{"id":42026,"name":"testpipeline","description":"A small example pipeline used to test new nf-core infrastructure and common code.","url":"https://github.com/nf-core/testpipeline","last_synced_at":"2025-09-05T09:15:11.861Z","repository":{"id":40294801,"uuid":"311643133","full_name":"nf-core/testpipeline","owner":"nf-core","description":"A small example pipeline used to test new nf-core infrastructure and common code.","archived":false,"fork":false,"pushed_at":"2025-07-08T07:24:08.000Z","size":3401,"stargazers_count":5,"open_issues_count":12,"forks_count":42,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-07-08T08:30:53.151Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-11-10T11:53:20.000Z","updated_at":"2025-05-26T09:12:36.000Z","dependencies_parsed_at":"2023-12-19T16:18:48.350Z","dependency_job_id":"f6a5c428-8f10-47c4-acad-fbd7158c2a1e","html_url":"https://github.com/nf-core/testpipeline","commit_stats":{"total_commits":109,"total_committers":10,"mean_commits":10.9,"dds":0.6788990825688073,"last_synced_commit":"28e764e2819b58bed488faca4862944bb4787bce"},"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/testpipeline","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/testpipeline/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273735257,"owners_count":25158425,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":[],"commits":{"id":1317681,"full_name":"nf-core/testpipeline","default_branch":"master","committers":[{"name":"ggabernet","email":"gisela.gabernet@qbic.uni-tuebingen.de","login":null,"count":35},{"name":"Rike","email":"friederike.hanssen@qbic.uni-tuebingen.de","login":null,"count":34},{"name":"mirpedrol","email":"mirp.julia@gmail.com","login":null,"count":14},{"name":"Matthias Hörtenhuber","email":"mashehu3@gmail.com","login":null,"count":8},{"name":"Matthias Hörtenhuber","email":"mashehu","login":"mashehu","count":5},{"name":"Phil Ewels","email":"phil.ewels@scilifelab.se","login":null,"count":5},{"name":"Rob Syme","email":"rob.syme@gmail.com","login":null,"count":4},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":2},{"name":"nicolasDelhomme","email":"nicolas.delhomme@umu.se","login":null,"count":1},{"name":"Phil Ewels","email":"phil@seqera.io","login":null,"count":1}],"total_commits":109,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":10.9,"dds":0.6788990825688073,"past_year_committers":[{"name":"mirpedrol","email":"mirp.julia@gmail.com","login":null,"count":14},{"name":"Matthias Hörtenhuber","email":"mashehu3@gmail.com","login":null,"count":8},{"name":"Matthias Hörtenhuber","email":"mashehu","login":"mashehu","count":5},{"name":"ggabernet","email":"gisela.gabernet@qbic.uni-tuebingen.de","login":null,"count":5},{"name":"Rob Syme","email":"rob.syme@gmail.com","login":null,"count":4},{"name":"nicolasDelhomme","email":"nicolas.delhomme@umu.se","login":null,"count":1},{"name":"Phil Ewels","email":"phil@seqera.io","login":null,"count":1},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":1}],"past_year_total_commits":39,"past_year_total_committers":8,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":4.875,"past_year_dds":0.641025641025641,"last_synced_at":"2023-11-04T18:34:06.612Z","last_synced_commit":"28e764e2819b58bed488faca4862944bb4787bce","created_at":"2023-06-15T18:11:52.768Z","updated_at":"2023-11-04T18:34:06.612Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"nf-core/testpipeline","html_url":"https://github.com/nf-core/testpipeline","last_synced_at":"2025-08-31T13:58:30.618Z","status":null,"issues_count":2,"pull_requests_count":87,"avg_time_to_close_issue":9500730.5,"avg_time_to_close_pull_request":761264.506329114,"issues_closed_count":2,"pull_requests_closed_count":79,"pull_request_authors_count":13,"issue_authors_count":2,"avg_comments_per_issue":0.5,"avg_comments_per_pull_request":1.1379310344827587,"merged_pull_requests_count":34,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":19,"past_year_avg_time_to_close_issue":795.0,"past_year_avg_time_to_close_pull_request":117076.5,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":14,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.42105263157894735,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":4,"created_at":"2023-06-15T18:12:27.234Z","updated_at":"2025-09-03T03:07:24.591Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ftestpipeline/issues","issue_labels_count":{"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":1,"NONE":1},"pull_request_author_associations_count":{"MEMBER":78,"CONTRIBUTOR":21,"NONE":5,"COLLABORATOR":3},"issue_authors":{"tgbrooks":1,"mirpedrol":1},"pull_request_authors":{"nf-core-bot":38,"mirpedrol":30,"ewels":11,"ggabernet":7,"KevinMenden":5,"gq1":4,"mashehu":3,"robsyme":3,"FriederikeHanssen":2,"jfy133":1,"nvnieuwk":1,"maxulysse":1,"apeltzer":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095926,"issues_count":31397479,"pull_requests_count":97150418,"authors_count":10700329,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"MEMBER":17,"NONE":4,"CONTRIBUTOR":3},"past_year_issue_authors":{},"past_year_pull_request_authors":{"nf-core-bot":12,"mirpedrol":5,"gq1":4,"mashehu":3},"maintainers":[{"login":"nf-core-bot","count":38,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"mirpedrol","count":20,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mirpedrol"},{"login":"ewels","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ewels"},{"login":"ggabernet","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ggabernet"},{"login":"robsyme","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/robsyme"},{"login":"jfy133","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jfy133"},{"login":"maxulysse","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maxulysse"},{"login":"apeltzer","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/apeltzer"}],"active_maintainers":[{"login":"nf-core-bot","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"mirpedrol","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mirpedrol"}]},"events":{"total":{"WatchEvent":1,"DeleteEvent":29,"IssueCommentEvent":14,"PushEvent":51,"PullRequestReviewCommentEvent":4,"PullRequestReviewEvent":9,"PullRequestEvent":50,"ForkEvent":3,"CreateEvent":18},"last_year":{"WatchEvent":1,"DeleteEvent":29,"IssueCommentEvent":14,"PushEvent":51,"PullRequestReviewCommentEvent":4,"PullRequestReviewEvent":9,"PullRequestEvent":50,"ForkEvent":3,"CreateEvent":18}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/download.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.518Z","updated_at":"2023-02-09T12:01:42.518Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/download.yml","dependencies":[{"id":7489334929,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7489334930,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7489334931,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.208Z","updated_at":"2023-02-09T12:01:42.208Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":7489330107,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.328Z","updated_at":"2023-02-09T12:01:42.328Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":7489333538,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.389Z","updated_at":"2023-02-09T12:01:42.389Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/branch.yml","dependencies":[{"id":7489334819,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.472Z","updated_at":"2023-02-09T12:01:42.472Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/ci.yml","dependencies":[{"id":7489334846,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7489334847,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.647Z","updated_at":"2023-02-09T12:01:42.647Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":7489335923,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7489335928,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.757Z","updated_at":"2023-02-09T12:01:42.757Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/linting.yml","dependencies":[{"id":7489338557,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7489338558,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7489338559,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":7489338560,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7489338561,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7489338562,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7489338563,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-02-09T12:01:42.903Z","updated_at":"2023-02-09T12:01:42.903Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":7489338686,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7489338689,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.329Z","updated_at":"2023-09-23T11:14:20.329Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":13897785615,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/cloud_tests_full.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.335Z","updated_at":"2023-09-23T11:14:20.335Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/cloud_tests_full.yml","dependencies":[{"id":13897785616,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13897785617,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.347Z","updated_at":"2023-09-23T11:14:20.347Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/.github/workflows/release-announcments.yml","dependencies":[{"id":13897785618,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":13897785619,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.450Z","updated_at":"2023-09-23T11:14:20.450Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.461Z","updated_at":"2023-09-23T11:14:20.461Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.471Z","updated_at":"2023-09-23T11:14:20.471Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:20.475Z","updated_at":"2023-09-23T11:14:20.475Z","repository_link":"https://github.com/nf-core/testpipeline/blob/main/pyproject.toml","dependencies":[]}],"score":5.135798437050262,"created_at":"2025-09-04T15:51:16.863Z","updated_at":"2025-10-07T08:17:07.045Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["nextflow","nf-core","workflows","pipelines","bioinformatics","atac-seq","chromatin-accessibiity","nf-test","dsl2","long-read-sequencing"],"project_url":"https://science.ecosyste.ms/api/v1/projects/42026","html_url":"https://science.ecosyste.ms/projects/42026","bibtex_url":"https://science.ecosyste.ms/projects/42026/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/42026/export.apalike"}