{"id":46565,"name":"krakenparser","description":"🗂️Parse multiple Kraken2 reports into CSV files on 6 taxonomical levels","url":"https://github.com/popoviilab/krakenparser","last_synced_at":"2025-09-05T10:50:29.187Z","repository":{"id":277815251,"uuid":"933564548","full_name":"PopovIILab/KrakenParser","owner":"PopovIILab","description":"🗂️Parse multiple Kraken2 reports into CSV files on 6 taxonomical levels","archived":false,"fork":false,"pushed_at":"2025-07-17T10:54:00.000Z","size":6559,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-08-20T22:18:25.716Z","etag":null,"topics":["kraken2","krakentools","metagenomic-pipeline","metagenomics"],"latest_commit_sha":null,"homepage":"https://pypi.org/project/KrakenParser/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PopovIILab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-02-16T09:19:20.000Z","updated_at":"2025-08-05T05:06:27.000Z","dependencies_parsed_at":"2025-07-17T16:39:04.785Z","dependency_job_id":"7ae3e2c2-a76b-4655-bc57-8c05fd642fc2","html_url":"https://github.com/PopovIILab/KrakenParser","commit_stats":null,"previous_names":["popoviilab/krakenparser"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/PopovIILab/KrakenParser","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab","download_url":"https://codeload.github.com/PopovIILab/KrakenParser/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273747802,"owners_count":25160652,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"PopovIILab","name":"Ilia and Igor Popov's Lab","uuid":"170358473","kind":"organization","description":"","email":"iljapopov17@gmail.com","website":null,"location":"Russian Federation","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/170358473?v=4","repositories_count":1,"last_synced_at":"2024-05-20T22:20:55.364Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/PopovIILab","funding_links":[],"total_stars":0,"followers":2,"following":0,"created_at":"2024-05-20T22:20:55.461Z","updated_at":"2024-05-20T22:20:55.461Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab/repositories"},"packages":[{"id":11357267,"name":"krakenparser","ecosystem":"pypi","description":"A collection of scripts designed to process Kraken2 reports and convert them into CSV format.","homepage":"https://github.com/PopovIILab/KrakenParser","licenses":"mit","normalized_licenses":["MIT"],"repository_url":"https://github.com/PopovIILab/KrakenParser","keywords_array":[],"namespace":null,"versions_count":11,"first_release_published_at":"2025-02-16T20:12:41.000Z","latest_release_published_at":"2025-07-17T10:55:11.000Z","latest_release_number":"0.6.1","last_synced_at":"2025-08-20T22:04:25.102Z","created_at":"2025-02-16T20:31:45.068Z","updated_at":"2025-08-20T22:29:24.519Z","registry_url":"https://pypi.org/project/krakenparser/","install_command":"pip install krakenparser --index-url https://pypi.org/simple","documentation_url":"https://krakenparser.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":[],"normalized_name":"krakenparser","project_status":null},"repo_metadata":{"id":277815251,"uuid":"933564548","full_name":"PopovIILab/KrakenParser","owner":"PopovIILab","description":"🗂️Parse multiple Kraken2 reports into CSV files on 6 taxonomical levels","archived":false,"fork":false,"pushed_at":"2025-06-23T12:38:52.000Z","size":6544,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-06-23T12:44:01.418Z","etag":null,"topics":["kraken2","krakentools","metagenomic-pipeline","metagenomics"],"latest_commit_sha":null,"homepage":"https://pypi.org/project/KrakenParser/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PopovIILab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-02-16T09:19:20.000Z","updated_at":"2025-06-23T12:38:56.000Z","dependencies_parsed_at":"2025-07-17T16:39:04.785Z","dependency_job_id":"7ae3e2c2-a76b-4655-bc57-8c05fd642fc2","html_url":"https://github.com/PopovIILab/KrakenParser","commit_stats":null,"previous_names":["popoviilab/krakenparser"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/PopovIILab/KrakenParser","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab","download_url":"https://codeload.github.com/PopovIILab/KrakenParser/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271394071,"owners_count":24751829,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-20T02:00:09.606Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"PopovIILab","name":"Ilia and Igor Popov's Lab","uuid":"170358473","kind":"organization","description":"","email":"iljapopov17@gmail.com","website":null,"location":"Russian Federation","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/170358473?v=4","repositories_count":1,"last_synced_at":"2024-05-20T22:20:55.364Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/PopovIILab","funding_links":[],"total_stars":0,"followers":2,"following":0,"created_at":"2024-05-20T22:20:55.461Z","updated_at":"2024-05-20T22:20:55.461Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PopovIILab/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-20T22:29:24.519Z","dependent_packages_count":0,"downloads":245,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":54.13540094386894,"dependent_packages_count":9.613679778355769,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":31.874540361112352},"purl":"pkg:pypi/krakenparser","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/krakenparser","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/krakenparser","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/krakenparser/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/krakenparser/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/krakenparser/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/krakenparser/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/krakenparser/related_packages","maintainers":[{"uuid":"iliapopov17","login":"iliapopov17","name":null,"email":null,"url":null,"packages_count":4,"html_url":"https://pypi.org/user/iliapopov17/","role":"Owner","created_at":"2025-02-16T22:32:06.854Z","updated_at":"2025-02-16T22:32:06.854Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/iliapopov17/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":725095,"maintainers_count":308359,"namespaces_count":0,"keywords_count":238006,"github":"pypi","metadata":{"funded_packages_count":50519},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-05T05:40:58.860Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"PopovIILab/KrakenParser","html_url":"https://github.com/PopovIILab/KrakenParser","last_synced_at":"2025-08-31T17:59:46.180Z","status":null,"issues_count":0,"pull_requests_count":9,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":8.333333333333334,"issues_closed_count":0,"pull_requests_closed_count":6,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":6,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":9,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":8.333333333333334,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":6,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":6,"created_at":"2025-08-29T17:11:17.000Z","updated_at":"2025-08-31T17:59:46.181Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/PopovIILab%2FKrakenParser/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"MEMBER":9},"issue_authors":{},"pull_request_authors":{"iliapopov17":9},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10097320,"issues_count":31426573,"pull_requests_count":97235070,"authors_count":10701179,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"MEMBER":9},"past_year_issue_authors":{},"past_year_pull_request_authors":{"iliapopov17":9},"maintainers":[{"login":"iliapopov17","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/iliapopov17"}],"active_maintainers":[{"login":"iliapopov17","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/iliapopov17"}]},"events":{"total":{"WatchEvent":1,"PublicEvent":1,"PushEvent":47,"GollumEvent":9,"PullRequestEvent":13,"CreateEvent":1},"last_year":{"WatchEvent":1,"PublicEvent":1,"PushEvent":47,"GollumEvent":9,"PullRequestEvent":13,"CreateEvent":1}},"keywords":["kraken2","krakentools","metagenomic-pipeline","metagenomics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2025-07-17T16:39:03.621Z","updated_at":"2025-07-17T16:39:03.621Z","repository_link":"https://github.com/PopovIILab/KrakenParser/blob/main/.github/workflows/ci.yml","dependencies":[{"id":24174497820,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":24174497831,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/draft-pdf.yml","sha":null,"kind":"manifest","created_at":"2025-07-17T16:39:04.157Z","updated_at":"2025-07-17T16:39:04.157Z","repository_link":"https://github.com/PopovIILab/KrakenParser/blob/main/.github/workflows/draft-pdf.yml","dependencies":[{"id":24174497924,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":24174497925,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":24174498043,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:22.077Z","updated_at":"2025-10-07T08:18:33.988Z","avatar_url":"https://github.com/PopovIILab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":245,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/46565","html_url":"https://science.ecosyste.ms/projects/46565","bibtex_url":"https://science.ecosyste.ms/projects/46565/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/46565/export.apalike"}