2022-12-08-shotgun-metagenomics-workshop","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/scienceparkstudygroup%2F2022-12-08-shotgun-metagenomics-workshop/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10094415,"issues_count":31369099,"pull_requests_count":97039083,"authors_count":10700197,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bioinformatics","microbiome","shotgun-metagenomics"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-23T16:31:13.428Z","updated_at":"2022-08-23T16:31:13.428Z","repository_link":"https://github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop/blob/gh-pages/requirements.txt","dependencies":[{"id":2415592040,"package_name":"PyYAML","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2415592041,"package_name":"beautifulsoup4","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":2415592042,"package_name":"git_root","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"rubygems","filepath":"Gemfile","sha":null,"kind":"manifest","created_at":"2022-08-23T16:31:13.548Z","updated_at":"2022-08-23T16:31:13.548Z","repository_link":"https://github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop/blob/gh-pages/Gemfile","dependencies":[{"id":2415592908,"package_name":"github-pages","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"development","optional":false},{"id":2415592909,"package_name":"webrick","ecosystem":"rubygems","requirements":"\u003e= 1.6.1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template.yml","sha":null,"kind":"manifest","created_at":"2023-01-24T19:18:51.086Z","updated_at":"2023-01-24T19:18:51.086Z","repository_link":"https://github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop/blob/gh-pages/.github/workflows/template.yml","dependencies":[{"id":7142569792,"package_name":"ruby/setup-ruby","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7142569794,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7142569795,"package_name":"actions/checkout","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7142569796,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7142569797,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/website.yml","sha":null,"kind":"manifest","created_at":"2023-01-24T19:18:51.112Z","updated_at":"2023-01-24T19:18:51.112Z","repository_link":"https://github.com/ScienceParkStudyGroup/2022-12-08-shotgun-metagenomics-workshop/blob/gh-pages/.github/workflows/website.yml","dependencies":[{"id":7142569812,"package_name":"ruby/setup-ruby","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7142569813,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7142569814,"package_name":"actions/checkout","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7142569815,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":7142569816,"package_name":"actions/cache","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:15.129Z","updated_at":"2025-10-07T08:16:36.231Z","avatar_url":"https://github.com/ScienceParkStudyGroup.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/40623","html_url":"https://science.ecosyste.ms/projects/40623","bibtex_url":"https://science.ecosyste.ms/projects/40623/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/40623/export.apalike"}