{"id":55197,"name":"nf-crispr-primer-design","description":"Nextflow pipeline for primer design for sequencing CRISPR target sites","url":"https://github.com/pfizer-opensource/nf-crispr-primer-design","last_synced_at":"2025-09-05T13:47:52.720Z","repository":{"id":291125588,"uuid":"974545978","full_name":"pfizer-opensource/nf-crispr-primer-design","owner":"pfizer-opensource","description":"Nextflow pipeline for primer design for sequencing CRISPR target sites","archived":false,"fork":false,"pushed_at":"2025-05-02T14:32:23.000Z","size":97,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-05-02T15:42:34.917Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/pfizer-opensource.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-04-29T00:20:27.000Z","updated_at":"2025-05-02T14:41:42.000Z","dependencies_parsed_at":"2025-05-02T15:54:20.328Z","dependency_job_id":null,"html_url":"https://github.com/pfizer-opensource/nf-crispr-primer-design","commit_stats":null,"previous_names":["pfizer-opensource/nf-crispr-primer-design"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/pfizer-opensource/nf-crispr-primer-design","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pfizer-opensource","download_url":"https://codeload.github.com/pfizer-opensource/nf-crispr-primer-design/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273767517,"owners_count":25164461,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"pfizer-opensource","name":"Pfizer Open Source","uuid":"83447221","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/83447221?v=4","repositories_count":3,"last_synced_at":"2023-03-10T14:37:06.456Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/pfizer-opensource","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-14T18:20:47.557Z","updated_at":"2023-03-10T14:37:06.465Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pfizer-opensource","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/pfizer-opensource/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"pfizer-opensource/nf-crispr-primer-design","html_url":"https://github.com/pfizer-opensource/nf-crispr-primer-design","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T03:40:48.589Z","updated_at":"2025-08-31T03:40:48.589Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pfizer-opensource%2Fnf-crispr-primer-design/issues","issue_labels_count":{"policy:github.repository_identification":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"pfizer-electron-app[bot]":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10100117,"issues_count":31473266,"pull_requests_count":97445500,"authors_count":10702683,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"policy:github.repository_identification":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"pfizer-electron-app[bot]":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"WatchEvent":1,"PushEvent":1,"CreateEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":1,"PushEvent":1,"CreateEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cpan","filepath":"modules/nf-core/bedops/gtf2bed/meta.yml","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.093Z","updated_at":"2025-05-02T15:54:18.093Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/modules/nf-core/bedops/gtf2bed/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.144Z","updated_at":"2025-05-02T15:54:18.144Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.193Z","updated_at":"2025-05-02T15:54:18.193Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfschema_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.240Z","updated_at":"2025-05-02T15:54:18.240Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/subworkflows/nf-core/utils_nfschema_plugin/meta.yml","dependencies":[]},{"ecosystem":"docker","filepath":"images/Dockerfile","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.290Z","updated_at":"2025-05-02T15:54:18.290Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/images/Dockerfile","dependencies":[{"id":22954066986,"package_name":"alpine","ecosystem":"docker","requirements":"3.15","direct":true,"kind":"build","optional":false},{"id":22954066990,"package_name":"build-base","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"images/crispr-primer-design/setup.py","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:18.360Z","updated_at":"2025-05-02T15:54:18.360Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/images/crispr-primer-design/setup.py","dependencies":[{"id":22954067788,"package_name":"pyyaml","ecosystem":"pypi","requirements":"\u003e=5.1.2","direct":true,"kind":"runtime","optional":false},{"id":22954067789,"package_name":"confuse","ecosystem":"pypi","requirements":"\u003e=1.7.0,\u003c2","direct":true,"kind":"runtime","optional":false},{"id":22954070677,"package_name":"primer3-py","ecosystem":"pypi","requirements":"\u003e=0.6.1,\u003c1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"images/crispr-primer-design/src/crispr_primer_design.egg-info/requires.txt","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:20.133Z","updated_at":"2025-05-02T15:54:20.133Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/images/crispr-primer-design/src/crispr_primer_design.egg-info/requires.txt","dependencies":[{"id":22954074342,"package_name":"pyyaml","ecosystem":"pypi","requirements":"\u003e=5.1.2","direct":true,"kind":"runtime","optional":false},{"id":22954074343,"package_name":"confuse","ecosystem":"pypi","requirements":"\u003c2,\u003e=1.7.0","direct":true,"kind":"runtime","optional":false},{"id":22954074344,"package_name":"primer3-py","ecosystem":"pypi","requirements":"\u003e=0.6.1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"modules/nf-core/bedops/gtf2bed/environment.yml","sha":null,"kind":"manifest","created_at":"2025-05-02T15:54:20.212Z","updated_at":"2025-05-02T15:54:20.212Z","repository_link":"https://github.com/pfizer-opensource/nf-crispr-primer-design/blob/main/modules/nf-core/bedops/gtf2bed/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:30.973Z","updated_at":"2025-10-07T08:21:48.141Z","avatar_url":"https://github.com/pfizer-opensource.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/55197","html_url":"https://science.ecosyste.ms/projects/55197","bibtex_url":"https://science.ecosyste.ms/projects/55197/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/55197/export.apalike"}