{"id":54671,"name":"cnr-flow","description":"CUT\u0026RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT\u0026RUN experiments.","url":"https://github.com/rennelab/cnr-flow","last_synced_at":"2025-09-05T13:34:22.004Z","repository":{"id":180231475,"uuid":"290207620","full_name":"RenneLab/CnR-flow","owner":"RenneLab","description":"CUT\u0026RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT\u0026RUN experiments.","archived":false,"fork":false,"pushed_at":"2022-04-05T19:07:09.000Z","size":24799,"stargazers_count":5,"open_issues_count":0,"forks_count":4,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-06-01T01:10:10.227Z","etag":null,"topics":["chip-seq-pipelines","cutandrun","cutandrun-seq","cutrun","genomics","nextflow","peak-calling"],"latest_commit_sha":null,"homepage":"","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/RenneLab.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"Citations.bib","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-08-25T12:21:30.000Z","updated_at":"2023-11-27T03:57:07.000Z","dependencies_parsed_at":null,"dependency_job_id":"919d1f40-c26a-4074-89b6-57d4e3617612","html_url":"https://github.com/RenneLab/CnR-flow","commit_stats":null,"previous_names":["rennelab/cnr-flow"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/RenneLab/CnR-flow","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RenneLab%2FCnR-flow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RenneLab%2FCnR-flow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RenneLab%2FCnR-flow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RenneLab%2FCnR-flow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RenneLab","download_url":"https://codeload.github.com/RenneLab/CnR-flow/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RenneLab%2FCnR-flow/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273766031,"owners_count":25164255,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"RenneLab","name":"Renne Lab","uuid":"34487862","kind":"organization","description":null,"email":null,"website":"https://www.rennelab.com/","location":"Gainesville, FL","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/34487862?v=4","repositories_count":2,"last_synced_at":"2023-07-10T21:20:22.203Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/RenneLab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-07-10T21:20:17.670Z","updated_at":"2023-07-10T21:20:22.212Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RenneLab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RenneLab/repositories"},"packages":[],"commits":{"id":4521692,"full_name":"rennelab/cnr-flow","default_branch":"master","committers":[{"name":"Dan Stribling","email":"ds@ufl.edu","login":"dstrib","count":227}],"total_commits":227,"total_committers":1,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":227.0,"dds":0.0,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-05-31T14:18:40.736Z","last_synced_commit":"a4620f54d86a1e6bbdee0823251f1f70e78e9eb0","created_at":"2024-11-08T09:23:37.487Z","updated_at":"2025-05-31T14:18:40.737Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/rennelab%2Fcnr-flow/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"rennelab/cnr-flow","html_url":"https://github.com/rennelab/cnr-flow","last_synced_at":"2025-02-20T18:41:00.481Z","status":null,"issues_count":6,"pull_requests_count":0,"avg_time_to_close_issue":7243586.333333333,"avg_time_to_close_pull_request":null,"issues_closed_count":6,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":4,"avg_comments_per_issue":5.5,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-08T09:23:39.302Z","updated_at":"2025-02-20T18:41:00.482Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rennelab%2Fcnr-flow","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rennelab%2Fcnr-flow/issues","issue_labels_count":{"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":6},"pull_request_author_associations_count":{},"issue_authors":{"mhriris":2,"EllieDuan":2,"zakiF":1,"Xinming-W":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-28T00:00:20.451Z","repositories_count":8341616,"issues_count":15640449,"pull_requests_count":37241097,"authors_count":5664792,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["chip-seq-pipelines","cutandrun","cutandrun-seq","cutrun","genomics","nextflow","peak-calling"],"dependencies":[],"score":1.6094379124341003,"created_at":"2025-09-04T15:51:30.356Z","updated_at":"2025-10-07T08:21:33.952Z","avatar_url":"https://github.com/RenneLab.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.4015698"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/54671","html_url":"https://science.ecosyste.ms/projects/54671","bibtex_url":"https://science.ecosyste.ms/projects/54671/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/54671/export.apalike"}