{"id":55,"name":"CoperniFUS","description":"CoperniFUS: A flexible Python-based GUI for stereotaxic Focused UltraSound (FUS) experiment planning - Published in JOSS (2025)","url":"https://github.com/tomaubier/copernifus","last_synced_at":"2025-09-04T15:55:19.936Z","repository":{"id":276322928,"uuid":"918096716","full_name":"Tomaubier/CoperniFUS","owner":"Tomaubier","description":"A flexible Python-based GUI for stereotaxic experiment planning.","archived":false,"fork":false,"pushed_at":"2025-07-11T13:56:05.000Z","size":120335,"stargazers_count":7,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-04T09:42:10.414Z","etag":null,"topics":["neuroscience-experiments","neurostimulation","ultrasound"],"latest_commit_sha":null,"homepage":"https://copernifus.readthedocs.io/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Tomaubier.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2025-01-17T08:43:08.000Z","updated_at":"2025-07-11T13:56:09.000Z","dependencies_parsed_at":"2025-09-04T09:38:57.798Z","dependency_job_id":null,"html_url":"https://github.com/Tomaubier/CoperniFUS","commit_stats":null,"previous_names":["tomaubier/copernifus"],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Tomaubier/CoperniFUS","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Tomaubier","download_url":"https://codeload.github.com/Tomaubier/CoperniFUS/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273619609,"owners_count":25138238,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Tomaubier","name":"Tom Aubier","uuid":"17113619","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/17113619?u=6efa0a6de0b4d5ca783a48250ec3a29c2a917fcd\u0026v=4","repositories_count":1,"last_synced_at":"2023-03-05T10:49:56.589Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Tomaubier","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T13:56:42.382Z","updated_at":"2023-03-05T10:49:56.606Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Tomaubier","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Tomaubier/repositories"},"packages":[],"commits":{"id":10896079,"full_name":"tomaubier/copernifus","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-09-04T09:28:14.031Z","updated_at":"2025-09-04T09:28:14.031Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/tomaubier%2Fcopernifus/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Tomaubier/CoperniFUS","html_url":"https://github.com/Tomaubier/CoperniFUS","last_synced_at":"2025-09-04T13:59:43.032Z","status":"active","issues_count":15,"pull_requests_count":0,"avg_time_to_close_issue":727042.2142857143,"avg_time_to_close_pull_request":null,"issues_closed_count":14,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":6,"avg_comments_per_issue":2.4,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":15,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":727042.2142857143,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":14,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":6,"past_year_avg_comments_per_issue":2.4,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-08-29T14:10:07.012Z","updated_at":"2025-09-04T13:59:43.032Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Tomaubier%2FCoperniFUS/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":8,"NONE":7},"pull_request_author_associations_count":{},"issue_authors":{"Tomaubier":8,"Julie-Fabre":3,"iiotkanyu":1,"richardkoehler":1,"adamltyson":1,"plooney":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10080233,"issues_count":31311624,"pull_requests_count":96148338,"authors_count":10693059,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":8,"NONE":7},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"Tomaubier":8,"Julie-Fabre":3,"adamltyson":1,"iiotkanyu":1,"plooney":1,"richardkoehler":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"Tomaubier","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Tomaubier"}],"active_maintainers":[{"login":"Tomaubier","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Tomaubier"}]},"events":{"total":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":18,"WatchEvent":7,"IssueCommentEvent":23,"PublicEvent":1,"PushEvent":63,"ForkEvent":2},"last_year":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":18,"WatchEvent":7,"IssueCommentEvent":23,"PublicEvent":1,"PushEvent":63,"ForkEvent":2}},"keywords":["neuroscience-experiments","neurostimulation","ultrasound"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/python-app.yml","sha":null,"kind":"manifest","created_at":"2025-02-07T15:32:18.900Z","updated_at":"2025-02-07T15:32:18.900Z","repository_link":"https://github.com/Tomaubier/CoperniFUS/blob/main/.github/workflows/python-app.yml","dependencies":[{"id":21781662087,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":21781662088,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2025-02-07T15:32:18.983Z","updated_at":"2025-02-07T15:32:18.983Z","repository_link":"https://github.com/Tomaubier/CoperniFUS/blob/main/docs/requirements.txt","dependencies":[{"id":21781662089,"package_name":"sphinx","ecosystem":"pypi","requirements":"==8.1.3","direct":true,"kind":"runtime","optional":false},{"id":21781662090,"package_name":"furo","ecosystem":"pypi","requirements":"==2024.8.6","direct":true,"kind":"runtime","optional":false},{"id":21781662091,"package_name":"nbsphinx","ecosystem":"pypi","requirements":"==0.9.6","direct":true,"kind":"runtime","optional":false},{"id":21781662092,"package_name":"nbconvert","ecosystem":"pypi","requirements":"==7.16.6","direct":true,"kind":"runtime","optional":false},{"id":21781662093,"package_name":"sphinx-autodoc-typehints","ecosystem":"pypi","requirements":"==3.0.1","direct":true,"kind":"runtime","optional":false},{"id":21781662094,"package_name":"sphinx_mdinclude","ecosystem":"pypi","requirements":"==0.6.2","direct":true,"kind":"runtime","optional":false},{"id":21781664164,"package_name":"directory_tree","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-02-07T15:32:20.027Z","updated_at":"2025-02-07T15:32:20.027Z","repository_link":"https://github.com/Tomaubier/CoperniFUS/blob/main/pyproject.toml","dependencies":[{"id":21781664223,"package_name":"PyQt6","ecosystem":"pypi","requirements":"==6.7.0","direct":true,"kind":"runtime","optional":false},{"id":21781665501,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.26.4","direct":true,"kind":"runtime","optional":false},{"id":21781665502,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.13.1","direct":true,"kind":"runtime","optional":false},{"id":21781665503,"package_name":"pyqtgraph","ecosystem":"pypi","requirements":"==0.13.7","direct":true,"kind":"runtime","optional":false},{"id":21781667007,"package_name":"bg_atlasapi","ecosystem":"pypi","requirements":"==1.0.3","direct":true,"kind":"runtime","optional":false},{"id":21781669654,"package_name":"brainglobe_atlasapi","ecosystem":"pypi","requirements":"==2.0.7","direct":true,"kind":"runtime","optional":false},{"id":21781670496,"package_name":"scikit-spatial","ecosystem":"pypi","requirements":"==7.2.0","direct":true,"kind":"runtime","optional":false},{"id":21781671303,"package_name":"si-prefix","ecosystem":"pypi","requirements":"==1.3.3","direct":true,"kind":"runtime","optional":false},{"id":21781673925,"package_name":"numpy-stl","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":21781677417,"package_name":"trimesh","ecosystem":"pypi","requirements":"==4.0.1","direct":true,"kind":"runtime","optional":false},{"id":21781677418,"package_name":"shapely","ecosystem":"pypi","requirements":"==2.0.5","direct":true,"kind":"runtime","optional":false},{"id":21781677419,"package_name":"rtree","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":21781677420,"package_name":"mapbox_earcut","ecosystem":"pypi","requirements":"==1.0.1","direct":true,"kind":"runtime","optional":false},{"id":21781678416,"package_name":"zarr","ecosystem":"pypi","requirements":"==2.18.3","direct":true,"kind":"runtime","optional":false},{"id":21781678417,"package_name":"pillow","ecosystem":"pypi","requirements":"==10.3.0","direct":true,"kind":"runtime","optional":false},{"id":21781678418,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.66.4","direct":true,"kind":"runtime","optional":false},{"id":21781678419,"package_name":"dask","ecosystem":"pypi","requirements":"==2024.5.2","direct":true,"kind":"runtime","optional":false},{"id":21781678420,"package_name":"rembg","ecosystem":"pypi","requirements":"==2.0.59","direct":true,"kind":"runtime","optional":false},{"id":21781678421,"package_name":"opencv-python","ecosystem":"pypi","requirements":"==4.10.0.84","direct":true,"kind":"runtime","optional":false},{"id":21781678422,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.9.0","direct":true,"kind":"runtime","optional":false},{"id":21781678423,"package_name":"napari","ecosystem":"pypi","requirements":"==0.5.4","direct":true,"kind":"runtime","optional":false},{"id":21781679180,"package_name":"onnxruntime","ecosystem":"pypi","requirements":"==1.19.2","direct":true,"kind":"runtime","optional":false},{"id":21781679181,"package_name":"k-Wave-python","ecosystem":"pypi","requirements":"==0.3.4","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/draft-pdf.yml","sha":null,"kind":"manifest","created_at":"2025-03-19T14:37:38.793Z","updated_at":"2025-03-19T14:37:38.793Z","repository_link":"https://github.com/Tomaubier/CoperniFUS/blob/main/.github/workflows/draft-pdf.yml","dependencies":[{"id":22332004619,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":22332004620,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":22332004653,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2025-06-05T10:35:32.277Z","updated_at":"2025-06-05T10:35:32.277Z","repository_link":"https://github.com/Tomaubier/CoperniFUS/blob/main/requirements.txt","dependencies":[{"id":23469101020,"package_name":"PyQt6","ecosystem":"pypi","requirements":"==6.7.0","direct":true,"kind":"runtime","optional":false},{"id":23469101032,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.26.4","direct":true,"kind":"runtime","optional":false},{"id":23469101036,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.14.1","direct":true,"kind":"runtime","optional":false},{"id":23469101066,"package_name":"networkx","ecosystem":"pypi","requirements":"==3.5","direct":true,"kind":"runtime","optional":false},{"id":23469101071,"package_name":"pyqtgraph","ecosystem":"pypi","requirements":"==0.13.7","direct":true,"kind":"runtime","optional":false},{"id":23469101076,"package_name":"brainglobe_atlasapi","ecosystem":"pypi","requirements":"==2.0.7","direct":true,"kind":"runtime","optional":false},{"id":23469101388,"package_name":"scikit-spatial","ecosystem":"pypi","requirements":"==7.2.0","direct":true,"kind":"runtime","optional":false},{"id":23469101717,"package_name":"si-prefix","ecosystem":"pypi","requirements":"==1.3.3","direct":true,"kind":"runtime","optional":false},{"id":23469101731,"package_name":"numpy-stl","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":23469101732,"package_name":"shapely","ecosystem":"pypi","requirements":"==2.1.1","direct":true,"kind":"runtime","optional":false},{"id":23469101733,"package_name":"rtree","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":23469101734,"package_name":"mapbox_earcut","ecosystem":"pypi","requirements":"==1.0.1","direct":true,"kind":"runtime","optional":false},{"id":23469101768,"package_name":"zarr","ecosystem":"pypi","requirements":"==2.18.3","direct":true,"kind":"runtime","optional":false},{"id":23469101769,"package_name":"pillow","ecosystem":"pypi","requirements":"==10.3.0","direct":true,"kind":"runtime","optional":false},{"id":23469101770,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.66.4","direct":true,"kind":"runtime","optional":false},{"id":23469101771,"package_name":"dask","ecosystem":"pypi","requirements":"==2025.3.0","direct":true,"kind":"runtime","optional":false},{"id":23469101772,"package_name":"rembg","ecosystem":"pypi","requirements":"==2.0.59","direct":true,"kind":"runtime","optional":false},{"id":23469101773,"package_name":"opencv-python","ecosystem":"pypi","requirements":"==4.10.0.84","direct":true,"kind":"runtime","optional":false},{"id":23469101774,"package_name":"pymeshfix","ecosystem":"pypi","requirements":"==0.17.1","direct":true,"kind":"runtime","optional":false},{"id":23469101776,"package_name":"manifold3d","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":23469101777,"package_name":"trimesh","ecosystem":"pypi","requirements":"==4.6.10","direct":true,"kind":"runtime","optional":false},{"id":23469101778,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.10.0","direct":true,"kind":"runtime","optional":false},{"id":23469101779,"package_name":"napari","ecosystem":"pypi","requirements":"==0.6.1","direct":true,"kind":"runtime","optional":false},{"id":23469101796,"package_name":"onnxruntime","ecosystem":"pypi","requirements":"==1.19.2","direct":true,"kind":"runtime","optional":false},{"id":23469101797,"package_name":"k-Wave-python","ecosystem":"pypi","requirements":"==0.4.0","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T09:17:29.339Z","updated_at":"2025-10-07T08:04:22.644Z","avatar_url":"https://github.com/Tomaubier.png","language":"Jupyter Notebook","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/55","html_url":"https://science.ecosyste.ms/projects/55"}