{"id":41701,"name":"renee","description":"A comprehensive quality-control and quantification RNA-seq pipeline","url":"https://github.com/ccbr/renee","last_synced_at":"2025-09-05T09:08:35.769Z","repository":{"id":112061816,"uuid":"447297455","full_name":"CCBR/RENEE","owner":"CCBR","description":"A comprehensive quality-control and quantification RNA-seq pipeline","archived":false,"fork":false,"pushed_at":"2025-07-10T20:03:05.000Z","size":23009,"stargazers_count":6,"open_issues_count":18,"forks_count":3,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-07-11T05:08:11.617Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://CCBR.github.io/RENEE/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"skchronicles/RNA-seek","license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/CCBR.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-01-12T16:49:27.000Z","updated_at":"2025-07-10T20:02:29.000Z","dependencies_parsed_at":null,"dependency_job_id":"ad37a61e-4e85-420e-a02c-b44870f4f692","html_url":"https://github.com/CCBR/RENEE","commit_stats":null,"previous_names":["ccbr/renee"],"tags_count":31,"template":false,"template_full_name":null,"purl":"pkg:github/CCBR/RENEE","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CCBR","download_url":"https://codeload.github.com/CCBR/RENEE/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273734592,"owners_count":25158280,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"CCBR","name":"CCR Collaborative Bioinformatics Resource","uuid":"10426639","kind":"organization","description":"CCR Collaborative Bioinformatics Resource, Center for Cancer Research (NCI), National Institutes of Health","email":"nciccbr@mail.nih.gov","website":"https://bioinformatics.ccr.cancer.gov/ccbr/","location":"United States of America","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/10426639?v=4","repositories_count":92,"last_synced_at":"2024-04-19T04:44:18.139Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/CCBR","funding_links":[],"total_stars":85,"followers":30,"following":0,"created_at":"2022-11-12T07:35:16.356Z","updated_at":"2024-04-19T04:44:52.738Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CCBR","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/CCBR/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"CCBR/RENEE","html_url":"https://github.com/CCBR/RENEE","last_synced_at":"2025-08-31T18:48:05.531Z","status":null,"issues_count":20,"pull_requests_count":23,"avg_time_to_close_issue":3043324.111111111,"avg_time_to_close_pull_request":203912.9411764706,"issues_closed_count":9,"pull_requests_closed_count":17,"pull_request_authors_count":3,"issue_authors_count":3,"avg_comments_per_issue":0.5,"avg_comments_per_pull_request":0.043478260869565216,"merged_pull_requests_count":15,"bot_issues_count":0,"bot_pull_requests_count":6,"past_year_issues_count":19,"past_year_pull_requests_count":23,"past_year_avg_time_to_close_issue":42113.25,"past_year_avg_time_to_close_pull_request":203912.9411764706,"past_year_issues_closed_count":8,"past_year_pull_requests_closed_count":17,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.5263157894736842,"past_year_avg_comments_per_pull_request":0.043478260869565216,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":6,"past_year_merged_pull_requests_count":15,"created_at":"2025-08-29T12:13:45.733Z","updated_at":"2025-09-03T04:45:17.074Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/CCBR%2FRENEE/issues","issue_labels_count":{"RENEE":46,"bug":23,"enhancement":9,"ccbrpipeliner/7":6,"documentation":5,"high priority":3,"good first issue":1,"low priority":1},"pull_request_labels_count":{"RENEE":56,"bug":4,"ccbrpipeliner/7":3,"enhancement":2,"documentation":1},"issue_author_associations_count":{"MEMBER":59,"COLLABORATOR":9,"CONTRIBUTOR":5,"NONE":2},"pull_request_author_associations_count":{"MEMBER":69,"CONTRIBUTOR":13,"NONE":3,"COLLABORATOR":3},"issue_authors":{"kelly-sovacool":46,"kopardev":12,"slsevilla":12,"samarth8392":2,"pajailwala":1,"nmkuehn":1,"TBrownmiller":1},"pull_request_authors":{"kelly-sovacool":66,"github-actions[bot]":12,"kopardev":3,"slsevilla":3,"samarth8392":2,"Ramlah7":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095926,"issues_count":31397479,"pull_requests_count":97150418,"authors_count":10700329,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"RENEE":12,"bug":6,"documentation":2,"high priority":2,"enhancement":1},"past_year_pull_request_labels_count":{"RENEE":20,"bug":3},"past_year_issue_author_associations_count":{"MEMBER":25,"CONTRIBUTOR":2,"NONE":1},"past_year_pull_request_author_associations_count":{"MEMBER":29,"CONTRIBUTOR":10,"NONE":2},"past_year_issue_authors":{"kelly-sovacool":21,"kopardev":3,"samarth8392":2,"nmkuehn":1,"pajailwala":1},"past_year_pull_request_authors":{"kelly-sovacool":29,"github-actions[bot]":10,"Ramlah7":2},"maintainers":[{"login":"kelly-sovacool","count":112,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kelly-sovacool"},{"login":"kopardev","count":15,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kopardev"},{"login":"slsevilla","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/slsevilla"},{"login":"pajailwala","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pajailwala"}],"active_maintainers":[{"login":"kelly-sovacool","count":50,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kelly-sovacool"},{"login":"kopardev","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kopardev"},{"login":"pajailwala","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/pajailwala"}]},"events":{"total":{"CreateEvent":53,"ReleaseEvent":7,"IssuesEvent":60,"WatchEvent":4,"DeleteEvent":44,"IssueCommentEvent":68,"PushEvent":105,"PullRequestReviewEvent":4,"PullRequestEvent":72,"ForkEvent":2},"last_year":{"CreateEvent":53,"ReleaseEvent":7,"IssuesEvent":60,"WatchEvent":4,"DeleteEvent":44,"IssueCommentEvent":68,"PushEvent":105,"PullRequestReviewEvent":4,"PullRequestEvent":72,"ForkEvent":2}},"keywords":[],"dependencies":null,"score":null,"created_at":"2025-09-04T15:51:16.513Z","updated_at":"2025-10-07T08:16:59.293Z","avatar_url":"https://github.com/CCBR.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/41701","html_url":"https://science.ecosyste.ms/projects/41701","bibtex_url":"https://science.ecosyste.ms/projects/41701/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/41701/export.apalike"}