{"id":47452,"name":"nf-core-multilocus","description":null,"url":"https://github.com/ythaworn/nf-core-multilocus","last_synced_at":"2025-09-05T11:08:05.659Z","repository":{"id":284450728,"uuid":"954015176","full_name":"ythaworn/nf-core-multilocus","owner":"ythaworn","description":null,"archived":false,"fork":false,"pushed_at":"2025-03-25T23:51:25.000Z","size":192,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-26T00:37:13.040Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ythaworn.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-03-24T12:41:23.000Z","updated_at":"2025-03-24T12:47:58.000Z","dependencies_parsed_at":"2025-03-26T00:47:36.054Z","dependency_job_id":null,"html_url":"https://github.com/ythaworn/nf-core-multilocus","commit_stats":null,"previous_names":["ythaworn/nf-core-multilocus"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ythaworn/nf-core-multilocus","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ythaworn","download_url":"https://codeload.github.com/ythaworn/nf-core-multilocus/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273747788,"owners_count":25160652,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ythaworn","name":"Yuttapong Thawornwattana","uuid":"12100045","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/12100045?v=4","repositories_count":2,"last_synced_at":"2023-03-12T05:21:19.217Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ythaworn","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-15T08:05:17.691Z","updated_at":"2023-03-12T05:21:19.251Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ythaworn","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ythaworn/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"ythaworn/nf-core-multilocus","html_url":"https://github.com/ythaworn/nf-core-multilocus","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T11:07:37.736Z","updated_at":"2025-09-05T11:07:37.736Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ythaworn%2Fnf-core-multilocus/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098796,"issues_count":31459450,"pull_requests_count":97364286,"authors_count":10701971,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":2,"CreateEvent":5},"last_year":{"PushEvent":2,"CreateEvent":5}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:26.606Z","updated_at":"2025-03-26T00:47:26.606Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":22421674641,"package_name":"octokit/request-action","ecosystem":"actions","requirements":"v2.x","direct":true,"kind":"composite","optional":false},{"id":22421676444,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22421677323,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:27.286Z","updated_at":"2025-03-26T00:47:27.286Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":22421677836,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22421677838,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:27.350Z","updated_at":"2025-03-26T00:47:27.350Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/branch.yml","dependencies":[{"id":22421678034,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:27.414Z","updated_at":"2025-03-26T00:47:27.414Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/ci.yml","dependencies":[{"id":22421678053,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22421678054,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22421680564,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":22421681076,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"a4260408e20b96e80095f42ff7f1a15b27dd94ca","direct":true,"kind":"composite","optional":false},{"id":22421681150,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:29.703Z","updated_at":"2025-03-26T00:47:29.703Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":22421682009,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:29.764Z","updated_at":"2025-03-26T00:47:29.764Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/download_pipeline.yml","dependencies":[{"id":22421682032,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22421682033,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":22421682034,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false},{"id":22421682035,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:29.825Z","updated_at":"2025-03-26T00:47:29.825Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":22421682043,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22421682044,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":22421682332,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:30.820Z","updated_at":"2025-03-26T00:47:30.820Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/linting.yml","dependencies":[{"id":22421682336,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22421682337,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false},{"id":22421682338,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22421682339,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"1.1.0","direct":true,"kind":"composite","optional":false},{"id":22421682917,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:31.505Z","updated_at":"2025-03-26T00:47:31.505Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":22421682920,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"20319c5641d495c8a52e688b7dc5fada6c3a9fbc","direct":true,"kind":"composite","optional":false},{"id":22421684075,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:33.909Z","updated_at":"2025-03-26T00:47:33.909Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/release-announcements.yml","dependencies":[{"id":22421684201,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22421684202,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:33.983Z","updated_at":"2025-03-26T00:47:33.983Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/.github/workflows/template_version_comment.yml","dependencies":[{"id":22421684208,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22421684209,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":22421684313,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.563Z","updated_at":"2025-03-26T00:47:35.563Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.615Z","updated_at":"2025-03-26T00:47:35.615Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.666Z","updated_at":"2025-03-26T00:47:35.666Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.718Z","updated_at":"2025-03-26T00:47:35.718Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.770Z","updated_at":"2025-03-26T00:47:35.770Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.822Z","updated_at":"2025-03-26T00:47:35.822Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-26T00:47:35.873Z","updated_at":"2025-03-26T00:47:35.873Z","repository_link":"https://github.com/ythaworn/nf-core-multilocus/blob/master/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:23.010Z","updated_at":"2025-10-07T08:18:50.968Z","avatar_url":"https://github.com/ythaworn.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/47452","html_url":"https://science.ecosyste.ms/projects/47452","bibtex_url":"https://science.ecosyste.ms/projects/47452/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/47452/export.apalike"}