{"id":5168,"name":"variantconsensus","description":null,"url":"https://github.com/qbic-pipelines/variantconsensus","last_synced_at":"2025-09-04T18:31:53.352Z","repository":{"id":287170531,"uuid":"963253202","full_name":"qbic-pipelines/variantconsensus","owner":"qbic-pipelines","description":null,"archived":false,"fork":false,"pushed_at":"2025-08-21T13:04:03.000Z","size":102,"stargazers_count":0,"open_issues_count":3,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-08-21T15:36:58.183Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/qbic-pipelines.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-04-09T11:52:11.000Z","updated_at":"2025-04-09T15:09:23.000Z","dependencies_parsed_at":"2025-04-10T10:52:07.010Z","dependency_job_id":"8644f99d-0bcc-46f5-9b86-14311b03be3c","html_url":"https://github.com/qbic-pipelines/variantconsensus","commit_stats":null,"previous_names":["qbic-pipelines/variantconsensus"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/qbic-pipelines/variantconsensus","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines","download_url":"https://codeload.github.com/qbic-pipelines/variantconsensus/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273653241,"owners_count":25144421,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"qbic-pipelines","name":"QBiC (qbic-pipelines)","uuid":"62887070","kind":"organization","description":"Bioinformatics analysis pipelines at QBiC","email":"support@qbic.zendesk.com","website":"https://qbic.life","location":"University of Tübingen","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/62887070?v=4","repositories_count":12,"last_synced_at":"2023-03-04T02:52:48.011Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/qbic-pipelines","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T08:34:03.510Z","updated_at":"2023-03-04T02:52:48.039Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qbic-pipelines/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"qbic-pipelines/variantconsensus","html_url":"https://github.com/qbic-pipelines/variantconsensus","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-29T14:49:23.366Z","updated_at":"2025-08-31T06:16:09.423Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qbic-pipelines%2Fvariantconsensus/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":9},"issue_authors":{"famosab":1},"pull_request_authors":{"famosab":9},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10081478,"issues_count":31331220,"pull_requests_count":96240505,"authors_count":10693617,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":9},"past_year_issue_authors":{"famosab":1},"past_year_pull_request_authors":{"famosab":9},"maintainers":[{"login":"famosab","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/famosab"}],"active_maintainers":[{"login":"famosab","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/famosab"}]},"events":{"total":{"IssuesEvent":2,"IssueCommentEvent":2,"PushEvent":9,"PublicEvent":1,"PullRequestReviewCommentEvent":18,"PullRequestReviewEvent":16,"PullRequestEvent":13,"ForkEvent":1},"last_year":{"IssuesEvent":2,"IssueCommentEvent":2,"PushEvent":9,"PublicEvent":1,"PullRequestReviewCommentEvent":18,"PullRequestReviewEvent":16,"PullRequestEvent":13,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:51:59.336Z","updated_at":"2025-04-10T10:51:59.336Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/branch.yml","dependencies":[{"id":22625729972,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:00.529Z","updated_at":"2025-04-10T10:52:00.529Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/ci.yml","dependencies":[{"id":22625730003,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22625730004,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22625731147,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":22625731287,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"a4260408e20b96e80095f42ff7f1a15b27dd94ca","direct":true,"kind":"composite","optional":false},{"id":22625731290,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:02.725Z","updated_at":"2025-04-10T10:52:02.725Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":22625731997,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:03.340Z","updated_at":"2025-04-10T10:52:03.340Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":22625732170,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22625732171,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":22625732172,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false},{"id":22625732173,"package_name":"eWaterCycle/setup-apptainer","ecosystem":"actions","requirements":"4bb22c52d4f63406c49e94c804632975787312b3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:03.472Z","updated_at":"2025-04-10T10:52:03.472Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":22625732178,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22625732179,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":22625732180,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:03.712Z","updated_at":"2025-04-10T10:52:03.712Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/linting.yml","dependencies":[{"id":22625732190,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22625732191,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0b93645e9fea7318ecaed2b359559ac225c90a2b","direct":true,"kind":"composite","optional":false},{"id":22625732192,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":22625732193,"package_name":"pietrobolcato/action-read-yaml","ecosystem":"actions","requirements":"1.1.0","direct":true,"kind":"composite","optional":false},{"id":22625732522,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:04.729Z","updated_at":"2025-04-10T10:52:04.729Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":22625732531,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"20319c5641d495c8a52e688b7dc5fada6c3a9fbc","direct":true,"kind":"composite","optional":false},{"id":22625732532,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/template_version_comment.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:05.249Z","updated_at":"2025-04-10T10:52:05.249Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/.github/workflows/template_version_comment.yml","dependencies":[{"id":22625732552,"package_name":"actions/checkout","ecosystem":"actions","requirements":"11bd71901bbe5b1630ceea73d27597364c9af683","direct":true,"kind":"composite","optional":false},{"id":22625732553,"package_name":"nichmor/minimal-read-yaml","ecosystem":"actions","requirements":"v0.0.2","direct":true,"kind":"composite","optional":false},{"id":22625732567,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:05.954Z","updated_at":"2025-04-10T10:52:05.954Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:06.188Z","updated_at":"2025-04-10T10:52:06.188Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:06.354Z","updated_at":"2025-04-10T10:52:06.354Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:06.429Z","updated_at":"2025-04-10T10:52:06.429Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-10T10:52:06.623Z","updated_at":"2025-04-10T10:52:06.623Z","repository_link":"https://github.com/qbic-pipelines/variantconsensus/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:50:14.390Z","updated_at":"2025-10-07T08:05:17.801Z","avatar_url":"https://github.com/qbic-pipelines.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/5168","html_url":"https://science.ecosyste.ms/projects/5168","bibtex_url":"https://science.ecosyste.ms/projects/5168/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/5168/export.apalike"}