{"id":43790,"name":"hicberg","description":"Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction","url":"https://github.com/sebgra/hicberg","last_synced_at":"2025-09-05T09:59:51.859Z","repository":{"id":269973589,"uuid":"651689291","full_name":"sebgra/hicberg","owner":"sebgra","description":"Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction","archived":false,"fork":false,"pushed_at":"2025-06-17T17:48:52.000Z","size":155420,"stargazers_count":2,"open_issues_count":8,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-21T06:38:31.052Z","etag":null,"topics":["bioinformatics","genomics","hi-c","statistics"],"latest_commit_sha":null,"homepage":"https://sebgra.github.io/hicberg/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sebgra.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-06-09T20:29:42.000Z","updated_at":"2025-07-07T13:46:34.000Z","dependencies_parsed_at":"2025-06-04T15:40:47.142Z","dependency_job_id":null,"html_url":"https://github.com/sebgra/hicberg","commit_stats":null,"previous_names":["sebgra/hicberg"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/sebgra/hicberg","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra","download_url":"https://codeload.github.com/sebgra/hicberg/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273740851,"owners_count":25159434,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"sebgra","name":null,"uuid":"43416466","kind":"user","description":"I'm a bioengineer and developper specilized in Bioinformatics, Biological image processing, machine \u0026 deep learning, drug development and biomecanics","email":"","website":null,"location":"France","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/43416466?u=f0ea4454b5ec4d0bec48dab434c67459f7d2ed08\u0026v=4","repositories_count":1,"last_synced_at":"2023-07-22T17:36:38.253Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sebgra","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-22T17:36:38.264Z","updated_at":"2023-07-22T17:36:38.264Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra/repositories"},"packages":[{"id":11229078,"name":"hicberg","ecosystem":"pypi","description":"Standalone command line tool to visualize coverage from a BAM file","homepage":"https://github.com/sebgra/hicberg","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/sebgra/hicberg","keywords_array":[],"namespace":null,"versions_count":2,"first_release_published_at":"2024-12-31T10:11:36.000Z","latest_release_published_at":"2025-06-04T15:08:39.000Z","latest_release_number":"1.0.1","last_synced_at":"2025-08-21T05:49:50.116Z","created_at":"2024-12-31T10:15:38.444Z","updated_at":"2025-08-21T05:57:49.304Z","registry_url":"https://pypi.org/project/hicberg/","install_command":"pip install hicberg --index-url https://pypi.org/simple","documentation_url":"https://hicberg.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 3 - Alpha","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Operating System :: MacOS","Operating System :: Microsoft :: Windows","Operating System :: POSIX","Operating System :: Unix","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.11","Topic :: Scientific/Engineering","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Scientific/Engineering :: Visualization"],"normalized_name":"hicberg","project_status":null},"repo_metadata":{"id":269973589,"uuid":"651689291","full_name":"sebgra/hicberg","owner":"sebgra","description":"Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction","archived":false,"fork":false,"pushed_at":"2025-06-17T17:48:52.000Z","size":155420,"stargazers_count":2,"open_issues_count":8,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-07-20T16:04:33.311Z","etag":null,"topics":["bioinformatics","genomics","hi-c","statistics"],"latest_commit_sha":null,"homepage":"https://sebgra.github.io/hicberg/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/sebgra.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-06-09T20:29:42.000Z","updated_at":"2025-07-07T13:46:34.000Z","dependencies_parsed_at":"2025-06-04T15:40:47.142Z","dependency_job_id":null,"html_url":"https://github.com/sebgra/hicberg","commit_stats":null,"previous_names":["sebgra/hicberg"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/sebgra/hicberg","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra","download_url":"https://codeload.github.com/sebgra/hicberg/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271435242,"owners_count":24759321,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-21T02:00:08.990Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"sebgra","name":null,"uuid":"43416466","kind":"user","description":"I'm a bioengineer and developper specilized in Bioinformatics, Biological image processing, machine \u0026 deep learning, drug development and biomecanics","email":"","website":null,"location":"France","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/43416466?u=f0ea4454b5ec4d0bec48dab434c67459f7d2ed08\u0026v=4","repositories_count":1,"last_synced_at":"2023-07-22T17:36:38.253Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/sebgra","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-22T17:36:38.264Z","updated_at":"2023-07-22T17:36:38.264Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/sebgra/repositories"},"tags":[{"name":"v1.0.1","sha":"358dc8957918a07e8ec34eb7c3dc86e0a50cc91c","kind":"commit","published_at":"2025-06-04T14:52:03.000Z","download_url":"https://codeload.github.com/sebgra/hicberg/tar.gz/v1.0.1","html_url":"https://github.com/sebgra/hicberg/releases/tag/v1.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sebgra/hicberg@v1.0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/v1.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/v1.0.1/manifests"},{"name":"v1.0.0","sha":"a3bd64b8ca6c8f99af2a7a39da90e3a29b2114b5","kind":"commit","published_at":"2024-12-31T09:38:01.000Z","download_url":"https://codeload.github.com/sebgra/hicberg/tar.gz/v1.0.0","html_url":"https://github.com/sebgra/hicberg/releases/tag/v1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sebgra/hicberg@v1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/v1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/v1.0.0/manifests"},{"name":"Setup","sha":"21ac3763207502832201ee4b49e4633685ea515f","kind":"commit","published_at":"2024-12-30T20:13:27.000Z","download_url":"https://codeload.github.com/sebgra/hicberg/tar.gz/Setup","html_url":"https://github.com/sebgra/hicberg/releases/tag/Setup","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/sebgra/hicberg@Setup","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/Setup","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/tags/Setup/manifests"}]},"repo_metadata_updated_at":"2025-08-21T05:57:49.303Z","dependent_packages_count":0,"downloads":19,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":55.29832619769959,"dependent_packages_count":9.823231607234556,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":32.56077890246707},"purl":"pkg:pypi/hicberg","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/hicberg","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/hicberg","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/hicberg/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicberg/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicberg/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicberg/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/hicberg/related_packages","maintainers":[{"uuid":"sebgra","login":"sebgra","name":null,"email":null,"url":null,"packages_count":1,"html_url":"https://pypi.org/user/sebgra/","role":"Owner","created_at":"2024-12-31T10:23:40.734Z","updated_at":"2024-12-31T10:23:40.734Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/sebgra/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":725081,"maintainers_count":308355,"namespaces_count":0,"keywords_count":238006,"github":"pypi","metadata":{"funded_packages_count":50519},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-05T05:40:58.860Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"sebgra/hicberg","html_url":"https://github.com/sebgra/hicberg","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-30T10:20:32.007Z","updated_at":"2025-08-31T04:05:53.282Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sebgra%2Fhicberg/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":8},"pull_request_author_associations_count":{},"issue_authors":{"sebgra":8},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10097364,"issues_count":31428117,"pull_requests_count":97242359,"authors_count":10701128,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":8},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"sebgra":8},"past_year_pull_request_authors":{},"maintainers":[{"login":"sebgra","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sebgra"}],"active_maintainers":[{"login":"sebgra","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sebgra"}]},"events":{"total":{"CreateEvent":4,"IssuesEvent":11,"ReleaseEvent":9,"WatchEvent":2,"DeleteEvent":1,"PublicEvent":1,"PushEvent":77,"ForkEvent":1},"last_year":{"CreateEvent":4,"IssuesEvent":11,"ReleaseEvent":9,"WatchEvent":2,"DeleteEvent":1,"PublicEvent":1,"PushEvent":77,"ForkEvent":1}},"keywords":["bioinformatics","genomics","hi-c","statistics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/build.yml","sha":null,"kind":"manifest","created_at":"2024-12-27T15:34:32.790Z","updated_at":"2024-12-27T15:34:32.790Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/.github/workflows/build.yml","dependencies":[{"id":21294291037,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":21294291038,"package_name":"mamba-org/setup-micromamba","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2024-12-27T15:36:32.572Z","updated_at":"2024-12-27T15:36:32.572Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/Dockerfile","dependencies":[{"id":21294336625,"package_name":"condaforge/mambaforge","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"hicberg.egg-info/requires.txt","sha":null,"kind":"manifest","created_at":"2024-12-27T15:36:37.907Z","updated_at":"2024-12-27T15:36:37.907Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/hicberg.egg-info/requires.txt","dependencies":[{"id":21294337865,"package_name":"bioframe","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294337868,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294337870,"package_name":"click","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294337872,"package_name":"cooler","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294337874,"package_name":"funcy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338144,"package_name":"hicstuff","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338145,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338146,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338147,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338148,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338149,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338150,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338151,"package_name":"statsmodels","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-12-27T15:36:38.679Z","updated_at":"2024-12-27T15:36:38.679Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/requirements.txt","dependencies":[{"id":21294338292,"package_name":"bioframe","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338293,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338294,"package_name":"click","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338295,"package_name":"cooler","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338296,"package_name":"funcy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338297,"package_name":"hicstuff","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338298,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338299,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338300,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338301,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338302,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338303,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21294338304,"package_name":"statsmodels","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2024-12-27T15:36:38.885Z","updated_at":"2024-12-27T15:36:38.885Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/setup.py","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/gh-pages.yml","sha":null,"kind":"manifest","created_at":"2025-06-04T15:38:51.379Z","updated_at":"2025-06-04T15:38:51.379Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/.github/workflows/gh-pages.yml","dependencies":[{"id":23452007181,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":23452007182,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":23452007183,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"3.7.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/publish.yml","sha":null,"kind":"manifest","created_at":"2025-06-04T15:38:51.639Z","updated_at":"2025-06-04T15:38:51.639Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/.github/workflows/publish.yml","dependencies":[{"id":23452007325,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":23452007326,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":23452007327,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"27b31702a0e7fc50959f5ad993c78deac1bdfc29","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2025-06-04T15:38:51.809Z","updated_at":"2025-06-04T15:38:51.809Z","repository_link":"https://github.com/sebgra/hicberg/blob/main/environment.yml","dependencies":[{"id":23452007731,"package_name":"_libgcc_mutex","ecosystem":"conda","requirements":"0.1","direct":true,"kind":"runtime","optional":false},{"id":23452007732,"package_name":"_openmp_mutex","ecosystem":"conda","requirements":"4.5","direct":true,"kind":"runtime","optional":false},{"id":23452007733,"package_name":"aioeasywebdav","ecosystem":"conda","requirements":"2.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452007751,"package_name":"aiohttp","ecosystem":"conda","requirements":"3.9.1","direct":true,"kind":"runtime","optional":false},{"id":23452007752,"package_name":"aiosignal","ecosystem":"conda","requirements":"1.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452007753,"package_name":"alsa-lib","ecosystem":"conda","requirements":"1.2.9","direct":true,"kind":"runtime","optional":false},{"id":23452008134,"package_name":"amply","ecosystem":"conda","requirements":"0.1.6","direct":true,"kind":"runtime","optional":false},{"id":23452008195,"package_name":"appdirs","ecosystem":"conda","requirements":"1.4.4","direct":true,"kind":"runtime","optional":false},{"id":23452008297,"package_name":"asttokens","ecosystem":"conda","requirements":"2.2.1","direct":true,"kind":"runtime","optional":false},{"id":23452008298,"package_name":"attmap","ecosystem":"conda","requirements":"0.13.2","direct":true,"kind":"runtime","optional":false},{"id":23452008417,"package_name":"attr","ecosystem":"conda","requirements":"2.5.1","direct":true,"kind":"runtime","optional":false},{"id":23452008487,"package_name":"attrs","ecosystem":"conda","requirements":"23.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452008488,"package_name":"backcall","ecosystem":"conda","requirements":"0.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452008489,"package_name":"backports","ecosystem":"conda","requirements":"1.0","direct":true,"kind":"runtime","optional":false},{"id":23452008492,"package_name":"backports.functools_lru_cache","ecosystem":"conda","requirements":"1.6.5","direct":true,"kind":"runtime","optional":false},{"id":23452010201,"package_name":"bcrypt","ecosystem":"conda","requirements":"4.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452010284,"package_name":"boto3","ecosystem":"conda","requirements":"1.33.6","direct":true,"kind":"runtime","optional":false},{"id":23452010287,"package_name":"botocore","ecosystem":"conda","requirements":"1.33.6","direct":true,"kind":"runtime","optional":false},{"id":23452010297,"package_name":"brotli","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452010298,"package_name":"brotli-bin","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452010299,"package_name":"brotli-python","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452010393,"package_name":"bzip2","ecosystem":"conda","requirements":"1.0.8","direct":true,"kind":"runtime","optional":false},{"id":23452010394,"package_name":"c-ares","ecosystem":"conda","requirements":"1.23.0","direct":true,"kind":"runtime","optional":false},{"id":23452010395,"package_name":"ca-certificates","ecosystem":"conda","requirements":"2023.11.17","direct":true,"kind":"runtime","optional":false},{"id":23452010396,"package_name":"cachetools","ecosystem":"conda","requirements":"5.3.2","direct":true,"kind":"runtime","optional":false},{"id":23452011166,"package_name":"cairo","ecosystem":"conda","requirements":"1.16.0","direct":true,"kind":"runtime","optional":false},{"id":23452011167,"package_name":"cffi","ecosystem":"conda","requirements":"1.16.0","direct":true,"kind":"runtime","optional":false},{"id":23452011168,"package_name":"chardet","ecosystem":"conda","requirements":"4.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452011169,"package_name":"charset-normalizer","ecosystem":"conda","requirements":"3.3.2","direct":true,"kind":"runtime","optional":false},{"id":23452011170,"package_name":"coin-or-cbc","ecosystem":"conda","requirements":"2.10.10","direct":true,"kind":"runtime","optional":false},{"id":23452011172,"package_name":"coin-or-cgl","ecosystem":"conda","requirements":"0.60.7","direct":true,"kind":"runtime","optional":false},{"id":23452011173,"package_name":"coin-or-clp","ecosystem":"conda","requirements":"1.17.8","direct":true,"kind":"runtime","optional":false},{"id":23452011175,"package_name":"coin-or-osi","ecosystem":"conda","requirements":"0.108.8","direct":true,"kind":"runtime","optional":false},{"id":23452011638,"package_name":"coin-or-utils","ecosystem":"conda","requirements":"2.11.9","direct":true,"kind":"runtime","optional":false},{"id":23452011706,"package_name":"coincbc","ecosystem":"conda","requirements":"2.10.10","direct":true,"kind":"runtime","optional":false},{"id":23452011707,"package_name":"colorama","ecosystem":"conda","requirements":"0.4.6","direct":true,"kind":"runtime","optional":false},{"id":23452011708,"package_name":"comm","ecosystem":"conda","requirements":"0.1.3","direct":true,"kind":"runtime","optional":false},{"id":23452011709,"package_name":"configargparse","ecosystem":"conda","requirements":"1.7","direct":true,"kind":"runtime","optional":false},{"id":23452011831,"package_name":"connection_pool","ecosystem":"conda","requirements":"0.0.3","direct":true,"kind":"runtime","optional":false},{"id":23452011832,"package_name":"cryptography","ecosystem":"conda","requirements":"41.0.5","direct":true,"kind":"runtime","optional":false},{"id":23452011833,"package_name":"datrie","ecosystem":"conda","requirements":"0.8.2","direct":true,"kind":"runtime","optional":false},{"id":23452011929,"package_name":"dbus","ecosystem":"conda","requirements":"1.13.6","direct":true,"kind":"runtime","optional":false},{"id":23452011931,"package_name":"debugpy","ecosystem":"conda","requirements":"1.6.7","direct":true,"kind":"runtime","optional":false},{"id":23452011933,"package_name":"decorator","ecosystem":"conda","requirements":"5.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452011934,"package_name":"defusedxml","ecosystem":"conda","requirements":"0.7.1","direct":true,"kind":"runtime","optional":false},{"id":23452011935,"package_name":"docutils","ecosystem":"conda","requirements":"0.20.1","direct":true,"kind":"runtime","optional":false},{"id":23452011936,"package_name":"dpath","ecosystem":"conda","requirements":"2.1.6","direct":true,"kind":"runtime","optional":false},{"id":23452012141,"package_name":"dropbox","ecosystem":"conda","requirements":"11.36.2","direct":true,"kind":"runtime","optional":false},{"id":23452012142,"package_name":"eido","ecosystem":"conda","requirements":"0.2.2","direct":true,"kind":"runtime","optional":false},{"id":23452012161,"package_name":"exceptiongroup","ecosystem":"conda","requirements":"1.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452012162,"package_name":"executing","ecosystem":"conda","requirements":"1.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452012163,"package_name":"expat","ecosystem":"conda","requirements":"2.5.0","direct":true,"kind":"runtime","optional":false},{"id":23452012164,"package_name":"filechunkio","ecosystem":"conda","requirements":"1.8","direct":true,"kind":"runtime","optional":false},{"id":23452012252,"package_name":"font-ttf-dejavu-sans-mono","ecosystem":"conda","requirements":"2.37","direct":true,"kind":"runtime","optional":false},{"id":23452012273,"package_name":"font-ttf-inconsolata","ecosystem":"conda","requirements":"3.000","direct":true,"kind":"runtime","optional":false},{"id":23452012295,"package_name":"font-ttf-source-code-pro","ecosystem":"conda","requirements":"2.038","direct":true,"kind":"runtime","optional":false},{"id":23452012314,"package_name":"font-ttf-ubuntu","ecosystem":"conda","requirements":"0.83","direct":true,"kind":"runtime","optional":false},{"id":23452012315,"package_name":"fontconfig","ecosystem":"conda","requirements":"2.14.2","direct":true,"kind":"runtime","optional":false},{"id":23452012316,"package_name":"fonts-conda-ecosystem","ecosystem":"conda","requirements":"1","direct":true,"kind":"runtime","optional":false},{"id":23452012319,"package_name":"fonts-conda-forge","ecosystem":"conda","requirements":"1","direct":true,"kind":"runtime","optional":false},{"id":23452012327,"package_name":"freetype","ecosystem":"conda","requirements":"2.12.1","direct":true,"kind":"runtime","optional":false},{"id":23452012328,"package_name":"frozenlist","ecosystem":"conda","requirements":"1.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452012329,"package_name":"ftputil","ecosystem":"conda","requirements":"5.0.4","direct":true,"kind":"runtime","optional":false},{"id":23452012347,"package_name":"gettext","ecosystem":"conda","requirements":"0.21.1","direct":true,"kind":"runtime","optional":false},{"id":23452012348,"package_name":"gitdb","ecosystem":"conda","requirements":"4.0.11","direct":true,"kind":"runtime","optional":false},{"id":23452012349,"package_name":"gitpython","ecosystem":"conda","requirements":"3.1.40","direct":true,"kind":"runtime","optional":false},{"id":23452012603,"package_name":"glib","ecosystem":"conda","requirements":"2.78.1","direct":true,"kind":"runtime","optional":false},{"id":23452012604,"package_name":"glib-tools","ecosystem":"conda","requirements":"2.78.1","direct":true,"kind":"runtime","optional":false},{"id":23452012605,"package_name":"google-api-core","ecosystem":"conda","requirements":"2.14.0","direct":true,"kind":"runtime","optional":false},{"id":23452012606,"package_name":"google-api-python-client","ecosystem":"conda","requirements":"2.109.0","direct":true,"kind":"runtime","optional":false},{"id":23452012618,"package_name":"google-auth","ecosystem":"conda","requirements":"2.24.0","direct":true,"kind":"runtime","optional":false},{"id":23452012619,"package_name":"google-auth-httplib2","ecosystem":"conda","requirements":"0.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452012621,"package_name":"google-cloud-core","ecosystem":"conda","requirements":"2.3.3","direct":true,"kind":"runtime","optional":false},{"id":23452012622,"package_name":"google-cloud-storage","ecosystem":"conda","requirements":"2.13.0","direct":true,"kind":"runtime","optional":false},{"id":23452012658,"package_name":"google-crc32c","ecosystem":"conda","requirements":"1.1.2","direct":true,"kind":"runtime","optional":false},{"id":23452012878,"package_name":"google-resumable-media","ecosystem":"conda","requirements":"2.6.0","direct":true,"kind":"runtime","optional":false},{"id":23452012970,"package_name":"googleapis-common-protos","ecosystem":"conda","requirements":"1.61.0","direct":true,"kind":"runtime","optional":false},{"id":23452012972,"package_name":"graphite2","ecosystem":"conda","requirements":"1.3.13","direct":true,"kind":"runtime","optional":false},{"id":23452012973,"package_name":"grpcio","ecosystem":"conda","requirements":"1.59.3","direct":true,"kind":"runtime","optional":false},{"id":23452012974,"package_name":"gst-plugins-base","ecosystem":"conda","requirements":"1.22.5","direct":true,"kind":"runtime","optional":false},{"id":23452012975,"package_name":"gstreamer","ecosystem":"conda","requirements":"1.22.5","direct":true,"kind":"runtime","optional":false},{"id":23452012976,"package_name":"harfbuzz","ecosystem":"conda","requirements":"7.3.0","direct":true,"kind":"runtime","optional":false},{"id":23452012977,"package_name":"htslib","ecosystem":"conda","requirements":"1.17","direct":true,"kind":"runtime","optional":false},{"id":23452012981,"package_name":"httplib2","ecosystem":"conda","requirements":"0.22.0","direct":true,"kind":"runtime","optional":false},{"id":23452012991,"package_name":"humanfriendly","ecosystem":"conda","requirements":"10.0","direct":true,"kind":"runtime","optional":false},{"id":23452012997,"package_name":"icu","ecosystem":"conda","requirements":"72.1","direct":true,"kind":"runtime","optional":false},{"id":23452012999,"package_name":"idna","ecosystem":"conda","requirements":"3.6","direct":true,"kind":"runtime","optional":false},{"id":23452013002,"package_name":"importlib-metadata","ecosystem":"conda","requirements":"6.8.0","direct":true,"kind":"runtime","optional":false},{"id":23452013005,"package_name":"importlib_metadata","ecosystem":"conda","requirements":"6.8.0","direct":true,"kind":"runtime","optional":false},{"id":23452013007,"package_name":"importlib_resources","ecosystem":"conda","requirements":"6.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452013220,"package_name":"iniconfig","ecosystem":"conda","requirements":"2.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452013222,"package_name":"ipykernel","ecosystem":"conda","requirements":"6.24.0","direct":true,"kind":"runtime","optional":false},{"id":23452013223,"package_name":"ipympl","ecosystem":"conda","requirements":"0.9.3","direct":true,"kind":"runtime","optional":false},{"id":23452013456,"package_name":"ipython","ecosystem":"conda","requirements":"8.14.0","direct":true,"kind":"runtime","optional":false},{"id":23452013457,"package_name":"ipython_genutils","ecosystem":"conda","requirements":"0.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452013460,"package_name":"ipywidgets","ecosystem":"conda","requirements":"8.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452013462,"package_name":"jedi","ecosystem":"conda","requirements":"0.18.2","direct":true,"kind":"runtime","optional":false},{"id":23452013466,"package_name":"jinja2","ecosystem":"conda","requirements":"3.1.2","direct":true,"kind":"runtime","optional":false},{"id":23452013467,"package_name":"jmespath","ecosystem":"conda","requirements":"1.0.1","direct":true,"kind":"runtime","optional":false},{"id":23452013469,"package_name":"jsonschema","ecosystem":"conda","requirements":"4.20.0","direct":true,"kind":"runtime","optional":false},{"id":23452013473,"package_name":"jsonschema-specifications","ecosystem":"conda","requirements":"2023.11.2","direct":true,"kind":"runtime","optional":false},{"id":23452013865,"package_name":"jupyter_client","ecosystem":"conda","requirements":"8.3.0","direct":true,"kind":"runtime","optional":false},{"id":23452013866,"package_name":"jupyter_core","ecosystem":"conda","requirements":"5.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452013867,"package_name":"jupyterlab_widgets","ecosystem":"conda","requirements":"3.0.9","direct":true,"kind":"runtime","optional":false},{"id":23452013881,"package_name":"keyutils","ecosystem":"conda","requirements":"1.6.1","direct":true,"kind":"runtime","optional":false},{"id":23452013907,"package_name":"krb5","ecosystem":"conda","requirements":"1.21.2","direct":true,"kind":"runtime","optional":false},{"id":23452013908,"package_name":"lame","ecosystem":"conda","requirements":"3.100","direct":true,"kind":"runtime","optional":false},{"id":23452013909,"package_name":"lcms2","ecosystem":"conda","requirements":"2.15","direct":true,"kind":"runtime","optional":false},{"id":23452013910,"package_name":"ld_impl_linux-64","ecosystem":"conda","requirements":"2.40","direct":true,"kind":"runtime","optional":false},{"id":23452013911,"package_name":"lerc","ecosystem":"conda","requirements":"4.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452013912,"package_name":"libabseil","ecosystem":"conda","requirements":"20230802.1","direct":true,"kind":"runtime","optional":false},{"id":23452013913,"package_name":"libblas","ecosystem":"conda","requirements":"3.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452013914,"package_name":"libbrotlicommon","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452013915,"package_name":"libbrotlidec","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452013916,"package_name":"libbrotlienc","ecosystem":"conda","requirements":"1.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452013917,"package_name":"libcap","ecosystem":"conda","requirements":"2.69","direct":true,"kind":"runtime","optional":false},{"id":23452013925,"package_name":"libcblas","ecosystem":"conda","requirements":"3.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452013926,"package_name":"libclang","ecosystem":"conda","requirements":"15.0.7","direct":true,"kind":"runtime","optional":false},{"id":23452013927,"package_name":"libclang13","ecosystem":"conda","requirements":"15.0.7","direct":true,"kind":"runtime","optional":false},{"id":23452013928,"package_name":"libcrc32c","ecosystem":"conda","requirements":"1.1.2","direct":true,"kind":"runtime","optional":false},{"id":23452013931,"package_name":"libcups","ecosystem":"conda","requirements":"2.3.3","direct":true,"kind":"runtime","optional":false},{"id":23452013935,"package_name":"libcurl","ecosystem":"conda","requirements":"8.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452013939,"package_name":"libdeflate","ecosystem":"conda","requirements":"1.18","direct":true,"kind":"runtime","optional":false},{"id":23452013942,"package_name":"libedit","ecosystem":"conda","requirements":"3.1.20191231","direct":true,"kind":"runtime","optional":false},{"id":23452013944,"package_name":"libev","ecosystem":"conda","requirements":"4.33","direct":true,"kind":"runtime","optional":false},{"id":23452013946,"package_name":"libevent","ecosystem":"conda","requirements":"2.1.12","direct":true,"kind":"runtime","optional":false},{"id":23452014025,"package_name":"libexpat","ecosystem":"conda","requirements":"2.5.0","direct":true,"kind":"runtime","optional":false},{"id":23452014026,"package_name":"libffi","ecosystem":"conda","requirements":"3.4.2","direct":true,"kind":"runtime","optional":false},{"id":23452014027,"package_name":"libflac","ecosystem":"conda","requirements":"1.4.3","direct":true,"kind":"runtime","optional":false},{"id":23452014028,"package_name":"libgcc-ng","ecosystem":"conda","requirements":"13.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452014029,"package_name":"libgcrypt","ecosystem":"conda","requirements":"1.10.3","direct":true,"kind":"runtime","optional":false},{"id":23452014479,"package_name":"libgfortran-ng","ecosystem":"conda","requirements":"13.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452014480,"package_name":"libgfortran5","ecosystem":"conda","requirements":"13.2.0","direct":true,"kind":"runtime","optional":false},{"id":23452014481,"package_name":"libglib","ecosystem":"conda","requirements":"2.78.1","direct":true,"kind":"runtime","optional":false},{"id":23452014482,"package_name":"libgomp","ecosystem":"conda","requirements":"13.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452014483,"package_name":"libgpg-error","ecosystem":"conda","requirements":"1.47","direct":true,"kind":"runtime","optional":false},{"id":23452014504,"package_name":"libgrpc","ecosystem":"conda","requirements":"1.59.3","direct":true,"kind":"runtime","optional":false},{"id":23452014505,"package_name":"libiconv","ecosystem":"conda","requirements":"1.17","direct":true,"kind":"runtime","optional":false},{"id":23452014506,"package_name":"libjpeg-turbo","ecosystem":"conda","requirements":"2.1.5.1","direct":true,"kind":"runtime","optional":false},{"id":23452014507,"package_name":"liblapack","ecosystem":"conda","requirements":"3.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452014508,"package_name":"liblapacke","ecosystem":"conda","requirements":"3.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452014509,"package_name":"libllvm15","ecosystem":"conda","requirements":"15.0.7","direct":true,"kind":"runtime","optional":false},{"id":23452014519,"package_name":"libnghttp2","ecosystem":"conda","requirements":"1.58.0","direct":true,"kind":"runtime","optional":false},{"id":23452014520,"package_name":"libnsl","ecosystem":"conda","requirements":"2.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452014532,"package_name":"libogg","ecosystem":"conda","requirements":"1.3.4","direct":true,"kind":"runtime","optional":false},{"id":23452014533,"package_name":"libopenblas","ecosystem":"conda","requirements":"0.3.25","direct":true,"kind":"runtime","optional":false},{"id":23452014534,"package_name":"libopus","ecosystem":"conda","requirements":"1.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452014535,"package_name":"libpng","ecosystem":"conda","requirements":"1.6.39","direct":true,"kind":"runtime","optional":false},{"id":23452014536,"package_name":"libpq","ecosystem":"conda","requirements":"15.4","direct":true,"kind":"runtime","optional":false},{"id":23452014537,"package_name":"libprotobuf","ecosystem":"conda","requirements":"4.24.4","direct":true,"kind":"runtime","optional":false},{"id":23452014538,"package_name":"libre2-11","ecosystem":"conda","requirements":"2023.06.02","direct":true,"kind":"runtime","optional":false},{"id":23452014539,"package_name":"libsndfile","ecosystem":"conda","requirements":"1.2.2","direct":true,"kind":"runtime","optional":false},{"id":23452014540,"package_name":"libsodium","ecosystem":"conda","requirements":"1.0.18","direct":true,"kind":"runtime","optional":false},{"id":23452014541,"package_name":"libsqlite","ecosystem":"conda","requirements":"3.42.0","direct":true,"kind":"runtime","optional":false},{"id":23452014542,"package_name":"libssh2","ecosystem":"conda","requirements":"1.11.0","direct":true,"kind":"runtime","optional":false},{"id":23452014543,"package_name":"libstdcxx-ng","ecosystem":"conda","requirements":"13.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452014544,"package_name":"libsystemd0","ecosystem":"conda","requirements":"254","direct":true,"kind":"runtime","optional":false},{"id":23452014550,"package_name":"libtiff","ecosystem":"conda","requirements":"4.6.0","direct":true,"kind":"runtime","optional":false},{"id":23452014551,"package_name":"libuuid","ecosystem":"conda","requirements":"2.38.1","direct":true,"kind":"runtime","optional":false},{"id":23452014552,"package_name":"libvorbis","ecosystem":"conda","requirements":"1.3.7","direct":true,"kind":"runtime","optional":false},{"id":23452014553,"package_name":"libwebp-base","ecosystem":"conda","requirements":"1.3.2","direct":true,"kind":"runtime","optional":false},{"id":23452014554,"package_name":"libxcb","ecosystem":"conda","requirements":"1.15","direct":true,"kind":"runtime","optional":false},{"id":23452014555,"package_name":"libxkbcommon","ecosystem":"conda","requirements":"1.6.0","direct":true,"kind":"runtime","optional":false},{"id":23452014556,"package_name":"libxml2","ecosystem":"conda","requirements":"2.11.5","direct":true,"kind":"runtime","optional":false},{"id":23452014557,"package_name":"libzlib","ecosystem":"conda","requirements":"1.2.13","direct":true,"kind":"runtime","optional":false},{"id":23452014558,"package_name":"logmuse","ecosystem":"conda","requirements":"0.2.6","direct":true,"kind":"runtime","optional":false},{"id":23452014560,"package_name":"lz4-c","ecosystem":"conda","requirements":"1.9.4","direct":true,"kind":"runtime","optional":false},{"id":23452014561,"package_name":"markdown-it-py","ecosystem":"conda","requirements":"3.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452015333,"package_name":"markupsafe","ecosystem":"conda","requirements":"2.1.3","direct":true,"kind":"runtime","optional":false},{"id":23452015334,"package_name":"matplotlib-base","ecosystem":"conda","requirements":"3.7.0","direct":true,"kind":"runtime","optional":false},{"id":23452015335,"package_name":"matplotlib-inline","ecosystem":"conda","requirements":"0.1.6","direct":true,"kind":"runtime","optional":false},{"id":23452015336,"package_name":"mdurl","ecosystem":"conda","requirements":"0.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452015652,"package_name":"mpg123","ecosystem":"conda","requirements":"1.32.3","direct":true,"kind":"runtime","optional":false},{"id":23452015653,"package_name":"multidict","ecosystem":"conda","requirements":"6.0.4","direct":true,"kind":"runtime","optional":false},{"id":23452015654,"package_name":"munkres","ecosystem":"conda","requirements":"1.1.4","direct":true,"kind":"runtime","optional":false},{"id":23452015655,"package_name":"mysql-common","ecosystem":"conda","requirements":"8.0.33","direct":true,"kind":"runtime","optional":false},{"id":23452015663,"package_name":"mysql-libs","ecosystem":"conda","requirements":"8.0.33","direct":true,"kind":"runtime","optional":false},{"id":23452015664,"package_name":"nbformat","ecosystem":"conda","requirements":"5.9.2","direct":true,"kind":"runtime","optional":false},{"id":23452015665,"package_name":"ncurses","ecosystem":"conda","requirements":"6.4","direct":true,"kind":"runtime","optional":false},{"id":23452015666,"package_name":"nest-asyncio","ecosystem":"conda","requirements":"1.5.6","direct":true,"kind":"runtime","optional":false},{"id":23452015667,"package_name":"nspr","ecosystem":"conda","requirements":"4.35","direct":true,"kind":"runtime","optional":false},{"id":23452015668,"package_name":"nss","ecosystem":"conda","requirements":"3.92","direct":true,"kind":"runtime","optional":false},{"id":23452015669,"package_name":"oauth2client","ecosystem":"conda","requirements":"4.1.3","direct":true,"kind":"runtime","optional":false},{"id":23452015674,"package_name":"openjpeg","ecosystem":"conda","requirements":"2.5.0","direct":true,"kind":"runtime","optional":false},{"id":23452015693,"package_name":"openssl","ecosystem":"conda","requirements":"3.1.4","direct":true,"kind":"runtime","optional":false},{"id":23452015694,"package_name":"packaging","ecosystem":"conda","requirements":"23.1","direct":true,"kind":"runtime","optional":false},{"id":23452015695,"package_name":"paramiko","ecosystem":"conda","requirements":"3.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452015734,"package_name":"parso","ecosystem":"conda","requirements":"0.8.3","direct":true,"kind":"runtime","optional":false},{"id":23452015735,"package_name":"pcre2","ecosystem":"conda","requirements":"10.42","direct":true,"kind":"runtime","optional":false},{"id":23452015736,"package_name":"peppy","ecosystem":"conda","requirements":"0.35.7","direct":true,"kind":"runtime","optional":false},{"id":23452015756,"package_name":"pexpect","ecosystem":"conda","requirements":"4.8.0","direct":true,"kind":"runtime","optional":false},{"id":23452015757,"package_name":"pickleshare","ecosystem":"conda","requirements":"0.7.5","direct":true,"kind":"runtime","optional":false},{"id":23452015758,"package_name":"pillow","ecosystem":"conda","requirements":"10.0.1","direct":true,"kind":"runtime","optional":false},{"id":23452015759,"package_name":"pip","ecosystem":"conda","requirements":"23.2","direct":true,"kind":"runtime","optional":false},{"id":23452015760,"package_name":"pixman","ecosystem":"conda","requirements":"0.42.2","direct":true,"kind":"runtime","optional":false},{"id":23452015761,"package_name":"pkgutil-resolve-name","ecosystem":"conda","requirements":"1.3.10","direct":true,"kind":"runtime","optional":false},{"id":23452015762,"package_name":"plac","ecosystem":"conda","requirements":"1.4.1","direct":true,"kind":"runtime","optional":false},{"id":23452015766,"package_name":"platformdirs","ecosystem":"conda","requirements":"3.9.1","direct":true,"kind":"runtime","optional":false},{"id":23452015767,"package_name":"ply","ecosystem":"conda","requirements":"3.11","direct":true,"kind":"runtime","optional":false},{"id":23452015768,"package_name":"prettytable","ecosystem":"conda","requirements":"3.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452015774,"package_name":"prompt-toolkit","ecosystem":"conda","requirements":"3.0.39","direct":true,"kind":"runtime","optional":false},{"id":23452015775,"package_name":"prompt_toolkit","ecosystem":"conda","requirements":"3.0.39","direct":true,"kind":"runtime","optional":false},{"id":23452016699,"package_name":"protobuf","ecosystem":"conda","requirements":"4.24.4","direct":true,"kind":"runtime","optional":false},{"id":23452016700,"package_name":"psutil","ecosystem":"conda","requirements":"5.9.5","direct":true,"kind":"runtime","optional":false},{"id":23452016701,"package_name":"pthread-stubs","ecosystem":"conda","requirements":"0.4","direct":true,"kind":"runtime","optional":false},{"id":23452016711,"package_name":"ptyprocess","ecosystem":"conda","requirements":"0.7.0","direct":true,"kind":"runtime","optional":false},{"id":23452016712,"package_name":"pulp","ecosystem":"conda","requirements":"2.7.0","direct":true,"kind":"runtime","optional":false},{"id":23452016721,"package_name":"pulseaudio-client","ecosystem":"conda","requirements":"16.1","direct":true,"kind":"runtime","optional":false},{"id":23452016723,"package_name":"pure_eval","ecosystem":"conda","requirements":"0.2.2","direct":true,"kind":"runtime","optional":false},{"id":23452016724,"package_name":"pyasn1","ecosystem":"conda","requirements":"0.5.1","direct":true,"kind":"runtime","optional":false},{"id":23452016733,"package_name":"pyasn1-modules","ecosystem":"conda","requirements":"0.3.0","direct":true,"kind":"runtime","optional":false},{"id":23452016736,"package_name":"pycparser","ecosystem":"conda","requirements":"2.21","direct":true,"kind":"runtime","optional":false},{"id":23452016737,"package_name":"pygments","ecosystem":"conda","requirements":"2.15.1","direct":true,"kind":"runtime","optional":false},{"id":23452016738,"package_name":"pynacl","ecosystem":"conda","requirements":"1.5.0","direct":true,"kind":"runtime","optional":false},{"id":23452016746,"package_name":"pyopenssl","ecosystem":"conda","requirements":"23.3.0","direct":true,"kind":"runtime","optional":false},{"id":23452016747,"package_name":"pyqt","ecosystem":"conda","requirements":"5.15.9","direct":true,"kind":"runtime","optional":false},{"id":23452016748,"package_name":"pyqt5-sip","ecosystem":"conda","requirements":"12.12.2","direct":true,"kind":"runtime","optional":false},{"id":23452016749,"package_name":"pysftp","ecosystem":"conda","requirements":"0.2.9","direct":true,"kind":"runtime","optional":false},{"id":23452016766,"package_name":"pysocks","ecosystem":"conda","requirements":"1.7.1","direct":true,"kind":"runtime","optional":false},{"id":23452016767,"package_name":"python","ecosystem":"conda","requirements":"3.11.4","direct":true,"kind":"runtime","optional":false},{"id":23452016768,"package_name":"python-dateutil","ecosystem":"conda","requirements":"2.8.2","direct":true,"kind":"runtime","optional":false},{"id":23452016769,"package_name":"python-fastjsonschema","ecosystem":"conda","requirements":"2.19.0","direct":true,"kind":"runtime","optional":false},{"id":23452016770,"package_name":"python-irodsclient","ecosystem":"conda","requirements":"1.1.9","direct":true,"kind":"runtime","optional":false},{"id":23452016772,"package_name":"python-tzdata","ecosystem":"conda","requirements":"2023.3","direct":true,"kind":"runtime","optional":false},{"id":23452016777,"package_name":"python_abi","ecosystem":"conda","requirements":"3.11","direct":true,"kind":"runtime","optional":false},{"id":23452016778,"package_name":"pyu2f","ecosystem":"conda","requirements":"0.1.5","direct":true,"kind":"runtime","optional":false},{"id":23452016785,"package_name":"pyyaml","ecosystem":"conda","requirements":"6.0.1","direct":true,"kind":"runtime","optional":false},{"id":23452016786,"package_name":"pyzmq","ecosystem":"conda","requirements":"25.1.0","direct":true,"kind":"runtime","optional":false},{"id":23452016787,"package_name":"qt-main","ecosystem":"conda","requirements":"5.15.8","direct":true,"kind":"runtime","optional":false},{"id":23452016788,"package_name":"re2","ecosystem":"conda","requirements":"2023.06.02","direct":true,"kind":"runtime","optional":false},{"id":23452016789,"package_name":"readline","ecosystem":"conda","requirements":"8.2","direct":true,"kind":"runtime","optional":false},{"id":23452016790,"package_name":"referencing","ecosystem":"conda","requirements":"0.31.1","direct":true,"kind":"runtime","optional":false},{"id":23452016801,"package_name":"requests","ecosystem":"conda","requirements":"2.31.0","direct":true,"kind":"runtime","optional":false},{"id":23452016802,"package_name":"reretry","ecosystem":"conda","requirements":"0.11.8","direct":true,"kind":"runtime","optional":false},{"id":23452017258,"package_name":"rich","ecosystem":"conda","requirements":"13.7.0","direct":true,"kind":"runtime","optional":false},{"id":23452017389,"package_name":"rpds-py","ecosystem":"conda","requirements":"0.13.2","direct":true,"kind":"runtime","optional":false},{"id":23452017546,"package_name":"rsa","ecosystem":"conda","requirements":"4.9","direct":true,"kind":"runtime","optional":false},{"id":23452017547,"package_name":"s3transfer","ecosystem":"conda","requirements":"0.8.2","direct":true,"kind":"runtime","optional":false},{"id":23452017666,"package_name":"samtools","ecosystem":"conda","requirements":"1.17","direct":true,"kind":"runtime","optional":false},{"id":23452017738,"package_name":"seqtk","ecosystem":"conda","requirements":"1.4","direct":true,"kind":"runtime","optional":false},{"id":23452018195,"package_name":"setuptools","ecosystem":"conda","requirements":"68.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452018196,"package_name":"setuptools-scm","ecosystem":"conda","requirements":"8.0.4","direct":true,"kind":"runtime","optional":false},{"id":23452018206,"package_name":"sip","ecosystem":"conda","requirements":"6.7.12","direct":true,"kind":"runtime","optional":false},{"id":23452018207,"package_name":"six","ecosystem":"conda","requirements":"1.16.0","direct":true,"kind":"runtime","optional":false},{"id":23452018208,"package_name":"slacker","ecosystem":"conda","requirements":"0.14.0","direct":true,"kind":"runtime","optional":false},{"id":23452018212,"package_name":"smart_open","ecosystem":"conda","requirements":"6.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452018824,"package_name":"smmap","ecosystem":"conda","requirements":"5.0.0","direct":true,"kind":"runtime","optional":false},{"id":23452018825,"package_name":"snakemake","ecosystem":"conda","requirements":"7.32.3","direct":true,"kind":"runtime","optional":false},{"id":23452018829,"package_name":"snakemake-minimal","ecosystem":"conda","requirements":"7.32.3","direct":true,"kind":"runtime","optional":false},{"id":23452018832,"package_name":"stack_data","ecosystem":"conda","requirements":"0.6.2","direct":true,"kind":"runtime","optional":false},{"id":23452018833,"package_name":"stone","ecosystem":"conda","requirements":"3.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452018834,"package_name":"stopit","ecosystem":"conda","requirements":"1.1.2","direct":true,"kind":"runtime","optional":false},{"id":23452018836,"package_name":"tabulate","ecosystem":"conda","requirements":"0.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452018839,"package_name":"throttler","ecosystem":"conda","requirements":"1.2.2","direct":true,"kind":"runtime","optional":false},{"id":23452018840,"package_name":"tk","ecosystem":"conda","requirements":"8.6.13","direct":true,"kind":"runtime","optional":false},{"id":23452018841,"package_name":"toml","ecosystem":"conda","requirements":"0.10.2","direct":true,"kind":"runtime","optional":false},{"id":23452018842,"package_name":"tomli","ecosystem":"conda","requirements":"2.0.1","direct":true,"kind":"runtime","optional":false},{"id":23452018843,"package_name":"toposort","ecosystem":"conda","requirements":"1.10","direct":true,"kind":"runtime","optional":false},{"id":23452018850,"package_name":"tornado","ecosystem":"conda","requirements":"6.3.2","direct":true,"kind":"runtime","optional":false},{"id":23452018851,"package_name":"traitlets","ecosystem":"conda","requirements":"5.9.0","direct":true,"kind":"runtime","optional":false},{"id":23452018852,"package_name":"typing-extensions","ecosystem":"conda","requirements":"4.7.1","direct":true,"kind":"runtime","optional":false},{"id":23452018853,"package_name":"typing_extensions","ecosystem":"conda","requirements":"4.7.1","direct":true,"kind":"runtime","optional":false},{"id":23452018854,"package_name":"tzdata","ecosystem":"conda","requirements":"2023c","direct":true,"kind":"runtime","optional":false},{"id":23452018909,"package_name":"ubiquerg","ecosystem":"conda","requirements":"0.6.3","direct":true,"kind":"runtime","optional":false},{"id":23452018910,"package_name":"uritemplate","ecosystem":"conda","requirements":"4.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452018943,"package_name":"veracitools","ecosystem":"conda","requirements":"0.1.3","direct":true,"kind":"runtime","optional":false},{"id":23452018944,"package_name":"wcwidth","ecosystem":"conda","requirements":"0.2.6","direct":true,"kind":"runtime","optional":false},{"id":23452018945,"package_name":"wheel","ecosystem":"conda","requirements":"0.40.0","direct":true,"kind":"runtime","optional":false},{"id":23452018946,"package_name":"widgetsnbextension","ecosystem":"conda","requirements":"4.0.9","direct":true,"kind":"runtime","optional":false},{"id":23452019488,"package_name":"wrapt","ecosystem":"conda","requirements":"1.16.0","direct":true,"kind":"runtime","optional":false},{"id":23452019489,"package_name":"xcb-util","ecosystem":"conda","requirements":"0.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452019490,"package_name":"xcb-util-image","ecosystem":"conda","requirements":"0.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452019554,"package_name":"xcb-util-keysyms","ecosystem":"conda","requirements":"0.4.0","direct":true,"kind":"runtime","optional":false},{"id":23452019691,"package_name":"xcb-util-renderutil","ecosystem":"conda","requirements":"0.3.9","direct":true,"kind":"runtime","optional":false},{"id":23452019951,"package_name":"xcb-util-wm","ecosystem":"conda","requirements":"0.4.1","direct":true,"kind":"runtime","optional":false},{"id":23452020347,"package_name":"xkeyboard-config","ecosystem":"conda","requirements":"2.40","direct":true,"kind":"runtime","optional":false},{"id":23452020650,"package_name":"xorg-kbproto","ecosystem":"conda","requirements":"1.0.7","direct":true,"kind":"runtime","optional":false},{"id":23452021861,"package_name":"xorg-libice","ecosystem":"conda","requirements":"1.1.1","direct":true,"kind":"runtime","optional":false},{"id":23452022299,"package_name":"xorg-libsm","ecosystem":"conda","requirements":"1.2.4","direct":true,"kind":"runtime","optional":false},{"id":23452022383,"package_name":"xorg-libx11","ecosystem":"conda","requirements":"1.8.7","direct":true,"kind":"runtime","optional":false},{"id":23452022604,"package_name":"xorg-libxau","ecosystem":"conda","requirements":"1.0.11","direct":true,"kind":"runtime","optional":false},{"id":23452022856,"package_name":"xorg-libxdmcp","ecosystem":"conda","requirements":"1.1.3","direct":true,"kind":"runtime","optional":false},{"id":23452023215,"package_name":"xorg-libxext","ecosystem":"conda","requirements":"1.3.4","direct":true,"kind":"runtime","optional":false},{"id":23452023602,"package_name":"xorg-libxrender","ecosystem":"conda","requirements":"0.9.11","direct":true,"kind":"runtime","optional":false},{"id":23452024746,"package_name":"xorg-renderproto","ecosystem":"conda","requirements":"0.11.1","direct":true,"kind":"runtime","optional":false},{"id":23452024761,"package_name":"xorg-xextproto","ecosystem":"conda","requirements":"7.3.0","direct":true,"kind":"runtime","optional":false},{"id":23452024775,"package_name":"xorg-xf86vidmodeproto","ecosystem":"conda","requirements":"2.3.1","direct":true,"kind":"runtime","optional":false},{"id":23452025162,"package_name":"xorg-xproto","ecosystem":"conda","requirements":"7.0.31","direct":true,"kind":"runtime","optional":false},{"id":23452025227,"package_name":"xz","ecosystem":"conda","requirements":"5.2.6","direct":true,"kind":"runtime","optional":false},{"id":23452025228,"package_name":"yaml","ecosystem":"conda","requirements":"0.2.5","direct":true,"kind":"runtime","optional":false},{"id":23452025229,"package_name":"yarl","ecosystem":"conda","requirements":"1.9.3","direct":true,"kind":"runtime","optional":false},{"id":23452025230,"package_name":"yte","ecosystem":"conda","requirements":"1.5.1","direct":true,"kind":"runtime","optional":false},{"id":23452025283,"package_name":"zeromq","ecosystem":"conda","requirements":"4.3.4","direct":true,"kind":"runtime","optional":false},{"id":23452025284,"package_name":"zipp","ecosystem":"conda","requirements":"3.16.2","direct":true,"kind":"runtime","optional":false},{"id":23452025285,"package_name":"zlib","ecosystem":"conda","requirements":"1.2.13","direct":true,"kind":"runtime","optional":false},{"id":23452025286,"package_name":"zstd","ecosystem":"conda","requirements":"1.5.5","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:18.934Z","updated_at":"2025-10-07T08:17:42.835Z","avatar_url":"https://github.com/sebgra.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":19,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.15594031"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/43790","html_url":"https://science.ecosyste.ms/projects/43790"}