{"id":5242,"name":"shrimpy","description":"shrimPy: Smart High-throughput Robust Imaging \u0026 Measurement in Python","url":"https://github.com/czbiohub-sf/shrimpy","last_synced_at":"2025-09-04T18:34:12.455Z","repository":{"id":213189468,"uuid":"509603889","full_name":"czbiohub-sf/shrimPy","owner":"czbiohub-sf","description":"shrimPy: Smart High-throughput Robust Imaging \u0026 Measurement in Python","archived":false,"fork":false,"pushed_at":"2025-08-29T21:15:38.000Z","size":1042,"stargazers_count":11,"open_issues_count":30,"forks_count":5,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-08-29T21:52:23.833Z","etag":null,"topics":["high-throughput-data-analysis","high-throughput-imaging","labelfree","lightsheet","multi-modal-imaging"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/czbiohub-sf.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-07-01T22:31:26.000Z","updated_at":"2025-07-31T22:23:38.000Z","dependencies_parsed_at":null,"dependency_job_id":"5710f9b6-dbb4-4b25-a4be-905d36cc9aa7","html_url":"https://github.com/czbiohub-sf/shrimPy","commit_stats":null,"previous_names":["czbiohub-sf/shrimpy"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/czbiohub-sf/shrimPy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/czbiohub-sf","download_url":"https://codeload.github.com/czbiohub-sf/shrimPy/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273654236,"owners_count":25144642,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"czbiohub-sf","name":"Chan Zuckerberg Biohub San Francisco","uuid":"28747162","kind":"organization","description":"","email":null,"website":"https://www.czbiohub.org/sf/","location":"San Francisco","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/28747162?v=4","repositories_count":1,"last_synced_at":"2023-06-12T17:52:45.067Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/czbiohub-sf","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T21:43:24.725Z","updated_at":"2023-06-12T17:52:45.079Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/czbiohub-sf","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/czbiohub-sf/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"czbiohub-sf/shrimPy","html_url":"https://github.com/czbiohub-sf/shrimPy","last_synced_at":"2025-09-02T23:14:06.854Z","status":null,"issues_count":33,"pull_requests_count":54,"avg_time_to_close_issue":19198817.611111112,"avg_time_to_close_pull_request":3913687.1,"issues_closed_count":18,"pull_requests_closed_count":40,"pull_request_authors_count":9,"issue_authors_count":7,"avg_comments_per_issue":0.7575757575757576,"avg_comments_per_pull_request":1.1481481481481481,"merged_pull_requests_count":29,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":12,"past_year_pull_requests_count":24,"past_year_avg_time_to_close_issue":574135.3333333334,"past_year_avg_time_to_close_pull_request":689605.6153846154,"past_year_issues_closed_count":3,"past_year_pull_requests_closed_count":13,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.25,"past_year_avg_comments_per_pull_request":0.375,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":11,"created_at":"2025-07-16T12:33:20.322Z","updated_at":"2025-09-03T04:05:22.292Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2FshrimPy/issues","issue_labels_count":{"enhancement":4,"bug":3,"analysis":2,"hardware":2,"documentation":1,"meta":1},"pull_request_labels_count":{"enhancement":2,"documentation":2,"bug":1,"analysis":1,"maintenance":1},"issue_author_associations_count":{"COLLABORATOR":21,"CONTRIBUTOR":9,"NONE":2},"pull_request_author_associations_count":{"COLLABORATOR":31,"CONTRIBUTOR":20,"NONE":4},"issue_authors":{"ieivanov":18,"edyoshikun":6,"jeskesen":4,"tayllatheodoro":1,"talonchandler":1,"ahillsley":1,"ziw-liu":1},"pull_request_authors":{"ieivanov":21,"edyoshikun":12,"jeskesen":10,"talonchandler":4,"tayllatheodoro":3,"ziw-liu":2,"picaq":1,"aaronalvarezcz":1,"ahillsley":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10081478,"issues_count":31331220,"pull_requests_count":96240505,"authors_count":10693617,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"maintenance":1},"past_year_issue_author_associations_count":{"COLLABORATOR":9,"NONE":2,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":20,"NONE":3,"CONTRIBUTOR":2},"past_year_issue_authors":{"ieivanov":6,"jeskesen":4,"ahillsley":1,"tayllatheodoro":1},"past_year_pull_request_authors":{"ieivanov":10,"jeskesen":10,"tayllatheodoro":3,"ahillsley":1,"picaq":1},"maintainers":[{"login":"ieivanov","count":39,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ieivanov"},{"login":"jeskesen","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jeskesen"}],"active_maintainers":[{"login":"ieivanov","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ieivanov"},{"login":"jeskesen","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jeskesen"}]},"events":{"total":{"CreateEvent":15,"IssuesEvent":16,"WatchEvent":3,"DeleteEvent":19,"MemberEvent":1,"IssueCommentEvent":38,"PushEvent":90,"PullRequestReviewEvent":35,"PullRequestReviewCommentEvent":33,"PullRequestEvent":35,"ForkEvent":3},"last_year":{"CreateEvent":15,"IssuesEvent":16,"WatchEvent":3,"DeleteEvent":19,"MemberEvent":1,"IssueCommentEvent":38,"PushEvent":90,"PullRequestReviewEvent":35,"PullRequestReviewCommentEvent":33,"PullRequestEvent":35,"ForkEvent":3}},"keywords":["high-throughput-data-analysis","high-throughput-imaging","labelfree","lightsheet","multi-modal-imaging"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:50:14.702Z","updated_at":"2025-10-07T08:05:19.063Z","avatar_url":"https://github.com/czbiohub-sf.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/pnasnexus/pgae323"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/5242","html_url":"https://science.ecosyste.ms/projects/5242","bibtex_url":"https://science.ecosyste.ms/projects/5242/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/5242/export.apalike"}