{"id":48818,"name":"popgen_nf","description":"Nextflow pipeline for population genetics (in development)","url":"https://github.com/xinsun1/popgen_nf","last_synced_at":"2025-09-05T11:33:44.662Z","repository":{"id":208972573,"uuid":"709213592","full_name":"xinsun1/popgen_nf","owner":"xinsun1","description":"Nextflow pipeline for population genetics (in development)","archived":false,"fork":false,"pushed_at":"2023-12-13T16:16:43.000Z","size":2398,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2023-12-14T16:53:37.711Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/xinsun1.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2023-10-24T08:58:10.000Z","updated_at":"2023-11-24T08:12:57.000Z","dependencies_parsed_at":"2023-12-06T15:43:38.525Z","dependency_job_id":null,"html_url":"https://github.com/xinsun1/popgen_nf","commit_stats":null,"previous_names":["xinsun1/popgen_nf"],"tags_count":0,"template":null,"template_full_name":null,"purl":"pkg:github/xinsun1/popgen_nf","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/xinsun1","download_url":"https://codeload.github.com/xinsun1/popgen_nf/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273751377,"owners_count":25161545,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"xinsun1","name":"Xin Sun","uuid":"10096497","kind":"user","description":"Postdoc, Population genomics","email":"","website":null,"location":"Denmark","twitter":null,"company":"Center for Evolutionary Hologenomics, GLOBE Institute, University of Copenhagen","icon_url":"https://avatars.githubusercontent.com/u/10096497?v=4","repositories_count":3,"last_synced_at":"2023-06-13T10:25:37.356Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/xinsun1","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-06-13T10:25:37.361Z","updated_at":"2023-06-13T10:25:37.361Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/xinsun1","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/xinsun1/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"xinsun1/popgen_nf","html_url":"https://github.com/xinsun1/popgen_nf","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T11:33:07.865Z","updated_at":"2025-09-05T11:33:07.865Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/xinsun1%2Fpopgen_nf/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098650,"issues_count":31447165,"pull_requests_count":97330651,"authors_count":10702032,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:45.979Z","updated_at":"2023-11-30T14:27:45.979Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":14819993645,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14819993651,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.217Z","updated_at":"2023-11-30T14:27:46.217Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":14819993653,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14819993654,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.294Z","updated_at":"2023-11-30T14:27:46.294Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/branch.yml","dependencies":[{"id":14819993655,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.456Z","updated_at":"2023-11-30T14:27:46.456Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/ci.yml","dependencies":[{"id":14819993837,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14819993838,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.525Z","updated_at":"2023-11-30T14:27:46.525Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":14819993839,"package_name":"actions/stale","ecosystem":"actions","requirements":"v7","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.600Z","updated_at":"2023-11-30T14:27:46.600Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":14819993849,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14819993850,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.657Z","updated_at":"2023-11-30T14:27:46.657Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/linting.yml","dependencies":[{"id":14819993851,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14819993852,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14819993853,"package_name":"psf/black","ecosystem":"actions","requirements":"stable","direct":true,"kind":"composite","optional":false},{"id":14819993854,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":14819993855,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":14819993856,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14819993857,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.737Z","updated_at":"2023-11-30T14:27:46.737Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":14819993858,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14819993859,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcments.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.812Z","updated_at":"2023-11-30T14:27:46.812Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/.github/workflows/release-announcments.yml","dependencies":[{"id":14819993860,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":14819993861,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14819993862,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.936Z","updated_at":"2023-11-30T14:27:46.936Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:46.974Z","updated_at":"2023-11-30T14:27:46.974Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:47.046Z","updated_at":"2023-11-30T14:27:47.046Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-11-30T14:27:47.106Z","updated_at":"2023-11-30T14:27:47.106Z","repository_link":"https://github.com/xinsun1/popgen_nf/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:24.394Z","updated_at":"2025-10-07T08:19:14.703Z","avatar_url":"https://github.com/xinsun1.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/48818","html_url":"https://science.ecosyste.ms/projects/48818","bibtex_url":"https://science.ecosyste.ms/projects/48818/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/48818/export.apalike"}