{"id":41757,"name":"variantinterpretation","description":"Collaborative Interpretation-Pipeline workflow based on nf-core pipeline structure","url":"https://github.com/cio-abcd/variantinterpretation","last_synced_at":"2025-09-05T09:09:52.047Z","repository":{"id":148091817,"uuid":"608126589","full_name":"cio-abcd/variantinterpretation","owner":"cio-abcd","description":"Collaborative Interpretation-Pipeline workflow based on nf-core pipeline structure","archived":false,"fork":false,"pushed_at":"2025-08-27T12:00:28.000Z","size":2697,"stargazers_count":8,"open_issues_count":18,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-27T21:10:01.645Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cio-abcd.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-03-01T11:28:06.000Z","updated_at":"2025-05-22T11:03:48.000Z","dependencies_parsed_at":"2023-05-19T05:15:44.027Z","dependency_job_id":"c1401868-1388-4ab1-bf9b-a942a1fc73f8","html_url":"https://github.com/cio-abcd/variantinterpretation","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/cio-abcd/variantinterpretation","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cio-abcd","download_url":"https://codeload.github.com/cio-abcd/variantinterpretation/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273734635,"owners_count":25158291,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cio-abcd","name":"CIO-ABCD","uuid":"122288584","kind":"organization","description":"Center for Integrated Oncology Aachen-Bonn-Cologne-Düsseldorf","email":null,"website":null,"location":"Germany","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/122288584?v=4","repositories_count":1,"last_synced_at":"2023-03-27T13:28:48.832Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cio-abcd","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-03-27T13:28:48.835Z","updated_at":"2023-03-27T13:28:48.835Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cio-abcd","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cio-abcd/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"cio-abcd/variantinterpretation","html_url":"https://github.com/cio-abcd/variantinterpretation","last_synced_at":"2025-09-01T16:11:09.784Z","status":null,"issues_count":6,"pull_requests_count":4,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":3713762.75,"issues_closed_count":0,"pull_requests_closed_count":4,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.25,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":4,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":3713762.75,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.25,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2025-08-30T18:10:07.568Z","updated_at":"2025-09-03T00:54:13.093Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cio-abcd%2Fvariantinterpretation/issues","issue_labels_count":{"enhancement":6,"bug":4},"pull_request_labels_count":{"enhancement":4,"bug":2},"issue_author_associations_count":{"CONTRIBUTOR":9,"NONE":1},"pull_request_author_associations_count":{"CONTRIBUTOR":12},"issue_authors":{"sci-kai":7,"biolancer":2,"visuu90":1},"pull_request_authors":{"sci-kai":6,"feiloo":3,"biolancer":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095926,"issues_count":31397479,"pull_requests_count":97150418,"authors_count":10700329,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":1},"past_year_pull_request_labels_count":{"bug":1,"enhancement":1},"past_year_issue_author_associations_count":{"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":6},"past_year_issue_authors":{"biolancer":1},"past_year_pull_request_authors":{"feiloo":3,"biolancer":2,"sci-kai":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":3,"WatchEvent":2,"DeleteEvent":4,"IssueCommentEvent":9,"PushEvent":39,"PullRequestEvent":11,"PullRequestReviewCommentEvent":14,"PullRequestReviewEvent":27,"ForkEvent":1,"CreateEvent":4},"last_year":{"IssuesEvent":3,"WatchEvent":2,"DeleteEvent":4,"IssueCommentEvent":9,"PushEvent":39,"PullRequestEvent":11,"PullRequestReviewCommentEvent":14,"PullRequestReviewEvent":27,"ForkEvent":1,"CreateEvent":4}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T05:15:43.774Z","updated_at":"2023-05-19T05:15:43.774Z","repository_link":"https://github.com/cio-abcd/variantinterpretation/blob/main/.github/workflows/branch.yml","dependencies":[{"id":9787763322,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T05:15:43.831Z","updated_at":"2023-05-19T05:15:43.831Z","repository_link":"https://github.com/cio-abcd/variantinterpretation/blob/main/.github/workflows/ci.yml","dependencies":[{"id":9787763759,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":9787763760,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T05:15:43.860Z","updated_at":"2023-05-19T05:15:43.860Z","repository_link":"https://github.com/cio-abcd/variantinterpretation/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":9787763767,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":9787763768,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T05:15:43.911Z","updated_at":"2023-05-19T05:15:43.911Z","repository_link":"https://github.com/cio-abcd/variantinterpretation/blob/main/.github/workflows/linting.yml","dependencies":[{"id":9787763779,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":9787763780,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":9787763781,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":9787763782,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":9787763783,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":9787763784,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":9787763785,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-05-19T05:15:43.944Z","updated_at":"2023-05-19T05:15:43.944Z","repository_link":"https://github.com/cio-abcd/variantinterpretation/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":9787764120,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":9787764121,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:16.575Z","updated_at":"2025-10-07T08:17:00.440Z","avatar_url":"https://github.com/cio-abcd.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.10036356","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/41757","html_url":"https://science.ecosyste.ms/projects/41757","bibtex_url":"https://science.ecosyste.ms/projects/41757/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/41757/export.apalike"}