{"id":42096,"name":"enrichmap","description":"EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.","url":"https://github.com/secrierlab/enrichmap","last_synced_at":"2025-09-05T09:18:18.861Z","repository":{"id":295839155,"uuid":"986326450","full_name":"secrierlab/EnrichMap","owner":"secrierlab","description":"EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.","archived":false,"fork":false,"pushed_at":"2025-06-11T15:44:48.000Z","size":93336,"stargazers_count":6,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-14T04:53:12.714Z","etag":null,"topics":["geneset-enrichment","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://enrichmap.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/secrierlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-05-19T12:49:41.000Z","updated_at":"2025-07-14T01:55:38.000Z","dependencies_parsed_at":"2025-06-09T04:31:16.551Z","dependency_job_id":null,"html_url":"https://github.com/secrierlab/EnrichMap","commit_stats":null,"previous_names":["secrierlab/enrichmap"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/secrierlab/EnrichMap","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/secrierlab","download_url":"https://codeload.github.com/secrierlab/EnrichMap/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273735416,"owners_count":25158443,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"secrierlab","name":"Secrier Lab @ UCL Genetics Institute","uuid":"43300934","kind":"organization","description":"","email":null,"website":"https://secrierlab.github.io/","location":"University College London, UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/43300934?v=4","repositories_count":1,"last_synced_at":"2023-02-26T19:36:18.390Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/secrierlab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-26T19:36:18.394Z","updated_at":"2023-02-26T19:36:18.394Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/secrierlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/secrierlab/repositories"},"packages":[{"id":11697441,"name":"enrichmap","ecosystem":"pypi","description":"EnrichMap: Spatially informed enrichment analysis for functional interpretation of spatial transcriptomics","homepage":"https://github.com/secrierlab/enrichmap","licenses":"GPL-3.0-only","normalized_licenses":["GPL-3.0-only"],"repository_url":"https://github.com/secrierlab/enrichmap","keywords_array":[],"namespace":null,"versions_count":6,"first_release_published_at":"2025-05-27T21:24:43.000Z","latest_release_published_at":"2025-06-11T15:45:08.000Z","latest_release_number":"0.1.9","last_synced_at":"2025-08-15T08:04:01.044Z","created_at":"2025-05-27T21:46:23.025Z","updated_at":"2025-08-15T08:04:01.373Z","registry_url":"https://pypi.org/project/enrichmap/","install_command":"pip install enrichmap --index-url https://pypi.org/simple","documentation_url":"https://enrichmap.readthedocs.io/en/stable","metadata":{"funding":null,"documentation":"https://enrichmap.readthedocs.io/en/stable","classifiers":["License :: OSI Approved :: GNU General Public License v3 (GPLv3)","Operating System :: OS Independent","Programming Language :: Python :: 3"],"normalized_name":"enrichmap"},"repo_metadata":{"id":295839155,"uuid":"986326450","full_name":"secrierlab/EnrichMap","owner":"secrierlab","description":"EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.","archived":false,"fork":false,"pushed_at":"2025-06-11T15:44:48.000Z","size":93336,"stargazers_count":4,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-06-11T17:10:55.740Z","etag":null,"topics":["geneset-enrichment","spatial-transcriptomics"],"latest_commit_sha":null,"homepage":"https://enrichmap.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/secrierlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-05-19T12:49:41.000Z","updated_at":"2025-06-11T15:44:51.000Z","dependencies_parsed_at":"2025-06-09T04:31:16.551Z","dependency_job_id":null,"html_url":"https://github.com/secrierlab/EnrichMap","commit_stats":null,"previous_names":["secrierlab/enrichmap"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/secrierlab/EnrichMap","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/secrierlab","download_url":"https://codeload.github.com/secrierlab/EnrichMap/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":265238438,"owners_count":23732631,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"tags":[]},"repo_metadata_updated_at":"2025-07-14T04:07:13.771Z","dependent_packages_count":0,"downloads":104,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":51.14934826563492,"dependent_packages_count":9.077944344821457,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":30.113646305228187},"purl":"pkg:pypi/enrichmap","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/enrichmap","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/enrichmap","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/enrichmap/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/enrichmap/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/enrichmap/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/enrichmap/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/enrichmap/related_packages","maintainers":[{"uuid":"cenkcelik","login":"cenkcelik","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/cenkcelik/","role":"Owner","created_at":"2025-05-27T21:48:37.087Z","updated_at":"2025-05-27T21:48:37.087Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/cenkcelik/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":725067,"maintainers_count":308348,"namespaces_count":0,"keywords_count":238006,"github":"pypi","metadata":{"funded_packages_count":50519},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-05T05:40:58.860Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"secrierlab/EnrichMap","html_url":"https://github.com/secrierlab/EnrichMap","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-29T18:42:41.647Z","updated_at":"2025-08-29T18:42:41.647Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/secrierlab%2FEnrichMap/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"seasonzhao":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095926,"issues_count":31397479,"pull_requests_count":97150418,"authors_count":10700329,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"seasonzhao":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":4,"IssueCommentEvent":1,"PushEvent":48},"last_year":{"IssuesEvent":1,"WatchEvent":4,"IssueCommentEvent":1,"PushEvent":48}},"keywords":["geneset-enrichment","spatial-transcriptomics"],"dependencies":[{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2025-06-09T04:31:13.213Z","updated_at":"2025-06-09T04:31:13.213Z","repository_link":"https://github.com/secrierlab/EnrichMap/blob/main/docs/requirements.txt","dependencies":[{"id":23525586185,"package_name":"sphinx","ecosystem":"pypi","requirements":"==7.1.2","direct":true,"kind":"runtime","optional":false},{"id":23525586191,"package_name":"sphinx-book-theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525587312,"package_name":"ipykernel","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525587313,"package_name":"myst-nb","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-06-09T04:31:14.114Z","updated_at":"2025-06-09T04:31:14.114Z","repository_link":"https://github.com/secrierlab/EnrichMap/blob/main/pyproject.toml","dependencies":[{"id":23525587510,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525587511,"package_name":"scanpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588519,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588520,"package_name":"seaborn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588521,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588522,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588523,"package_name":"dask","ecosystem":"pypi","requirements":"==2024.11.2","direct":true,"kind":"runtime","optional":false},{"id":23525588524,"package_name":"statannotations","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525588821,"package_name":"squidpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525589980,"package_name":"pygam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525590019,"package_name":"scikit-gstat","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525590076,"package_name":"adjustText","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":23525590077,"package_name":"splot","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:16.938Z","updated_at":"2025-10-07T08:17:08.992Z","avatar_url":"https://github.com/secrierlab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":104,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/42096","html_url":"https://science.ecosyste.ms/projects/42096","bibtex_url":"https://science.ecosyste.ms/projects/42096/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/42096/export.apalike"}