{"id":47420,"name":"funcscan","description":"(Meta-)genome screening for functional and natural product gene sequences","url":"https://github.com/nf-core/funcscan","last_synced_at":"2025-09-05T11:07:47.331Z","repository":{"id":38207570,"uuid":"437831414","full_name":"nf-core/funcscan","owner":"nf-core","description":"(Meta-)genome screening for functional and natural product gene sequences","archived":false,"fork":false,"pushed_at":"2025-09-03T12:29:56.000Z","size":26798,"stargazers_count":92,"open_issues_count":26,"forks_count":33,"subscribers_count":114,"default_branch":"master","last_synced_at":"2025-09-03T14:35:19.665Z","etag":null,"topics":["amp","amr","antibiotic-resistance","antimicrobial-peptides","antimicrobial-resistance-genes","arg","assembly","bgc","bioinformatics","biosynthetic-gene-clusters","contigs","function","metagenomics","natural-products","nextflow","nf-core","pipeline","screening","secondary-metabolites","workflow"],"latest_commit_sha":null,"homepage":"https://nf-co.re/funcscan","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nf-core.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2021-12-13T10:35:54.000Z","updated_at":"2025-08-17T18:39:35.000Z","dependencies_parsed_at":"2023-11-10T12:28:42.140Z","dependency_job_id":"bc5da94d-0cba-4ca6-b20c-df11176219a6","html_url":"https://github.com/nf-core/funcscan","commit_stats":{"total_commits":782,"total_committers":14,"mean_commits":"55.857142857142854","dds":0.6508951406649617,"last_synced_commit":"eb8f79ce5a966f5a01b398dfe7d881c04b697192"},"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/nf-core/funcscan","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","download_url":"https://codeload.github.com/nf-core/funcscan/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273747788,"owners_count":25160652,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"nf-core","name":"nf-core","uuid":"35520196","kind":"organization","description":"A community effort to collect a curated set of analysis pipelines built using Nextflow.","email":"core@nf-co.re","website":"http://nf-co.re","location":null,"twitter":"nf_core","company":null,"icon_url":"https://avatars.githubusercontent.com/u/35520196?v=4","repositories_count":84,"last_synced_at":"2023-03-01T20:50:19.252Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/nf-core","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-12T16:29:01.932Z","updated_at":"2023-03-01T20:50:19.281Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nf-core/repositories"},"packages":[],"commits":{"id":1317686,"full_name":"nf-core/funcscan","default_branch":"master","committers":[{"name":"James Fellows Yates","email":"jfy133@gmail.com","login":null,"count":273},{"name":"jasmezz","email":"jasmin.frangenberg@hki-jena.de","login":null,"count":169},{"name":"Louisa Perelo","email":"louisa.perelo@qbic.uni-tuebingen.de","login":null,"count":99},{"name":"Anan Ibrahim","email":"81744003+Darcy220606","login":"Darcy220606","count":81},{"name":"darcy220606","email":"ananhamido@hotmail.com","login":null,"count":65},{"name":"Jasmin F","email":"73216762+jasmezz","login":"jasmezz","count":37},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":27},{"name":"louperelo","email":"44900284+louperelo","login":"louperelo","count":22},{"name":"Moritz E. Beber","email":"midnighter@posteo.net","login":null,"count":4},{"name":"darcy220606","email":"AIbrahim@apate.hki-jena.de","login":null,"count":1},{"name":"Adam Talbot","email":"adam.talbot@seqera.io","login":null,"count":1},{"name":"Robert Syme","email":"rob.syme@gmail.com","login":null,"count":1},{"name":"Harshil Patel","email":"drpatelh","login":"drpatelh","count":1},{"name":"louperelo","email":"louperelo@gmail.com","login":null,"count":1}],"total_commits":782,"total_committers":14,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":55.857142857142854,"dds":0.6508951406649617,"past_year_committers":[{"name":"James Fellows Yates","email":"jfy133@gmail.com","login":null,"count":149},{"name":"jasmezz","email":"jasmin.frangenberg@hki-jena.de","login":null,"count":125},{"name":"darcy220606","email":"ananhamido@hotmail.com","login":null,"count":55},{"name":"Louisa Perelo","email":"louisa.perelo@qbic.uni-tuebingen.de","login":null,"count":54},{"name":"Anan Ibrahim","email":"81744003+Darcy220606","login":"Darcy220606","count":52},{"name":"Jasmin F","email":"73216762+jasmezz","login":"jasmezz","count":31},{"name":"nf-core-bot","email":"core@nf-co.re","login":null,"count":20},{"name":"louperelo","email":"44900284+louperelo","login":"louperelo","count":12},{"name":"Moritz E. Beber","email":"midnighter@posteo.net","login":null,"count":2},{"name":"Harshil Patel","email":"drpatelh","login":"drpatelh","count":1},{"name":"louperelo","email":"louperelo@gmail.com","login":null,"count":1},{"name":"Adam Talbot","email":"adam.talbot@seqera.io","login":null,"count":1},{"name":"Robert Syme","email":"rob.syme@gmail.com","login":null,"count":1}],"past_year_total_commits":504,"past_year_total_committers":13,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":38.76923076923077,"past_year_dds":0.7043650793650793,"last_synced_at":"2023-11-04T18:33:35.643Z","last_synced_commit":"eb8f79ce5a966f5a01b398dfe7d881c04b697192","created_at":"2023-06-15T18:12:09.809Z","updated_at":"2023-11-04T18:33:35.643Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"nf-core/funcscan","html_url":"https://github.com/nf-core/funcscan","last_synced_at":"2025-09-03T19:05:35.513Z","status":null,"issues_count":99,"pull_requests_count":189,"avg_time_to_close_issue":4928982.181818182,"avg_time_to_close_pull_request":749434.7454545455,"issues_closed_count":66,"pull_requests_closed_count":165,"pull_request_authors_count":17,"issue_authors_count":28,"avg_comments_per_issue":1.2525252525252526,"avg_comments_per_pull_request":1.9523809523809523,"merged_pull_requests_count":144,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":24,"past_year_pull_requests_count":48,"past_year_avg_time_to_close_issue":627457.5555555555,"past_year_avg_time_to_close_pull_request":529586.4324324324,"past_year_issues_closed_count":9,"past_year_pull_requests_closed_count":37,"past_year_pull_request_authors_count":10,"past_year_issue_authors_count":10,"past_year_avg_comments_per_issue":0.875,"past_year_avg_comments_per_pull_request":1.9375,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":30,"created_at":"2023-06-15T18:12:41.563Z","updated_at":"2025-09-03T19:05:35.515Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/nf-core%2Ffuncscan/issues","issue_labels_count":{"enhancement":51,"bug":46,"documentation":4,"low-priority":2,"requires-upstream-fix":1,"first-timers-only":1,"major":1},"pull_request_labels_count":{"enhancement":3,"bug":1},"issue_author_associations_count":{"NONE":39,"MEMBER":24,"COLLABORATOR":19,"CONTRIBUTOR":17},"pull_request_author_associations_count":{"COLLABORATOR":85,"MEMBER":62,"CONTRIBUTOR":31,"NONE":11},"issue_authors":{"jfy133":23,"jasmezz":19,"Darcy220606":15,"amizeranschi":12,"m3hdad":4,"alexhbnr":2,"ewissel":2,"louperelo":2,"martinklapper":1,"jolespin":1,"kiranpatil222":1,"Xinpeng021001":1,"tavareshugo":1,"jen-reeve":1,"jenmuell":1,"sunitj":1,"BenPonBiobrain":1,"asogg":1,"akp1d12":1,"pawelciurkaardigen":1,"nvnieuwk":1,"microbemarsh":1,"Microbion":1,"pdy1084":1,"tpellegrinetti":1,"xeniaroda29":1,"CarsonJM":1,"lucianhu":1},"pull_request_authors":{"jasmezz":85,"jfy133":43,"nf-core-bot":17,"Darcy220606":15,"louperelo":13,"mirpedrol":3,"Vedanth-Ramji":3,"ayushkamat":1,"robsyme":1,"HaidYi":1,"m3hdad":1,"tavareshugo":1,"mashehu":1,"andreirie":1,"Midnighter":1,"adamrtalbot":1,"bustand0":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10097229,"issues_count":31443311,"pull_requests_count":97295330,"authors_count":10701948,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":12,"enhancement":10},"past_year_pull_request_labels_count":{"enhancement":1},"past_year_issue_author_associations_count":{"NONE":17,"COLLABORATOR":4,"MEMBER":3},"past_year_pull_request_author_associations_count":{"COLLABORATOR":20,"MEMBER":17,"CONTRIBUTOR":6,"NONE":3},"past_year_issue_authors":{"amizeranschi":11,"jasmezz":4,"jfy133":2,"jen-reeve":1,"jolespin":1,"kiranpatil222":1,"lucianhu":1,"pawelciurkaardigen":1,"tpellegrinetti":1,"Xinpeng021001":1},"past_year_pull_request_authors":{"jasmezz":20,"nf-core-bot":8,"jfy133":7,"Darcy220606":4,"mirpedrol":2,"bustand0":1,"mashehu":1,"Vedanth-Ramji":1,"andreirie":1,"HaidYi":1},"maintainers":[{"login":"jasmezz","count":104,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jasmezz"},{"login":"jfy133","count":66,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jfy133"},{"login":"nf-core-bot","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"mirpedrol","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mirpedrol"},{"login":"Xinpeng021001","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Xinpeng021001"}],"active_maintainers":[{"login":"jasmezz","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jasmezz"},{"login":"jfy133","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jfy133"},{"login":"nf-core-bot","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nf-core-bot"},{"login":"mirpedrol","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mirpedrol"},{"login":"Xinpeng021001","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Xinpeng021001"}]},"events":{"total":{"CreateEvent":42,"ReleaseEvent":1,"IssuesEvent":37,"WatchEvent":16,"DeleteEvent":38,"IssueCommentEvent":185,"PushEvent":196,"PullRequestEvent":80,"PullRequestReviewCommentEvent":227,"PullRequestReviewEvent":173,"ForkEvent":10},"last_year":{"CreateEvent":42,"ReleaseEvent":1,"IssuesEvent":37,"WatchEvent":16,"DeleteEvent":38,"IssueCommentEvent":185,"PushEvent":196,"PullRequestEvent":80,"PullRequestReviewCommentEvent":227,"PullRequestReviewEvent":173,"ForkEvent":10}},"keywords":["amp","amr","antibiotic-resistance","antimicrobial-peptides","antimicrobial-resistance-genes","arg","assembly","bgc","bioinformatics","biosynthetic-gene-clusters","contigs","function","metagenomics","natural-products","nextflow","nf-core","pipeline","screening","secondary-metabolites","workflow"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:12.900Z","updated_at":"2023-09-23T11:14:12.900Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":13897780967,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13897780969,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.125Z","updated_at":"2023-09-23T11:14:13.125Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":13897780982,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13897780983,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.298Z","updated_at":"2023-09-23T11:14:13.298Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/branch.yml","dependencies":[{"id":13897780999,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.366Z","updated_at":"2023-09-23T11:14:13.366Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/ci.yml","dependencies":[{"id":13897781002,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13897781003,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13897781004,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.499Z","updated_at":"2023-09-23T11:14:13.499Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":13897781011,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.612Z","updated_at":"2023-09-23T11:14:13.612Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":13897781014,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13897781015,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.674Z","updated_at":"2023-09-23T11:14:13.674Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/linting.yml","dependencies":[{"id":13897781016,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13897781017,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":13897781018,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":13897781019,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13897781020,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":13897781021,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":13897781022,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.932Z","updated_at":"2023-09-23T11:14:13.932Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":13897781023,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":13897781024,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/abricate/run/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:13.977Z","updated_at":"2023-09-23T11:14:13.977Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/abricate/run/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ampcombi/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.018Z","updated_at":"2023-09-23T11:14:14.018Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/ampcombi/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ampir/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.045Z","updated_at":"2023-09-23T11:14:14.045Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/ampir/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/amplify/predict/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.260Z","updated_at":"2023-09-23T11:14:14.260Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/amplify/predict/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/amrfinderplus/run/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.352Z","updated_at":"2023-09-23T11:14:14.352Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/amrfinderplus/run/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/amrfinderplus/update/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.387Z","updated_at":"2023-09-23T11:14:14.387Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/amrfinderplus/update/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/antismash/antismashlite/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.412Z","updated_at":"2023-09-23T11:14:14.412Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/antismash/antismashlite/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/antismash/antismashlitedownloaddatabases/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.458Z","updated_at":"2023-09-23T11:14:14.458Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/antismash/antismashlitedownloaddatabases/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bakta/bakta/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.482Z","updated_at":"2023-09-23T11:14:14.482Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/bakta/bakta/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bakta/baktadbdownload/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.577Z","updated_at":"2023-09-23T11:14:14.577Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/bakta/baktadbdownload/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bioawk/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.634Z","updated_at":"2023-09-23T11:14:14.634Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/bioawk/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.657Z","updated_at":"2023-09-23T11:14:14.657Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeparg/downloaddata/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:14.712Z","updated_at":"2023-09-23T11:14:14.712Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/deeparg/downloaddata/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deeparg/predict/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:15.984Z","updated_at":"2023-09-23T11:14:15.984Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/deeparg/predict/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepbgc/download/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.047Z","updated_at":"2023-09-23T11:14:16.047Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/deepbgc/download/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/deepbgc/pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.489Z","updated_at":"2023-09-23T11:14:16.489Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/deepbgc/pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fargene/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.533Z","updated_at":"2023-09-23T11:14:16.533Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/fargene/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gecco/run/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.592Z","updated_at":"2023-09-23T11:14:16.592Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/gecco/run/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/gunzip/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.618Z","updated_at":"2023-09-23T11:14:16.618Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/gunzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/abricate/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.640Z","updated_at":"2023-09-23T11:14:16.640Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/abricate/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/amrfinderplus/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.665Z","updated_at":"2023-09-23T11:14:16.665Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/amrfinderplus/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/deeparg/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.686Z","updated_at":"2023-09-23T11:14:16.686Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/deeparg/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/fargene/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.705Z","updated_at":"2023-09-23T11:14:16.705Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/fargene/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/rgi/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.736Z","updated_at":"2023-09-23T11:14:16.736Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/rgi/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hamronization/summarize/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.768Z","updated_at":"2023-09-23T11:14:16.768Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hamronization/summarize/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/hmmer/hmmsearch/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.791Z","updated_at":"2023-09-23T11:14:16.791Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/hmmer/hmmsearch/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/macrel/contigs/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.814Z","updated_at":"2023-09-23T11:14:16.814Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/macrel/contigs/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.834Z","updated_at":"2023-09-23T11:14:16.834Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/prodigal/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.852Z","updated_at":"2023-09-23T11:14:16.852Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/prodigal/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/prokka/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.868Z","updated_at":"2023-09-23T11:14:16.868Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/prokka/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pyrodigal/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.886Z","updated_at":"2023-09-23T11:14:16.886Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/pyrodigal/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rgi/main/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.911Z","updated_at":"2023-09-23T11:14:16.911Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/rgi/main/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/tabix/bgzip/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.927Z","updated_at":"2023-09-23T11:14:16.927Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/tabix/bgzip/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/untar/meta.yml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.945Z","updated_at":"2023-09-23T11:14:16.945Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/modules/nf-core/untar/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-09-23T11:14:16.991Z","updated_at":"2023-09-23T11:14:16.991Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/pyproject.toml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2023-11-10T12:28:40.568Z","updated_at":"2023-11-10T12:28:40.568Z","repository_link":"https://github.com/nf-core/funcscan/blob/master/.github/workflows/release-announcments.yml","dependencies":[{"id":14403559863,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":14403559906,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14403559907,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false}]}],"score":7.409741954080923,"created_at":"2025-09-04T15:51:22.977Z","updated_at":"2025-10-07T08:18:50.373Z","avatar_url":"https://github.com/nf-core.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.7643099","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["pipelines","workflows","dsl2","nf-test","taxonomic-classification","nanopore","synapse","sra","geo","fastq"],"project_url":"https://science.ecosyste.ms/api/v1/projects/47420","html_url":"https://science.ecosyste.ms/projects/47420","bibtex_url":"https://science.ecosyste.ms/projects/47420/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/47420/export.apalike"}