{"id":48721,"name":"concatenationqc","description":null,"url":"https://github.com/ramirobarrantes/concatenationqc","last_synced_at":"2025-09-08T11:55:59.384Z","repository":{"id":244458952,"uuid":"815307942","full_name":"ramirobarrantes/concatenationQC","owner":"ramirobarrantes","description":null,"archived":false,"fork":false,"pushed_at":"2024-06-27T13:35:24.000Z","size":298,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-09-05T18:37:33.789Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ramirobarrantes.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-14T20:24:14.000Z","updated_at":"2024-06-27T13:33:55.000Z","dependencies_parsed_at":"2024-06-14T21:29:44.095Z","dependency_job_id":"2911ac40-8111-4fe9-93a7-678de4ea6967","html_url":"https://github.com/ramirobarrantes/concatenationQC","commit_stats":null,"previous_names":["ramirobarrantes/concatenationqc"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ramirobarrantes/concatenationQC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes","download_url":"https://codeload.github.com/ramirobarrantes/concatenationQC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274181570,"owners_count":25236549,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ramirobarrantes","name":"Ramiro","uuid":"15050055","kind":"user","description":"Statistician/bioinformatician working for academia and industry. A data scientist of genomes!","email":"","website":null,"location":null,"twitter":null,"company":"University of Vermont","icon_url":"https://avatars.githubusercontent.com/u/15050055?u=c14ec96aff05d8929aaac8eee5ef59eb5ea55ad1\u0026v=4","repositories_count":1,"last_synced_at":"2024-06-14T21:29:29.642Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ramirobarrantes","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-06-14T21:29:30.377Z","updated_at":"2024-06-14T21:29:30.377Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ramirobarrantes/repositories"},"packages":[],"commits":{"id":10943608,"full_name":"ramirobarrantes/concatenationqc","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-09-05T11:29:58.790Z","updated_at":"2025-09-05T11:29:58.790Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2Fconcatenationqc/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:16.827Z","repositories_count":5482481,"commits_count":853982201,"contributors_count":31119904,"owners_count":907868,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ramirobarrantes/concatenationQC","html_url":"https://github.com/ramirobarrantes/concatenationQC","last_synced_at":"2025-09-05T18:17:22.907Z","status":"active","issues_count":0,"pull_requests_count":8,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":49.0,"issues_closed_count":0,"pull_requests_closed_count":8,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":8,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-09-01T20:36:17.953Z","updated_at":"2025-09-05T18:17:22.908Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ramirobarrantes%2FconcatenationQC/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"OWNER":8},"issue_authors":{},"pull_request_authors":{"ramirobarrantes":8},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10164830,"issues_count":31988553,"pull_requests_count":100203706,"authors_count":10728625,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"ramirobarrantes","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ramirobarrantes"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:36.766Z","updated_at":"2024-06-14T21:29:36.766Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/awsfulltest.yml","dependencies":[{"id":18618609118,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18618609119,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:37.153Z","updated_at":"2024-06-14T21:29:37.153Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/awstest.yml","dependencies":[{"id":18618609220,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18618609221,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:37.433Z","updated_at":"2024-06-14T21:29:37.433Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/branch.yml","dependencies":[{"id":18618610505,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:37.783Z","updated_at":"2024-06-14T21:29:37.783Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/ci.yml","dependencies":[{"id":18618610837,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18618610838,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18618610839,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:38.119Z","updated_at":"2024-06-14T21:29:38.119Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/clean-up.yml","dependencies":[{"id":18618610858,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:38.375Z","updated_at":"2024-06-14T21:29:38.375Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/download_pipeline.yml","dependencies":[{"id":18618610859,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18618610860,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":18618610861,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18618610862,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:38.699Z","updated_at":"2024-06-14T21:29:38.699Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/fix-linting.yml","dependencies":[{"id":18618610863,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18618610864,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":18618610865,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:38.973Z","updated_at":"2024-06-14T21:29:38.973Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/linting.yml","dependencies":[{"id":18618610866,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":18618610867,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18618610868,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18618610869,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:39.341Z","updated_at":"2024-06-14T21:29:39.341Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/linting_comment.yml","dependencies":[{"id":18618610870,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":18618610871,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:39.650Z","updated_at":"2024-06-14T21:29:39.650Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/.github/workflows/release-announcements.yml","dependencies":[{"id":18618610872,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":18618610873,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":18618610874,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:40.255Z","updated_at":"2024-06-14T21:29:40.255Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:40.387Z","updated_at":"2024-06-14T21:29:40.387Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:40.907Z","updated_at":"2024-06-14T21:29:40.907Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:41.114Z","updated_at":"2024-06-14T21:29:41.114Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:41.345Z","updated_at":"2024-06-14T21:29:41.345Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:41.512Z","updated_at":"2024-06-14T21:29:41.512Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-06-14T21:29:41.709Z","updated_at":"2024-06-14T21:29:41.709Z","repository_link":"https://github.com/ramirobarrantes/concatenationQC/blob/master/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:24.298Z","updated_at":"2025-10-07T08:19:12.929Z","avatar_url":"https://github.com/ramirobarrantes.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/48721","html_url":"https://science.ecosyste.ms/projects/48721","bibtex_url":"https://science.ecosyste.ms/projects/48721/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/48721/export.apalike"}