{"id":52759,"name":"custom-taxtriage-public-reupload","description":null,"url":"https://github.com/averagehat/custom-taxtriage-public-reupload","last_synced_at":"2025-09-05T12:52:13.770Z","repository":{"id":239231241,"uuid":"798941353","full_name":"averagehat/custom-taxtriage-public-reupload","owner":"averagehat","description":null,"archived":false,"fork":false,"pushed_at":"2024-05-14T07:59:24.000Z","size":6803,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-05-14T08:56:28.400Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/averagehat.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-10T20:04:27.000Z","updated_at":"2024-05-14T07:59:28.000Z","dependencies_parsed_at":"2024-05-14T08:54:48.508Z","dependency_job_id":null,"html_url":"https://github.com/averagehat/custom-taxtriage-public-reupload","commit_stats":null,"previous_names":["averagehat/custom-taxtriage-public-reupload"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/averagehat/custom-taxtriage-public-reupload","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/averagehat","download_url":"https://codeload.github.com/averagehat/custom-taxtriage-public-reupload/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273760586,"owners_count":25163177,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"averagehat","name":"Mike Panciera","uuid":"5606168","kind":"user","description":"","email":"","website":"averagehat.github.io","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/5606168?u=47106544e751a63f15dd4bd281c6951e9b8e6152\u0026v=4","repositories_count":115,"last_synced_at":"2023-08-04T12:16:20.969Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/averagehat","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T06:09:17.202Z","updated_at":"2023-08-04T12:16:21.211Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/averagehat","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/averagehat/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"averagehat/custom-taxtriage-public-reupload","html_url":"https://github.com/averagehat/custom-taxtriage-public-reupload","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T12:51:13.144Z","updated_at":"2025-09-05T12:51:13.144Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/averagehat%2Fcustom-taxtriage-public-reupload/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098650,"issues_count":31447165,"pull_requests_count":97330651,"authors_count":10702032,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:33.000Z","updated_at":"2024-05-14T08:54:33.000Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":18075347289,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:33.134Z","updated_at":"2024-05-14T08:54:33.134Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":18075347304,"package_name":"nf-core/tower-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:33.304Z","updated_at":"2024-05-14T08:54:33.304Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/branch.yml","dependencies":[{"id":18075347328,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:33.472Z","updated_at":"2024-05-14T08:54:33.472Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/ci.yml","dependencies":[{"id":18075347334,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:34.046Z","updated_at":"2024-05-14T08:54:34.046Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/linting.yml","dependencies":[{"id":18075347346,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18075347347,"package_name":"actions/setup-node","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18075347348,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":18075347349,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:34.178Z","updated_at":"2024-05-14T08:54:34.178Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":18075347383,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18075347384,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/artic/guppyplex/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:35.019Z","updated_at":"2024-05-14T08:54:35.019Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/artic/guppyplex/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/consensus/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:35.189Z","updated_at":"2024-05-14T08:54:35.189Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bcftools/consensus/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:35.292Z","updated_at":"2024-05-14T08:54:35.292Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bcftools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/mpileup/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:36.723Z","updated_at":"2024-05-14T08:54:36.723Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bcftools/mpileup/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bcftools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:38.480Z","updated_at":"2024-05-14T08:54:38.480Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bcftools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bedtools/coverage/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:38.656Z","updated_at":"2024-05-14T08:54:38.656Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bedtools/coverage/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/blast/blastn/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:38.778Z","updated_at":"2024-05-14T08:54:38.778Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/blast/blastn/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:38.865Z","updated_at":"2024-05-14T08:54:38.865Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bowtie2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bowtie2/build/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:38.983Z","updated_at":"2024-05-14T08:54:38.983Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bowtie2/build/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bwa/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.111Z","updated_at":"2024-05-14T08:54:39.111Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bwa/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/bwa/mem/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.246Z","updated_at":"2024-05-14T08:54:39.246Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bwa/mem/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/cat/cat/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.385Z","updated_at":"2024-05-14T08:54:39.385Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/cat/cat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/custom/dumpsoftwareversions/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.569Z","updated_at":"2024-05-14T08:54:39.569Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/custom/dumpsoftwareversions/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastp/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.725Z","updated_at":"2024-05-14T08:54:39.725Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/fastp/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:39.837Z","updated_at":"2024-05-14T08:54:39.837Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/flye/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:40.173Z","updated_at":"2024-05-14T08:54:40.173Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/flye/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/kraken2/kraken2/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:40.446Z","updated_at":"2024-05-14T08:54:40.446Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/kraken2/kraken2/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krakentools/combinekreports/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:40.584Z","updated_at":"2024-05-14T08:54:40.584Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krakentools/combinekreports/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krakentools/kreport2krona/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:40.795Z","updated_at":"2024-05-14T08:54:40.795Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krakentools/kreport2krona/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/kronadb/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:40.890Z","updated_at":"2024-05-14T08:54:40.890Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krona/kronadb/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/ktimporttaxonomy/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.007Z","updated_at":"2024-05-14T08:54:41.007Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krona/ktimporttaxonomy/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/ktimporttext/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.107Z","updated_at":"2024-05-14T08:54:41.107Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krona/ktimporttext/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/krona/ktupdatetaxonomy/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.174Z","updated_at":"2024-05-14T08:54:41.174Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/krona/ktupdatetaxonomy/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/minimap2/align/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.245Z","updated_at":"2024-05-14T08:54:41.245Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/minimap2/align/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/minimap2/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.313Z","updated_at":"2024-05-14T08:54:41.313Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/minimap2/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.415Z","updated_at":"2024-05-14T08:54:41.415Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/nanoplot/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.472Z","updated_at":"2024-05-14T08:54:41.472Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/nanoplot/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/ncbigenomedownload/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.531Z","updated_at":"2024-05-14T08:54:41.531Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/ncbigenomedownload/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pangolin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.603Z","updated_at":"2024-05-14T08:54:41.603Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/pangolin/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/porechop/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.660Z","updated_at":"2024-05-14T08:54:41.660Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/porechop/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/pycoqc/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.733Z","updated_at":"2024-05-14T08:54:41.733Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/pycoqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/rseqc/bamstat/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:41.819Z","updated_at":"2024-05-14T08:54:41.819Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/rseqc/bamstat/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/coverage/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:42.157Z","updated_at":"2024-05-14T08:54:42.157Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/coverage/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/depth/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:42.243Z","updated_at":"2024-05-14T08:54:42.243Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/depth/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/faidx/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:42.323Z","updated_at":"2024-05-14T08:54:42.323Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/faidx/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/fastq/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:42.950Z","updated_at":"2024-05-14T08:54:42.950Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/fastq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/index/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.014Z","updated_at":"2024-05-14T08:54:43.014Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/index/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/merge/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.122Z","updated_at":"2024-05-14T08:54:43.122Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/merge/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/sort/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.277Z","updated_at":"2024-05-14T08:54:43.277Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/sort/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/stats/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.357Z","updated_at":"2024-05-14T08:54:43.357Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/stats/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/samtools/view/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.434Z","updated_at":"2024-05-14T08:54:43.434Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/view/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/seqtk/sample/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.505Z","updated_at":"2024-05-14T08:54:43.505Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/seqtk/sample/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/seqtk/seq/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:43.586Z","updated_at":"2024-05-14T08:54:43.586Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/seqtk/seq/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/spades/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:46.724Z","updated_at":"2024-05-14T08:54:46.724Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/spades/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/trimgalore/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:47.713Z","updated_at":"2024-05-14T08:54:47.713Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/trimgalore/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/trimmomatic/meta.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:47.786Z","updated_at":"2024-05-14T08:54:47.786Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/trimmomatic/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/bedtools/coverage/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:47.845Z","updated_at":"2024-05-14T08:54:47.845Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/bedtools/coverage/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/ncbigenomedownload/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:47.919Z","updated_at":"2024-05-14T08:54:47.919Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/ncbigenomedownload/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/coverage/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:47.971Z","updated_at":"2024-05-14T08:54:47.971Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/coverage/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/samtools/sort/environment.yml","sha":null,"kind":"manifest","created_at":"2024-05-14T08:54:48.020Z","updated_at":"2024-05-14T08:54:48.020Z","repository_link":"https://github.com/averagehat/custom-taxtriage-public-reupload/blob/main/modules/nf-core/samtools/sort/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:28.405Z","updated_at":"2025-10-07T08:20:40.522Z","avatar_url":"https://github.com/averagehat.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/52759","html_url":"https://science.ecosyste.ms/projects/52759","bibtex_url":"https://science.ecosyste.ms/projects/52759/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/52759/export.apalike"}