{"id":42684,"name":"flexlmm","description":"Flexible linear mixed model framework for Genome Wide Association Studies ","url":"https://github.com/birneylab/flexlmm","last_synced_at":"2025-09-08T11:53:33.727Z","repository":{"id":238884173,"uuid":"687090350","full_name":"birneylab/flexlmm","owner":"birneylab","description":"Flexible linear mixed model framework for Genome Wide Association Studies ","archived":false,"fork":false,"pushed_at":"2025-09-04T13:54:37.000Z","size":6745,"stargazers_count":18,"open_issues_count":2,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-09-04T15:35:09.680Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/birneylab.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-09-04T15:32:06.000Z","updated_at":"2025-09-04T13:54:40.000Z","dependencies_parsed_at":"2024-05-08T17:46:20.609Z","dependency_job_id":"62ae8db6-f0df-43cd-8c7d-1f706b33ddaa","html_url":"https://github.com/birneylab/flexlmm","commit_stats":null,"previous_names":["birneylab/flexlmm"],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/birneylab/flexlmm","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/birneylab","download_url":"https://codeload.github.com/birneylab/flexlmm/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274181286,"owners_count":25236549,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"birneylab","name":"birneylab","uuid":"48245282","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/48245282?v=4","repositories_count":3,"last_synced_at":"2023-03-09T04:35:20.380Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/birneylab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-18T17:54:31.549Z","updated_at":"2023-03-09T04:35:20.384Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/birneylab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/birneylab/repositories"},"packages":[],"commits":{"id":10938031,"full_name":"birneylab/flexlmm","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-09-05T09:29:31.355Z","updated_at":"2025-09-05T09:29:31.355Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5482481,"commits_count":853982201,"contributors_count":31119904,"owners_count":907868,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"birneylab/flexlmm","html_url":"https://github.com/birneylab/flexlmm","last_synced_at":"2025-08-31T15:54:33.829Z","status":null,"issues_count":4,"pull_requests_count":0,"avg_time_to_close_issue":598554.0,"avg_time_to_close_pull_request":null,"issues_closed_count":2,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":3,"avg_comments_per_issue":0.75,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":598554.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.75,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-08-29T20:07:49.940Z","updated_at":"2025-08-31T15:54:33.830Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/birneylab%2Fflexlmm/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4},"pull_request_author_associations_count":{},"issue_authors":{"saudat-bio-code":2,"RoniHaas":1,"marcora":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095926,"issues_count":31397479,"pull_requests_count":97150418,"authors_count":10700329,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":4},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"saudat-bio-code":2,"marcora":1,"RoniHaas":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CreateEvent":4,"IssuesEvent":5,"ReleaseEvent":1,"WatchEvent":11,"DeleteEvent":2,"IssueCommentEvent":9,"MemberEvent":1,"PushEvent":31},"last_year":{"CreateEvent":4,"IssuesEvent":5,"ReleaseEvent":1,"WatchEvent":11,"DeleteEvent":2,"IssueCommentEvent":9,"MemberEvent":1,"PushEvent":31}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-08T17:46:20.533Z","updated_at":"2024-05-08T17:46:20.533Z","repository_link":"https://github.com/birneylab/flexlmm/blob/main/modules/nf-core/bcftools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-08T17:46:20.574Z","updated_at":"2024-05-08T17:46:20.574Z","repository_link":"https://github.com/birneylab/flexlmm/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-05-08T17:46:20.585Z","updated_at":"2024-05-08T17:46:20.585Z","repository_link":"https://github.com/birneylab/flexlmm/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:17.599Z","updated_at":"2025-10-07T08:17:21.203Z","avatar_url":"https://github.com/birneylab.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1002/gepi.21893","https://doi.org/10.1093/bioinformatics/btac455","https://doi.org/10.48550/ARXIV.2410.01533","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/42684","html_url":"https://science.ecosyste.ms/projects/42684","bibtex_url":"https://science.ecosyste.ms/projects/42684/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/42684/export.apalike"}