{"id":43963,"name":"workshop-computational-reproducibility","description":"Material for the workshop 'Best Practices for Writing Reproducible Code'","url":"https://github.com/utrechtuniversity/workshop-computational-reproducibility","last_synced_at":"2025-09-05T10:02:37.169Z","repository":{"id":54382245,"uuid":"166825035","full_name":"UtrechtUniversity/workshop-computational-reproducibility","owner":"UtrechtUniversity","description":"Material for the workshop 'Best Practices for Writing Reproducible Code'","archived":false,"fork":false,"pushed_at":"2025-06-25T15:46:12.000Z","size":17969,"stargazers_count":11,"open_issues_count":19,"forks_count":13,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-07-03T10:49:41.813Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://utrechtuniversity.github.io/workshop-computational-reproducibility/","language":"SCSS","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/UtrechtUniversity.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-21T14:10:45.000Z","updated_at":"2025-06-25T15:46:13.000Z","dependencies_parsed_at":"2024-03-28T12:57:55.721Z","dependency_job_id":"2fe8ceb5-8ad4-48eb-90b3-743540753e06","html_url":"https://github.com/UtrechtUniversity/workshop-computational-reproducibility","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/UtrechtUniversity/workshop-computational-reproducibility","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UtrechtUniversity%2Fworkshop-computational-reproducibility","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UtrechtUniversity%2Fworkshop-computational-reproducibility/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UtrechtUniversity%2Fworkshop-computational-reproducibility/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UtrechtUniversity%2Fworkshop-computational-reproducibility/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UtrechtUniversity","download_url":"https://codeload.github.com/UtrechtUniversity/workshop-computational-reproducibility/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/UtrechtUniversity%2Fworkshop-computational-reproducibility/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273740850,"owners_count":25159434,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"UtrechtUniversity","name":"Utrecht University","uuid":"11516575","kind":"organization","description":"The central place for managing code and software for Utrecht University researchers and employees","email":"info.rdm@uu.nl","website":"https://www.uu.nl","location":"Utrecht, The Netherlands","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/11516575?v=4","repositories_count":85,"last_synced_at":"2023-02-28T15:30:37.374Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/UtrechtUniversity","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T17:59:27.702Z","updated_at":"2023-02-28T15:30:37.570Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UtrechtUniversity","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/UtrechtUniversity/repositories"},"packages":[],"commits":{"id":6641352,"full_name":"utrechtuniversity/workshop-computational-reproducibility","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-22T21:27:48.880Z","updated_at":"2024-11-22T21:27:48.880Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/utrechtuniversity%2Fworkshop-computational-reproducibility/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"utrechtuniversity/workshop-computational-reproducibility","html_url":"https://github.com/utrechtuniversity/workshop-computational-reproducibility","last_synced_at":"2025-08-31T11:17:46.287Z","status":null,"issues_count":53,"pull_requests_count":35,"avg_time_to_close_issue":43930425.85294118,"avg_time_to_close_pull_request":1146966.1612903227,"issues_closed_count":34,"pull_requests_closed_count":31,"pull_request_authors_count":7,"issue_authors_count":9,"avg_comments_per_issue":0.6037735849056604,"avg_comments_per_pull_request":0.22857142857142856,"merged_pull_requests_count":27,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":6,"past_year_pull_requests_count":14,"past_year_avg_time_to_close_issue":22166.0,"past_year_avg_time_to_close_pull_request":270833.6,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":10,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.35714285714285715,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":10,"created_at":"2024-11-22T21:27:53.023Z","updated_at":"2025-09-02T09:56:22.540Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/utrechtuniversity%2Fworkshop-computational-reproducibility","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/utrechtuniversity%2Fworkshop-computational-reproducibility/issues","issue_labels_count":{"chapter: code quality":5,"video":4,"enhancement":3,"chapter: preparation":2,"chapter: project setup":2,"chapter: reproducibility check":1,"chapter: dependency management":1,"chapter: project management":1,"chapter: version control":1,"bug":1,"chapter: documentation":1},"pull_request_labels_count":{},"issue_author_associations_count":{"CONTRIBUTOR":20,"COLLABORATOR":18,"MEMBER":12,"NONE":2},"pull_request_author_associations_count":{"MEMBER":31,"CONTRIBUTOR":7,"NONE":1,"COLLABORATOR":1},"issue_authors":{"bvreede":19,"nehamoopen":18,"chStaiger":6,"jelletreep":4,"laurensstoop":1,"javimangal":1,"jurra":1,"hanneoberman":1,"SanderKeulers":1},"pull_request_authors":{"jelletreep":17,"chStaiger":9,"bvreede":5,"hanneoberman":3,"DorienHuijser":3,"parisa-zahedi":2,"nehamoopen":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10097364,"issues_count":31428117,"pull_requests_count":97242359,"authors_count":10701128,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":5,"NONE":1},"past_year_pull_request_author_associations_count":{"MEMBER":12},"past_year_issue_authors":{"chStaiger":4,"jelletreep":1,"SanderKeulers":1},"past_year_pull_request_authors":{"chStaiger":6,"jelletreep":4,"DorienHuijser":2},"maintainers":[{"login":"jelletreep","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jelletreep"},{"login":"nehamoopen","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nehamoopen"},{"login":"chStaiger","count":15,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/chStaiger"},{"login":"DorienHuijser","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/DorienHuijser"},{"login":"parisa-zahedi","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/parisa-zahedi"},{"login":"laurensstoop","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/laurensstoop"},{"login":"javimangal","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/javimangal"}],"active_maintainers":[{"login":"chStaiger","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/chStaiger"},{"login":"jelletreep","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jelletreep"},{"login":"DorienHuijser","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/DorienHuijser"}]},"events":{"total":{"IssuesEvent":7,"WatchEvent":1,"DeleteEvent":9,"IssueCommentEvent":5,"PushEvent":71,"PullRequestReviewCommentEvent":28,"PullRequestReviewEvent":17,"PullRequestEvent":20,"CreateEvent":9},"last_year":{"IssuesEvent":7,"WatchEvent":1,"DeleteEvent":9,"IssueCommentEvent":5,"PushEvent":71,"PullRequestReviewCommentEvent":28,"PullRequestReviewEvent":17,"PullRequestEvent":20,"CreateEvent":9}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"templates/R/mypackage/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-13T14:00:48.362Z","updated_at":"2022-08-13T14:00:48.362Z","repository_link":"https://github.com/UtrechtUniversity/workshop-computational-reproducibility/blob/main/templates/R/mypackage/DESCRIPTION","dependencies":[{"id":1445117280,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1445117281,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":1445117282,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:19.145Z","updated_at":"2025-10-07T08:17:46.234Z","avatar_url":"https://github.com/UtrechtUniversity.png","language":"SCSS","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/43963","html_url":"https://science.ecosyste.ms/projects/43963","bibtex_url":"https://science.ecosyste.ms/projects/43963/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/43963/export.apalike"}