{"id":42399,"name":"screpertoire","description":"A toolkit for single-cell immune profiling","url":"https://github.com/borchlab/screpertoire","last_synced_at":"2025-09-05T09:23:37.712Z","repository":{"id":37494053,"uuid":"234732643","full_name":"BorchLab/scRepertoire","owner":"BorchLab","description":"A toolkit for single-cell immune profiling","archived":false,"fork":false,"pushed_at":"2025-07-29T13:28:49.000Z","size":132647,"stargazers_count":342,"open_issues_count":2,"forks_count":62,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-07-29T15:27:14.599Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://www.borch.dev/uploads/screpertoire/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BorchLab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-01-18T12:38:32.000Z","updated_at":"2025-07-28T14:32:31.000Z","dependencies_parsed_at":"2024-01-22T13:29:57.754Z","dependency_job_id":"8a97d020-fa92-4507-b7aa-acc9532d3efe","html_url":"https://github.com/BorchLab/scRepertoire","commit_stats":null,"previous_names":["borchlab/screpertoire","ncborcherding/screpertoire"],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/BorchLab/scRepertoire","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorchLab","download_url":"https://codeload.github.com/BorchLab/scRepertoire/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273736013,"owners_count":25158564,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BorchLab","name":"BorchLab","uuid":"195553435","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/195553435?v=4","repositories_count":1,"last_synced_at":"2025-01-21T20:19:41.748Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BorchLab","funding_links":[],"total_stars":0,"followers":2,"following":0,"created_at":"2025-01-21T20:19:41.782Z","updated_at":"2025-01-21T20:19:41.782Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorchLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorchLab/repositories"},"packages":[{"id":11676757,"name":"github.com/BorchLab/scRepertoire","ecosystem":"go","description":null,"homepage":null,"licenses":"other","normalized_licenses":["GPL-1.0+"],"repository_url":"https://github.com/BorchLab/scRepertoire","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2024-02-24T16:39:39.000Z","latest_release_published_at":"2025-07-17T17:41:16.000Z","latest_release_number":"v2.5.0+incompatible","last_synced_at":"2025-09-04T13:05:20.847Z","created_at":"2025-05-23T10:07:14.566Z","updated_at":"2025-09-04T13:05:20.848Z","registry_url":"https://pkg.go.dev/github.com/BorchLab/scRepertoire","install_command":"go get github.com/BorchLab/scRepertoire","documentation_url":"https://pkg.go.dev/github.com/BorchLab/scRepertoire#section-documentation","metadata":{},"repo_metadata":{"id":37494053,"uuid":"234732643","full_name":"BorchLab/scRepertoire","owner":"BorchLab","description":"A toolkit for single-cell immune profiling","archived":false,"fork":false,"pushed_at":"2025-05-20T22:09:08.000Z","size":132169,"stargazers_count":333,"open_issues_count":6,"forks_count":58,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-05-20T23:25:09.374Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://www.borch.dev/uploads/screpertoire/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BorchLab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-01-18T12:38:32.000Z","updated_at":"2025-05-15T05:57:41.000Z","dependencies_parsed_at":"2024-01-22T13:29:57.754Z","dependency_job_id":"8a97d020-fa92-4507-b7aa-acc9532d3efe","html_url":"https://github.com/BorchLab/scRepertoire","commit_stats":null,"previous_names":["borchlab/screpertoire","ncborcherding/screpertoire"],"tags_count":6,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorchLab","download_url":"https://codeload.github.com/BorchLab/scRepertoire/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":255884124,"owners_count":22303208,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2025-07-29T16:13:15.793Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.825186304275193,"dependent_packages_count":5.4589533387888975,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.642069821532045},"purl":"pkg:golang/github.com/%21borch%21lab/sc%21repertoire","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/BorchLab/scRepertoire","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/BorchLab/scRepertoire","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/BorchLab/scRepertoire/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FBorchLab%2FscRepertoire/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FBorchLab%2FscRepertoire/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FBorchLab%2FscRepertoire/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2FBorchLab%2FscRepertoire/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1952121,"maintainers_count":0,"namespaces_count":741275,"keywords_count":109185,"github":"golang","metadata":{"funded_packages_count":49011},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-05T05:14:06.439Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}},{"id":11676760,"name":"github.com/borchlab/screpertoire","ecosystem":"go","description":null,"homepage":null,"licenses":"other","normalized_licenses":["GPL-1.0+"],"repository_url":"https://github.com/borchlab/screpertoire","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2024-02-24T16:39:39.000Z","latest_release_published_at":"2025-07-17T17:41:16.000Z","latest_release_number":"v2.5.0+incompatible","last_synced_at":"2025-08-30T00:07:40.585Z","created_at":"2025-05-23T10:07:14.949Z","updated_at":"2025-08-30T00:07:40.586Z","registry_url":"https://pkg.go.dev/github.com/borchlab/screpertoire","install_command":"go get github.com/borchlab/screpertoire","documentation_url":"https://pkg.go.dev/github.com/borchlab/screpertoire#section-documentation","metadata":{},"repo_metadata":{"id":37494053,"uuid":"234732643","full_name":"BorchLab/scRepertoire","owner":"BorchLab","description":"A toolkit for single-cell immune profiling","archived":false,"fork":false,"pushed_at":"2025-05-20T22:09:08.000Z","size":132169,"stargazers_count":333,"open_issues_count":6,"forks_count":58,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-05-20T23:25:09.374Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://www.borch.dev/uploads/screpertoire/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BorchLab.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-01-18T12:38:32.000Z","updated_at":"2025-05-15T05:57:41.000Z","dependencies_parsed_at":"2024-01-22T13:29:57.754Z","dependency_job_id":"8a97d020-fa92-4507-b7aa-acc9532d3efe","html_url":"https://github.com/BorchLab/scRepertoire","commit_stats":null,"previous_names":["borchlab/screpertoire","ncborcherding/screpertoire"],"tags_count":6,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BorchLab","download_url":"https://codeload.github.com/BorchLab/scRepertoire/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":255884124,"owners_count":22303208,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2025-07-29T16:13:15.960Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":5.825186304275193,"dependent_packages_count":5.4589533387888975,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":5.642069821532045},"purl":"pkg:golang/github.com/borchlab/screpertoire","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/borchlab/screpertoire","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/borchlab/screpertoire","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/borchlab/screpertoire/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fborchlab%2Fscrepertoire/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fborchlab%2Fscrepertoire/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fborchlab%2Fscrepertoire/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fborchlab%2Fscrepertoire/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1952121,"maintainers_count":0,"namespaces_count":741275,"keywords_count":109185,"github":"golang","metadata":{"funded_packages_count":49011},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-05T05:14:06.439Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"BorchLab/scRepertoire","html_url":"https://github.com/BorchLab/scRepertoire","last_synced_at":"2025-08-31T14:17:15.950Z","status":null,"issues_count":33,"pull_requests_count":18,"avg_time_to_close_issue":186976.6923076923,"avg_time_to_close_pull_request":557365.5,"issues_closed_count":26,"pull_requests_closed_count":14,"pull_request_authors_count":5,"issue_authors_count":26,"avg_comments_per_issue":1.6363636363636365,"avg_comments_per_pull_request":0.4444444444444444,"merged_pull_requests_count":13,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":33,"past_year_pull_requests_count":18,"past_year_avg_time_to_close_issue":186976.6923076923,"past_year_avg_time_to_close_pull_request":557365.5,"past_year_issues_closed_count":26,"past_year_pull_requests_closed_count":14,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":26,"past_year_avg_comments_per_issue":1.6363636363636365,"past_year_avg_comments_per_pull_request":0.4444444444444444,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":13,"created_at":"2025-07-16T12:20:41.882Z","updated_at":"2025-08-31T14:17:15.951Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BorchLab%2FscRepertoire/issues","issue_labels_count":{"enhancement":4,"more info needed":4,"bug":2},"pull_request_labels_count":{"bug":1},"issue_author_associations_count":{"NONE":25,"MEMBER":6,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"MEMBER":12,"NONE":3,"COLLABORATOR":2,"CONTRIBUTOR":1},"issue_authors":{"ncborcherding":6,"monikaramos":2,"pwmellors":2,"pm-Genome2021":1,"airabiotenor":1,"SuleimanovShakir":1,"LynnChan99":1,"zktuong":1,"kriegerm":1,"tumorscholar":1,"Chiranjit1504":1,"Xiangyi-Deng":1,"thepope0":1,"liezeltamon":1,"Junedays":1,"lynndustin":1,"sejjer7":1,"bapoorva":1,"pwwang":1,"ifamoxic":1,"ankushs0128":1,"guoyuh":1,"denvercal1234GitHub":1,"Eduard278":1,"jreimertz":1,"mihem":1},"pull_request_authors":{"ncborcherding":12,"mihem":2,"Qile0317":2,"jreimertz":1,"zjsyj":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9931175,"issues_count":29361641,"pull_requests_count":84674195,"authors_count":9177003,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":4,"more info needed":4,"bug":2},"past_year_pull_request_labels_count":{"bug":1},"past_year_issue_author_associations_count":{"NONE":25,"MEMBER":6,"CONTRIBUTOR":2},"past_year_pull_request_author_associations_count":{"MEMBER":12,"NONE":3,"COLLABORATOR":2,"CONTRIBUTOR":1},"past_year_issue_authors":{"ncborcherding":6,"pwmellors":2,"monikaramos":2,"zktuong":1,"Xiangyi-Deng":1,"tumorscholar":1,"thepope0":1,"SuleimanovShakir":1,"sejjer7":1,"pwwang":1,"pm-Genome2021":1,"mihem":1,"lynndustin":1,"LynnChan99":1,"liezeltamon":1,"kriegerm":1,"Junedays":1,"jreimertz":1,"ifamoxic":1,"guoyuh":1,"Eduard278":1,"denvercal1234GitHub":1,"Chiranjit1504":1,"bapoorva":1,"ankushs0128":1,"airabiotenor":1},"past_year_pull_request_authors":{"ncborcherding":12,"Qile0317":2,"mihem":2,"jreimertz":1,"zjsyj":1},"maintainers":[{"login":"ncborcherding","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ncborcherding"},{"login":"Qile0317","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Qile0317"}],"active_maintainers":[{"login":"ncborcherding","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ncborcherding"},{"login":"Qile0317","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Qile0317"}]},"events":{"total":{"CreateEvent":22,"ReleaseEvent":2,"IssuesEvent":55,"WatchEvent":22,"DeleteEvent":7,"IssueCommentEvent":90,"PushEvent":90,"PullRequestEvent":30,"ForkEvent":4},"last_year":{"CreateEvent":22,"ReleaseEvent":2,"IssuesEvent":55,"WatchEvent":22,"DeleteEvent":7,"IssueCommentEvent":90,"PushEvent":90,"PullRequestEvent":30,"ForkEvent":4}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-02-18T09:15:40.427Z","updated_at":"2023-02-18T09:15:40.427Z","repository_link":"https://github.com/BorchLab/scRepertoire/blob/master/DESCRIPTION","dependencies":[{"id":7758472090,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":7758472121,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":7758472383,"package_name":"stringdist","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472428,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472615,"package_name":"reshape2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472622,"package_name":"ggalluvial","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472638,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472650,"package_name":"vegan","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472651,"package_name":"powerTCR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472660,"package_name":"SingleCellExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472664,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472674,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472685,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472698,"package_name":"doParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472704,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472721,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472735,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472742,"package_name":"igraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472757,"package_name":"ggraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472770,"package_name":"tidygraph","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472780,"package_name":"SeuratObject","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":7758472795,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472806,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472819,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472834,"package_name":"circlize","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472836,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472853,"package_name":"Seurat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":7758472856,"package_name":"scater","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-12-13T19:19:33.657Z","updated_at":"2023-12-13T19:19:33.657Z","repository_link":"https://github.com/BorchLab/scRepertoire/blob/master/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":15073622935,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15073622936,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622937,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622938,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yaml","sha":null,"kind":"manifest","created_at":"2023-12-13T19:19:33.774Z","updated_at":"2023-12-13T19:19:33.774Z","repository_link":"https://github.com/BorchLab/scRepertoire/blob/master/.github/workflows/pkgdown.yaml","dependencies":[{"id":15073622941,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15073622942,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622943,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622944,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622945,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"v4.4.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pr-commands.yaml","sha":null,"kind":"manifest","created_at":"2023-12-13T19:19:34.297Z","updated_at":"2023-12-13T19:19:34.297Z","repository_link":"https://github.com/BorchLab/scRepertoire/blob/master/.github/workflows/pr-commands.yaml","dependencies":[{"id":15073622948,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15073622949,"package_name":"r-lib/actions/pr-fetch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622950,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622951,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622952,"package_name":"r-lib/actions/pr-push","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-12-13T19:19:34.550Z","updated_at":"2023-12-13T19:19:34.550Z","repository_link":"https://github.com/BorchLab/scRepertoire/blob/master/.github/workflows/test-coverage.yaml","dependencies":[{"id":15073622957,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":15073622958,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622959,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":15073622960,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:17.263Z","updated_at":"2025-10-07T08:17:15.434Z","avatar_url":"https://github.com/BorchLab.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pcbi.1012760","https://doi.org/10.12688/f1000research.22139.2"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/42399","html_url":"https://science.ecosyste.ms/projects/42399","bibtex_url":"https://science.ecosyste.ms/projects/42399/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/42399/export.apalike"}