{"id":45057,"name":"aladdin-shotgun","description":null,"url":"https://github.com/zymo-research/aladdin-shotgun","last_synced_at":"2025-09-05T10:19:09.459Z","repository":{"id":201975201,"uuid":"616611792","full_name":"Zymo-Research/aladdin-shotgun","owner":"Zymo-Research","description":null,"archived":false,"fork":false,"pushed_at":"2025-08-15T02:42:39.000Z","size":9959,"stargazers_count":1,"open_issues_count":4,"forks_count":2,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-15T04:23:44.260Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Zymo-Research.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-03-20T18:19:20.000Z","updated_at":"2025-06-12T05:04:28.000Z","dependencies_parsed_at":"2024-06-26T22:06:18.662Z","dependency_job_id":"6e244276-5cca-4869-a6e1-71e1e21b7e6c","html_url":"https://github.com/Zymo-Research/aladdin-shotgun","commit_stats":null,"previous_names":["zymo-research/aladdin-shotgun"],"tags_count":16,"template":false,"template_full_name":null,"purl":"pkg:github/Zymo-Research/aladdin-shotgun","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Zymo-Research","download_url":"https://codeload.github.com/Zymo-Research/aladdin-shotgun/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273742727,"owners_count":25159899,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Zymo-Research","name":"Zymo Research","uuid":"17628767","kind":"organization","description":"Innovative \u0026 Quality tools for Epigenetics Research and DNA/RNA Purification.","email":null,"website":"http:///www.zymoresearch.com","location":"Irvine, CA, USA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17628767?v=4","repositories_count":22,"last_synced_at":"2023-02-27T14:55:17.839Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Zymo-Research","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-10T22:32:28.986Z","updated_at":"2023-02-27T14:55:17.854Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Zymo-Research","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Zymo-Research/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"Zymo-Research/aladdin-shotgun","html_url":"https://github.com/Zymo-Research/aladdin-shotgun","last_synced_at":"2025-08-31T18:26:05.452Z","status":null,"issues_count":4,"pull_requests_count":11,"avg_time_to_close_issue":34698101.25,"avg_time_to_close_pull_request":162988.66666666666,"issues_closed_count":4,"pull_requests_closed_count":9,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":0.5,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":11,"past_year_avg_time_to_close_issue":7157877.0,"past_year_avg_time_to_close_pull_request":162988.66666666666,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":9,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":9,"created_at":"2025-08-29T17:03:42.707Z","updated_at":"2025-09-03T00:42:57.920Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Zymo-Research%2Faladdin-shotgun/issues","issue_labels_count":{"bug":6},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":13},"pull_request_author_associations_count":{"COLLABORATOR":35},"issue_authors":{"zxl124":12,"nsharp2":1},"pull_request_authors":{"nsharp2":17,"zxl124":15,"annabelledamerum":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10097320,"issues_count":31426573,"pull_requests_count":97235070,"authors_count":10701179,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":13},"past_year_issue_authors":{"zxl124":1},"past_year_pull_request_authors":{"nsharp2":8,"zxl124":3,"annabelledamerum":2},"maintainers":[{"login":"zxl124","count":27,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zxl124"},{"login":"nsharp2","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nsharp2"},{"login":"annabelledamerum","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/annabelledamerum"}],"active_maintainers":[{"login":"nsharp2","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nsharp2"},{"login":"zxl124","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zxl124"},{"login":"annabelledamerum","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/annabelledamerum"}]},"events":{"total":{"CreateEvent":14,"IssuesEvent":5,"ReleaseEvent":1,"DeleteEvent":14,"PushEvent":79,"PullRequestReviewEvent":4,"PullRequestEvent":22},"last_year":{"CreateEvent":14,"IssuesEvent":5,"ReleaseEvent":1,"DeleteEvent":14,"PushEvent":79,"PullRequestReviewEvent":4,"PullRequestEvent":22}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/nf-core/adapterremoval/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.550Z","updated_at":"2023-12-11T19:50:21.550Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/adapterremoval/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bbmap/bbduk/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.557Z","updated_at":"2023-12-11T19:50:21.557Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/bbmap/bbduk/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.562Z","updated_at":"2023-12-11T19:50:21.562Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/bowtie2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/build/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.568Z","updated_at":"2023-12-11T19:50:21.568Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/bowtie2/build/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bracken/bracken/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.572Z","updated_at":"2023-12-11T19:50:21.572Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/bracken/bracken/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bracken/combinebrackenoutputs/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.576Z","updated_at":"2023-12-11T19:50:21.576Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/bracken/combinebrackenoutputs/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/cat/fastq/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.579Z","updated_at":"2023-12-11T19:50:21.579Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/cat/fastq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/centrifuge/centrifuge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.583Z","updated_at":"2023-12-11T19:50:21.583Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/centrifuge/centrifuge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/centrifuge/kreport/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.587Z","updated_at":"2023-12-11T19:50:21.587Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/centrifuge/kreport/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.590Z","updated_at":"2023-12-11T19:50:21.590Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/diamond/blastx/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.594Z","updated_at":"2023-12-11T19:50:21.594Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/diamond/blastx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/falco/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.598Z","updated_at":"2023-12-11T19:50:21.598Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/falco/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastp/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.602Z","updated_at":"2023-12-11T19:50:21.602Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/fastp/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.606Z","updated_at":"2023-12-11T19:50:21.606Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/filtlong/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.610Z","updated_at":"2023-12-11T19:50:21.610Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/filtlong/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.614Z","updated_at":"2023-12-11T19:50:21.614Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/gunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kaiju/kaiju/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.618Z","updated_at":"2023-12-11T19:50:21.618Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/kaiju/kaiju/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kaiju/kaiju2krona/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.622Z","updated_at":"2023-12-11T19:50:21.622Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/kaiju/kaiju2krona/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kaiju/kaiju2table/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.626Z","updated_at":"2023-12-11T19:50:21.626Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/kaiju/kaiju2table/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kraken2/kraken2/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.631Z","updated_at":"2023-12-11T19:50:21.631Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/kraken2/kraken2/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krakentools/combinekreports/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.636Z","updated_at":"2023-12-11T19:50:21.636Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/krakentools/combinekreports/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krakentools/kreport2krona/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.640Z","updated_at":"2023-12-11T19:50:21.640Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/krakentools/kreport2krona/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krakenuniq/preloadedkrakenuniq/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.644Z","updated_at":"2023-12-11T19:50:21.644Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/krakenuniq/preloadedkrakenuniq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/ktimporttaxonomy/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.648Z","updated_at":"2023-12-11T19:50:21.648Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/krona/ktimporttaxonomy/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/ktimporttext/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.654Z","updated_at":"2023-12-11T19:50:21.654Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/krona/ktimporttext/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/malt/run/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.660Z","updated_at":"2023-12-11T19:50:21.660Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/malt/run/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/megan/rma2info/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.664Z","updated_at":"2023-12-11T19:50:21.664Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/megan/rma2info/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/metaphlan4/mergemetaphlantables/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.668Z","updated_at":"2023-12-11T19:50:21.668Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/metaphlan4/mergemetaphlantables/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/metaphlan4/metaphlan4/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.672Z","updated_at":"2023-12-11T19:50:21.672Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/metaphlan4/metaphlan4/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/metaphlan4/qiimeprep/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.676Z","updated_at":"2023-12-11T19:50:21.676Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/metaphlan4/qiimeprep/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/metaphlan4/unmapped/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.681Z","updated_at":"2023-12-11T19:50:21.681Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/metaphlan4/unmapped/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/minimap2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.685Z","updated_at":"2023-12-11T19:50:21.685Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/minimap2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/minimap2/index/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.689Z","updated_at":"2023-12-11T19:50:21.689Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/minimap2/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/motus/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.694Z","updated_at":"2023-12-11T19:50:21.694Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/motus/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/motus/profile/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.697Z","updated_at":"2023-12-11T19:50:21.697Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/motus/profile/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.701Z","updated_at":"2023-12-11T19:50:21.701Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/porechop/porechop/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.705Z","updated_at":"2023-12-11T19:50:21.705Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/porechop/porechop/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/prinseqplusplus/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.709Z","updated_at":"2023-12-11T19:50:21.709Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/prinseqplusplus/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/qiime/import/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.713Z","updated_at":"2023-12-11T19:50:21.713Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/qiime/import/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/bam2fq/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.717Z","updated_at":"2023-12-11T19:50:21.717Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/samtools/bam2fq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.721Z","updated_at":"2023-12-11T19:50:21.721Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.725Z","updated_at":"2023-12-11T19:50:21.725Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/samtools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/view/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.730Z","updated_at":"2023-12-11T19:50:21.730Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/samtools/view/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/taxpasta/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.735Z","updated_at":"2023-12-11T19:50:21.735Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/taxpasta/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.739Z","updated_at":"2023-12-11T19:50:21.739Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.743Z","updated_at":"2023-12-11T19:50:21.743Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/Dockerfile","dependencies":[{"id":15034247465,"package_name":"python","ecosystem":"docker","requirements":"3.8-slim","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"assets/mqc_plugins/setup.py","sha":null,"kind":"manifest","created_at":"2023-12-11T19:50:21.749Z","updated_at":"2023-12-11T19:50:21.749Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/assets/mqc_plugins/setup.py","dependencies":[{"id":15034247466,"package_name":"multiqc","ecosystem":"pypi","requirements":"==1.14","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2024-06-26T22:06:18.015Z","updated_at":"2024-06-26T22:06:18.015Z","repository_link":"https://github.com/Zymo-Research/aladdin-shotgun/blob/main/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:20.421Z","updated_at":"2025-10-07T08:18:05.528Z","avatar_url":"https://github.com/Zymo-Research.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/45057","html_url":"https://science.ecosyste.ms/projects/45057","bibtex_url":"https://science.ecosyste.ms/projects/45057/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/45057/export.apalike"}