{"id":50713,"name":"dl-prediction-brca-tiph","description":"Implementation of the paper \"Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology\" by Tiago Gonçalves, Dagoberto Pulido-Arias, Julian Willett, Katharina V. Hoebel, Mason Cleveland, Syed Rakin Ahmed, Elizabeth Gerstner, Jayashree Kalpathy-Cramer, Jaime S. Cardoso, Christopher P. Bridge and Albert E. Kim.","url":"https://github.com/qtim-lab/dl-prediction-brca-tiph","last_synced_at":"2025-09-05T12:07:29.886Z","repository":{"id":237631559,"uuid":"736073096","full_name":"QTIM-Lab/dl-prediction-brca-tiph","owner":"QTIM-Lab","description":"Implementation of the paper \"Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology\" by Tiago Gonçalves, Dagoberto Pulido-Arias, Julian Willett, Katharina V. Hoebel, Mason Cleveland, Syed Rakin Ahmed, Elizabeth Gerstner, Jayashree Kalpathy-Cramer, Jaime S. Cardoso, Christopher P. Bridge and Albert E. Kim.","archived":false,"fork":false,"pushed_at":"2025-03-12T16:52:50.000Z","size":16896,"stargazers_count":5,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-04-28T14:51:29.743Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/QTIM-Lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-12-26T23:06:37.000Z","updated_at":"2025-04-17T03:56:57.000Z","dependencies_parsed_at":null,"dependency_job_id":"31f02fa7-61b5-479f-978e-52626f58ae6a","html_url":"https://github.com/QTIM-Lab/dl-prediction-brca-tiph","commit_stats":null,"previous_names":["qtim-lab/dl-prediction-brca-tiph"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/QTIM-Lab/dl-prediction-brca-tiph","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/QTIM-Lab%2Fdl-prediction-brca-tiph","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/QTIM-Lab%2Fdl-prediction-brca-tiph/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/QTIM-Lab%2Fdl-prediction-brca-tiph/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/QTIM-Lab%2Fdl-prediction-brca-tiph/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/QTIM-Lab","download_url":"https://codeload.github.com/QTIM-Lab/dl-prediction-brca-tiph/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/QTIM-Lab%2Fdl-prediction-brca-tiph/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273754335,"owners_count":25161920,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"QTIM-Lab","name":"QTIM Lab","uuid":"22081557","kind":"organization","description":"The Quantitative Translational Imaging in Medicine Lab at the Martinos Center (MGH/HST)","email":"qtimlab@gmail.com","website":"https://www.martinos.org/lab/qtim","location":"Boston, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/22081557?v=4","repositories_count":88,"last_synced_at":"2024-03-15T10:51:02.111Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/QTIM-Lab","funding_links":[],"total_stars":259,"followers":null,"following":null,"created_at":"2022-11-08T18:50:28.657Z","updated_at":"2024-03-15T10:51:14.433Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/QTIM-Lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/QTIM-Lab/repositories"},"packages":[],"commits":{"id":6724485,"full_name":"qtim-lab/dl-prediction-brca-tiph","default_branch":"main","committers":[{"name":"TiagoFilipeSousaGoncalves","email":"tiago.galves@hotmail.com","login":"TiagoFilipeSousaGoncalves","count":277},{"name":"Tiago Filipe Sousa Goncalves","email":"tg020@bryce.nmr.mgh.harvard.edu","login":null,"count":12},{"name":"Tiago Filipe Sousa Goncalves","email":"tg020@glacier.nmr.mgh.harvard.edu","login":null,"count":3},{"name":"Dagoberto Pulido Arias","email":"dpulido@mgh.harvard.edu","login":"dagoPA","count":2}],"total_commits":294,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":73.5,"dds":0.05782312925170063,"past_year_committers":[{"name":"TiagoFilipeSousaGoncalves","email":"tiago.galves@hotmail.com","login":"TiagoFilipeSousaGoncalves","count":218},{"name":"Tiago Filipe Sousa Goncalves","email":"tg020@bryce.nmr.mgh.harvard.edu","login":null,"count":12},{"name":"Tiago Filipe Sousa Goncalves","email":"tg020@glacier.nmr.mgh.harvard.edu","login":null,"count":3},{"name":"Dagoberto Pulido Arias","email":"dpulido@mgh.harvard.edu","login":"dagoPA","count":2}],"past_year_total_commits":235,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":58.75,"past_year_dds":0.07234042553191489,"last_synced_at":"2025-04-29T10:14:04.927Z","last_synced_commit":"8df7faf2e69266b9828dc3fbf1d0a2cd57f006c5","created_at":"2024-11-24T01:54:09.486Z","updated_at":"2025-04-29T10:14:28.391Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/qtim-lab%2Fdl-prediction-brca-tiph/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"qtim-lab/dl-prediction-brca-tiph","html_url":"https://github.com/qtim-lab/dl-prediction-brca-tiph","last_synced_at":"2025-04-28T14:26:36.372Z","status":null,"issues_count":0,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":46.0,"issues_closed_count":0,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":46.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-11-24T01:54:10.080Z","updated_at":"2025-08-30T20:00:45.685Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qtim-lab%2Fdl-prediction-brca-tiph","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qtim-lab%2Fdl-prediction-brca-tiph/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"COLLABORATOR":2},"issue_authors":{},"pull_request_authors":{"TiagoFilipeSousaGoncalves":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098650,"issues_count":31447165,"pull_requests_count":97330651,"authors_count":10702032,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"COLLABORATOR":2},"past_year_issue_authors":{},"past_year_pull_request_authors":{"TiagoFilipeSousaGoncalves":2},"maintainers":[{"login":"TiagoFilipeSousaGoncalves","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/TiagoFilipeSousaGoncalves"}],"active_maintainers":[{"login":"TiagoFilipeSousaGoncalves","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/TiagoFilipeSousaGoncalves"}]},"events":{"total":{"WatchEvent":2,"PushEvent":1,"PullRequestEvent":1},"last_year":{"WatchEvent":2,"PushEvent":1,"PullRequestEvent":1}},"keywords":[],"dependencies":[],"score":2.995732273553991,"created_at":"2025-09-04T15:51:26.302Z","updated_at":"2025-10-07T08:19:52.317Z","avatar_url":"https://github.com/QTIM-Lab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/50713","html_url":"https://science.ecosyste.ms/projects/50713","bibtex_url":"https://science.ecosyste.ms/projects/50713/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/50713/export.apalike"}