{"id":4150,"name":"rl-hifivariantcaller","description":null,"url":"https://github.com/rlinder02/rl-hifivariantcaller","last_synced_at":"2025-09-04T17:16:42.842Z","repository":{"id":257668975,"uuid":"858446094","full_name":"rlinder02/rl-hifivariantcaller","owner":"rlinder02","description":null,"archived":false,"fork":false,"pushed_at":"2025-08-25T23:31:10.000Z","size":12779,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-25T23:35:10.971Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rlinder02.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-09-16T22:55:05.000Z","updated_at":"2025-06-29T02:58:24.000Z","dependencies_parsed_at":"2024-09-18T02:32:40.443Z","dependency_job_id":"45de91c6-6535-422e-9601-c0e4fa6033ef","html_url":"https://github.com/rlinder02/rl-hifivariantcaller","commit_stats":null,"previous_names":["rlinder02/rl-hifivariantcaller"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/rlinder02/rl-hifivariantcaller","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rlinder02","download_url":"https://codeload.github.com/rlinder02/rl-hifivariantcaller/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273641944,"owners_count":25142266,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rlinder02","name":"Robert Linder","uuid":"37880379","kind":"user","description":"","email":"","website":"https://www.linkedin.com/in/robert-linder-02/","location":"San Diego, CA","twitter":null,"company":"Pacific Biosciences","icon_url":"https://avatars.githubusercontent.com/u/37880379?u=7873caee1bde5694e48eaa268082cbf30f6dc6aa\u0026v=4","repositories_count":1,"last_synced_at":"2023-07-26T23:53:33.313Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/rlinder02","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-26T23:53:33.336Z","updated_at":"2023-07-26T23:53:33.336Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rlinder02","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rlinder02/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"rlinder02/rl-hifivariantcaller","html_url":"https://github.com/rlinder02/rl-hifivariantcaller","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-04T17:16:16.121Z","updated_at":"2025-09-04T17:16:16.121Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rlinder02%2Frl-hifivariantcaller/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10079947,"issues_count":31294689,"pull_requests_count":96077738,"authors_count":10693120,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"ReleaseEvent":1,"PushEvent":87},"last_year":{"ReleaseEvent":1,"PushEvent":87}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:31.026Z","updated_at":"2024-09-18T02:32:31.026Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/branch.yml","dependencies":[{"id":20197915713,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:31.691Z","updated_at":"2024-09-18T02:32:31.691Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/ci.yml","dependencies":[{"id":20197916218,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20197916219,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20197916361,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:32.043Z","updated_at":"2024-09-18T02:32:32.043Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":20197917535,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:32.570Z","updated_at":"2024-09-18T02:32:32.570Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":20197917692,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20197917693,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":20197917694,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20197917695,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:33.129Z","updated_at":"2024-09-18T02:32:33.129Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":20197917807,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20197917808,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":20197917809,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:33.687Z","updated_at":"2024-09-18T02:32:33.687Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/linting.yml","dependencies":[{"id":20197917810,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":20197917811,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20197917812,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20197917813,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:35.081Z","updated_at":"2024-09-18T02:32:35.081Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":20197917834,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":20197917835,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:35.541Z","updated_at":"2024-09-18T02:32:35.541Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/.github/workflows/release-announcements.yml","dependencies":[{"id":20197917848,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":20197917849,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":20197917850,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:37.208Z","updated_at":"2024-09-18T02:32:37.208Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:37.584Z","updated_at":"2024-09-18T02:32:37.584Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:38.076Z","updated_at":"2024-09-18T02:32:38.076Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:38.441Z","updated_at":"2024-09-18T02:32:38.441Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:39.144Z","updated_at":"2024-09-18T02:32:39.144Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:39.468Z","updated_at":"2024-09-18T02:32:39.468Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-09-18T02:32:39.646Z","updated_at":"2024-09-18T02:32:39.646Z","repository_link":"https://github.com/rlinder02/rl-hifivariantcaller/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:50:10.458Z","updated_at":"2025-10-07T08:04:58.074Z","avatar_url":"https://github.com/rlinder02.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/4150","html_url":"https://science.ecosyste.ms/projects/4150","bibtex_url":"https://science.ecosyste.ms/projects/4150/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/4150/export.apalike"}