{"id":53925,"name":"genome_sequence_similarity","description":"Nf-core nextflow implementation of genome relatedness determined using FastANI and Etoki bioinformatics tools","url":"https://github.com/smorrison42/genome_sequence_similarity","last_synced_at":"2025-09-08T12:07:51.017Z","repository":{"id":285579160,"uuid":"958621496","full_name":"SMorrison42/genome_sequence_similarity","owner":"SMorrison42","description":"Nf-core nextflow implementation of genome relatedness determined using FastANI and Etoki bioinformatics tools","archived":false,"fork":false,"pushed_at":"2025-04-01T15:40:44.000Z","size":167,"stargazers_count":0,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-05T20:38:16.332Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/SMorrison42.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-04-01T13:49:50.000Z","updated_at":"2025-04-01T17:04:16.000Z","dependencies_parsed_at":"2025-04-01T15:26:26.888Z","dependency_job_id":"3cb1e807-0076-4881-bd14-d6811f087726","html_url":"https://github.com/SMorrison42/genome_sequence_similarity","commit_stats":null,"previous_names":["smorrison42/genome_sequence_similarity"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/SMorrison42/genome_sequence_similarity","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SMorrison42%2Fgenome_sequence_similarity","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SMorrison42%2Fgenome_sequence_similarity/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SMorrison42%2Fgenome_sequence_similarity/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SMorrison42%2Fgenome_sequence_similarity/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SMorrison42","download_url":"https://codeload.github.com/SMorrison42/genome_sequence_similarity/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SMorrison42%2Fgenome_sequence_similarity/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274181740,"owners_count":25236552,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-08T02:00:09.813Z","response_time":121,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"SMorrison42","name":"Shatavia Morrison","uuid":"24682161","kind":"user","description":"CDC (work) and Personal Coding Projects","email":"","website":null,"location":"Atlanta, GA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/24682161?u=c8368dc076b7d14349de8a25fb87761c5aaa178a\u0026v=4","repositories_count":1,"last_synced_at":"2023-05-25T02:35:54.594Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/SMorrison42","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-05-25T02:35:54.596Z","updated_at":"2023-05-25T02:35:54.596Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SMorrison42","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/SMorrison42/repositories"},"packages":[],"commits":{"id":9471489,"full_name":"smorrison42/genome_sequence_similarity","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-04-02T18:18:12.239Z","updated_at":"2025-04-02T18:18:12.239Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/smorrison42%2Fgenome_sequence_similarity/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"smorrison42/genome_sequence_similarity","html_url":"https://github.com/smorrison42/genome_sequence_similarity","last_synced_at":"2025-06-08T21:04:34.125Z","status":null,"issues_count":0,"pull_requests_count":1,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":0,"pull_requests_closed_count":0,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-02T18:18:12.451Z","updated_at":"2025-08-30T23:09:42.956Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smorrison42%2Fgenome_sequence_similarity","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/smorrison42%2Fgenome_sequence_similarity/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"COLLABORATOR":2},"issue_authors":{},"pull_request_authors":{"aginnimb":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10065497,"issues_count":31124289,"pull_requests_count":94727574,"authors_count":10687451,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"COLLABORATOR":2},"past_year_issue_authors":{},"past_year_pull_request_authors":{"aginnimb":2},"maintainers":[{"login":"aginnimb","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/aginnimb"}],"active_maintainers":[{"login":"aginnimb","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/aginnimb"}]},"events":{"total":{"MemberEvent":1,"PushEvent":9,"PullRequestEvent":1,"ForkEvent":1},"last_year":{"MemberEvent":1,"PushEvent":9,"PullRequestEvent":1,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/nf-core/fastani/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.336Z","updated_at":"2025-04-01T15:26:26.336Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/fastani/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/fastqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.376Z","updated_at":"2025-04-01T15:26:26.376Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/fastqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"modules/nf-core/multiqc/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.417Z","updated_at":"2025-04-01T15:26:26.417Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/multiqc/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.458Z","updated_at":"2025-04-01T15:26:26.458Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.499Z","updated_at":"2025-04-01T15:26:26.499Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.540Z","updated_at":"2025-04-01T15:26:26.540Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastani/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.581Z","updated_at":"2025-04-01T15:26:26.581Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/fastani/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/fastqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.623Z","updated_at":"2025-04-01T15:26:26.623Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/fastqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/multiqc/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.664Z","updated_at":"2025-04-01T15:26:26.664Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/modules/nf-core/multiqc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-04-01T15:26:26.707Z","updated_at":"2025-04-01T15:26:26.707Z","repository_link":"https://github.com/SMorrison42/genome_sequence_similarity/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:29.592Z","updated_at":"2025-10-07T08:21:13.103Z","avatar_url":"https://github.com/SMorrison42.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/53925","html_url":"https://science.ecosyste.ms/projects/53925","bibtex_url":"https://science.ecosyste.ms/projects/53925/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/53925/export.apalike"}