{"id":43315,"name":"smallvariants","description":"A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data","url":"https://github.com/nf-cmgg/smallvariants","last_synced_at":"2025-09-05T09:46:47.385Z","repository":{"id":37398858,"uuid":"505716703","full_name":"nf-cmgg/smallvariants","owner":"nf-cmgg","description":"A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data","archived":false,"fork":false,"pushed_at":"2025-08-27T13:20:29.000Z","size":11366,"stargazers_count":13,"open_issues_count":16,"forks_count":3,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-27T18:19:42.485Z","etag":null,"topics":["annotation","cram","genotyping","germline","germline-variant-calling","ngs","ngs-pipeline","short-reads"],"latest_commit_sha":null,"homepage":"https://nf-cmgg.github.io/smallvariants/","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-cmgg.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-06-21T06:24:40.000Z","updated_at":"2025-08-19T22:16:07.000Z","dependencies_parsed_at":"2025-04-13T01:24:37.729Z","dependency_job_id":"157fad50-d272-4647-a75d-ac1596787d19","html_url":"https://github.com/nf-cmgg/smallvariants","commit_stats":null,"previous_names":["nf-cmgg/germline","nf-cmgg/smallvariants"],"tags_count":26,"template":false,"template_full_name":null,"purl":"pkg:github/nf-cmgg/smallvariants","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-cmgg","download_url":"https://codeload.github.com/nf-cmgg/smallvariants/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273740540,"owners_count":25159432,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-cmgg","name":"Center For Medical Genetics Ghent - Nextflow workflows","uuid":"161462937","kind":"organization","description":"Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows","email":"ict@cmgg.be","website":"www.cmgg.be","location":"Belgium","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/161462937?v=4","repositories_count":1,"last_synced_at":"2024-02-27T14:38:07.148Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-cmgg","funding_links":[],"total_stars":7,"followers":null,"following":null,"created_at":"2024-02-27T14:38:07.153Z","updated_at":"2024-02-27T14:38:07.153Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-cmgg","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-cmgg/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"nf-cmgg/smallvariants","html_url":"https://github.com/nf-cmgg/smallvariants","last_synced_at":"2025-09-01T11:07:57.016Z","status":null,"issues_count":2,"pull_requests_count":14,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":658397.4444444445,"issues_closed_count":0,"pull_requests_closed_count":9,"pull_request_authors_count":4,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.07142857142857142,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":2,"past_year_pull_requests_count":14,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":658397.4444444445,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":9,"past_year_pull_request_authors_count":4,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.07142857142857142,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":9,"created_at":"2025-08-29T15:22:51.631Z","updated_at":"2025-09-01T11:07:57.017Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-cmgg%2Fsmallvariants/issues","issue_labels_count":{"bug":1,"enhancement":1},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":2},"pull_request_author_associations_count":{"MEMBER":12,"NONE":2},"issue_authors":{"nvnieuwk":1,"matthdsm":1},"pull_request_authors":{"nvnieuwk":7,"matthdsm":5,"ThomasSte01":1,"Tuur-ds":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10095847,"issues_count":31414178,"pull_requests_count":97181322,"authors_count":10701051,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":1,"enhancement":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":2},"past_year_pull_request_author_associations_count":{"MEMBER":12,"NONE":2},"past_year_issue_authors":{"matthdsm":1,"nvnieuwk":1},"past_year_pull_request_authors":{"nvnieuwk":7,"matthdsm":5,"ThomasSte01":1,"Tuur-ds":1},"maintainers":[{"login":"nvnieuwk","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nvnieuwk"},{"login":"matthdsm","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/matthdsm"}],"active_maintainers":[{"login":"nvnieuwk","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nvnieuwk"},{"login":"matthdsm","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/matthdsm"}]},"events":{"total":{"CreateEvent":12,"ReleaseEvent":2,"IssuesEvent":3,"WatchEvent":4,"DeleteEvent":7,"IssueCommentEvent":10,"PushEvent":51,"PullRequestReviewCommentEvent":6,"PullRequestReviewEvent":16,"PullRequestEvent":24,"ForkEvent":2},"last_year":{"CreateEvent":12,"ReleaseEvent":2,"IssuesEvent":3,"WatchEvent":4,"DeleteEvent":7,"IssueCommentEvent":10,"PushEvent":51,"PullRequestReviewCommentEvent":6,"PullRequestReviewEvent":16,"PullRequestEvent":24,"ForkEvent":2}},"keywords":["annotation","cram","genotyping","germline","germline-variant-calling","ngs","ngs-pipeline","short-reads"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-19T09:31:13.596Z","updated_at":"2023-02-19T09:31:13.596Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/linting.yml","dependencies":[{"id":7783661408,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7783661409,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7783661410,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":7783661411,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7783661412,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7783661413,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7783661414,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-02-19T09:31:13.618Z","updated_at":"2023-02-19T09:31:13.618Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":7783661430,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7783661438,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-02-19T09:31:13.461Z","updated_at":"2023-02-19T09:31:13.461Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/branch.yml","dependencies":[{"id":7783660998,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-02-19T09:31:13.527Z","updated_at":"2023-02-19T09:31:13.527Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/ci.yml","dependencies":[{"id":7783661116,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7783661117,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7783661118,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-02-19T09:31:13.573Z","updated_at":"2023-02-19T09:31:13.573Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":7783661366,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7783661367,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.588Z","updated_at":"2023-10-11T13:25:06.588Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":14149272052,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/annotate/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.600Z","updated_at":"2023-10-11T13:25:06.600Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/annotate/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/concat/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.604Z","updated_at":"2023-10-11T13:25:06.604Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/concat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/filter/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.608Z","updated_at":"2023-10-11T13:25:06.608Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/filter/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/pluginscatter/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.612Z","updated_at":"2023-10-11T13:25:06.612Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/pluginscatter/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/query/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.620Z","updated_at":"2023-10-11T13:25:06.620Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/query/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/reheader/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.624Z","updated_at":"2023-10-11T13:25:06.624Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/reheader/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.628Z","updated_at":"2023-10-11T13:25:06.628Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.632Z","updated_at":"2023-10-11T13:25:06.632Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/intersect/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.636Z","updated_at":"2023-10-11T13:25:06.636Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/intersect/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.640Z","updated_at":"2023-10-11T13:25:06.640Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/split/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.644Z","updated_at":"2023-10-11T13:25:06.644Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/split/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ensemblvep/vep/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.654Z","updated_at":"2023-10-11T13:25:06.654Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/ensemblvep/vep/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/calibratedragstrmodel/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.658Z","updated_at":"2023-10-11T13:25:06.658Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/calibratedragstrmodel/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/composestrtablefile/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.663Z","updated_at":"2023-10-11T13:25:06.663Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/composestrtablefile/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/createsequencedictionary/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.668Z","updated_at":"2023-10-11T13:25:06.668Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/createsequencedictionary/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/genomicsdbimport/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.672Z","updated_at":"2023-10-11T13:25:06.672Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/genomicsdbimport/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/genotypegvcfs/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.676Z","updated_at":"2023-10-11T13:25:06.676Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/genotypegvcfs/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gatk4/haplotypecaller/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.680Z","updated_at":"2023-10-11T13:25:06.680Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/haplotypecaller/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/mosdepth/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.688Z","updated_at":"2023-10-11T13:25:06.688Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/mosdepth/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.692Z","updated_at":"2023-10-11T13:25:06.692Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rtgtools/format/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.701Z","updated_at":"2023-10-11T13:25:06.701Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/format/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rtgtools/pedfilter/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.708Z","updated_at":"2023-10-11T13:25:06.708Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/pedfilter/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rtgtools/rocplot/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.713Z","updated_at":"2023-10-11T13:25:06.713Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/rocplot/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rtgtools/vcfeval/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.718Z","updated_at":"2023-10-11T13:25:06.718Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/vcfeval/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/faidx/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.723Z","updated_at":"2023-10-11T13:25:06.723Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/faidx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.727Z","updated_at":"2023-10-11T13:25:06.727Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.732Z","updated_at":"2023-10-11T13:25:06.732Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/somalier/extract/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.741Z","updated_at":"2023-10-11T13:25:06.741Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/somalier/extract/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/somalier/relate/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.745Z","updated_at":"2023-10-11T13:25:06.745Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/somalier/relate/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgzip/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.749Z","updated_at":"2023-10-11T13:25:06.749Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/bgzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/tabix/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.753Z","updated_at":"2023-10-11T13:25:06.753Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/tabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.757Z","updated_at":"2023-10-11T13:25:06.757Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/vcf2db/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.761Z","updated_at":"2023-10-11T13:25:06.761Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vcf2db/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/vcfanno/meta.yml","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.766Z","updated_at":"2023-10-11T13:25:06.766Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vcfanno/meta.yml","dependencies":[]},{"ecosystem":"docker","filepath":"assets/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-10-11T13:25:06.782Z","updated_at":"2023-10-11T13:25:06.782Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/assets/Dockerfile","dependencies":[{"id":14149272061,"package_name":"mambaorg/micromamba","ecosystem":"docker","requirements":"1.4-focal","direct":true,"kind":"build","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/norm/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.154Z","updated_at":"2023-12-11T15:41:24.154Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/norm/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ensemblvep/download/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.332Z","updated_at":"2023-12-11T15:41:24.332Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/ensemblvep/download/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gawk/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.415Z","updated_at":"2023-12-11T15:41:24.415Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gawk/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/convert/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.512Z","updated_at":"2023-12-11T15:41:24.512Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/convert/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgziptabix/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.574Z","updated_at":"2023-12-11T15:41:24.574Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/bgziptabix/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/vardictjava/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T15:41:24.799Z","updated_at":"2023-12-11T15:41:24.799Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vardictjava/meta.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-03-04T09:41:29.805Z","updated_at":"2024-03-04T09:41:29.805Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":16590009220,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8","direct":true,"kind":"composite","optional":false},{"id":16590009221,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0a5c61591373683505ea898e09a3ea4f39ef2b9c","direct":true,"kind":"composite","optional":false},{"id":16590009222,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-03-04T09:41:36.097Z","updated_at":"2024-03-04T09:41:36.097Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-03-04T09:41:36.118Z","updated_at":"2024-03-04T09:41:36.118Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/build-docs.yml","sha":null,"kind":"manifest","created_at":"2024-04-29T14:39:29.951Z","updated_at":"2024-04-29T14:39:29.951Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/.github/workflows/build-docs.yml","dependencies":[{"id":17796771953,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":17796771954,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":17796771955,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/elprep/fastatoelfasta/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-19T14:36:49.345Z","updated_at":"2025-03-19T14:36:49.345Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/elprep/fastatoelfasta/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/elprep/filter/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-19T14:36:49.386Z","updated_at":"2025-03-19T14:36:49.386Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/elprep/filter/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/local/vcf_annotate_ensemblvep/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-19T14:36:49.777Z","updated_at":"2025-03-19T14:36:49.777Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/subworkflows/local/vcf_annotate_ensemblvep/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-19T14:36:49.846Z","updated_at":"2025-03-19T14:36:49.846Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"conda","filepath":"modules/nf-core/elprep/fastatoelfasta/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:28.065Z","updated_at":"2025-04-13T01:24:28.065Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/elprep/fastatoelfasta/environment.yml","dependencies":[{"id":22661590926,"package_name":"elprep","ecosystem":"conda","requirements":"5.1.3.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/elprep/filter/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:29.650Z","updated_at":"2025-04-13T01:24:29.650Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/elprep/filter/environment.yml","dependencies":[{"id":22661591274,"package_name":"elprep","ecosystem":"conda","requirements":"5.1.3.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"modules/nf-core/ensemblvep/vep/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:29.717Z","updated_at":"2025-04-13T01:24:29.717Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/ensemblvep/vep/environment.yml","dependencies":[{"id":22661591343,"package_name":"ensembl-vep","ecosystem":"conda","requirements":"112.0.*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/annotate/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.022Z","updated_at":"2025-04-13T01:24:31.022Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/annotate/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/concat/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.064Z","updated_at":"2025-04-13T01:24:31.064Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/concat/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/filter/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.105Z","updated_at":"2025-04-13T01:24:31.105Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/filter/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/norm/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.147Z","updated_at":"2025-04-13T01:24:31.147Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/norm/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/pluginscatter/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.189Z","updated_at":"2025-04-13T01:24:31.189Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/pluginscatter/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/query/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.231Z","updated_at":"2025-04-13T01:24:31.231Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/query/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/reheader/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.274Z","updated_at":"2025-04-13T01:24:31.274Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/reheader/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/sort/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.315Z","updated_at":"2025-04-13T01:24:31.315Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/sort/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bcftools/stats/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.357Z","updated_at":"2025-04-13T01:24:31.357Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bcftools/stats/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bedtools/intersect/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.398Z","updated_at":"2025-04-13T01:24:31.398Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/intersect/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bedtools/merge/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.440Z","updated_at":"2025-04-13T01:24:31.440Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/merge/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bedtools/split/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.481Z","updated_at":"2025-04-13T01:24:31.481Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/bedtools/split/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/ensemblvep/download/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.543Z","updated_at":"2025-04-13T01:24:31.543Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/ensemblvep/download/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/calibratedragstrmodel/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.596Z","updated_at":"2025-04-13T01:24:31.596Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/calibratedragstrmodel/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/composestrtablefile/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.638Z","updated_at":"2025-04-13T01:24:31.638Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/composestrtablefile/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/createsequencedictionary/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.680Z","updated_at":"2025-04-13T01:24:31.680Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/createsequencedictionary/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/genomicsdbimport/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.723Z","updated_at":"2025-04-13T01:24:31.723Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/genomicsdbimport/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/genotypegvcfs/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.766Z","updated_at":"2025-04-13T01:24:31.766Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/genotypegvcfs/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gatk4/haplotypecaller/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.807Z","updated_at":"2025-04-13T01:24:31.807Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gatk4/haplotypecaller/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/gawk/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.850Z","updated_at":"2025-04-13T01:24:31.850Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/gawk/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/mosdepth/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.893Z","updated_at":"2025-04-13T01:24:31.893Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/mosdepth/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.935Z","updated_at":"2025-04-13T01:24:31.935Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/rtgtools/format/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:31.976Z","updated_at":"2025-04-13T01:24:31.976Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/format/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/rtgtools/pedfilter/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.018Z","updated_at":"2025-04-13T01:24:32.018Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/pedfilter/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/rtgtools/rocplot/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.062Z","updated_at":"2025-04-13T01:24:32.062Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/rocplot/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/rtgtools/vcfeval/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.109Z","updated_at":"2025-04-13T01:24:32.109Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/rtgtools/vcfeval/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/convert/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.152Z","updated_at":"2025-04-13T01:24:32.152Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/convert/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/faidx/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.194Z","updated_at":"2025-04-13T01:24:32.194Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/faidx/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/index/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.236Z","updated_at":"2025-04-13T01:24:32.236Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/index/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/merge/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.474Z","updated_at":"2025-04-13T01:24:32.474Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/samtools/merge/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/somalier/extract/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.516Z","updated_at":"2025-04-13T01:24:32.516Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/somalier/extract/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/somalier/relate/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.557Z","updated_at":"2025-04-13T01:24:32.557Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/somalier/relate/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/tabix/bgzip/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.599Z","updated_at":"2025-04-13T01:24:32.599Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/bgzip/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/tabix/bgziptabix/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.641Z","updated_at":"2025-04-13T01:24:32.641Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/bgziptabix/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/tabix/tabix/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.684Z","updated_at":"2025-04-13T01:24:32.684Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/tabix/tabix/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/untar/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.726Z","updated_at":"2025-04-13T01:24:32.726Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/untar/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/vardictjava/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.768Z","updated_at":"2025-04-13T01:24:32.768Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vardictjava/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/vcf2db/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.809Z","updated_at":"2025-04-13T01:24:32.809Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vcf2db/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/vcfanno/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-13T01:24:32.855Z","updated_at":"2025-04-13T01:24:32.855Z","repository_link":"https://github.com/nf-cmgg/smallvariants/blob/main/modules/nf-core/vcfanno/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:18.357Z","updated_at":"2025-10-07T08:17:33.365Z","avatar_url":"https://github.com/nf-cmgg.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/43315","html_url":"https://science.ecosyste.ms/projects/43315","bibtex_url":"https://science.ecosyste.ms/projects/43315/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/43315/export.apalike"}