{"id":55550,"name":"ml4bio-workshop","description":"Materials for a workshop introducing machine learning to biologists","url":"https://github.com/carpentries-incubator/ml4bio-workshop","last_synced_at":"2025-09-05T13:57:02.561Z","repository":{"id":54311728,"uuid":"135501419","full_name":"carpentries-incubator/ml4bio-workshop","owner":"carpentries-incubator","description":"Materials for a workshop introducing machine learning to biologists","archived":false,"fork":false,"pushed_at":"2025-03-20T20:36:11.000Z","size":97017,"stargazers_count":23,"open_issues_count":64,"forks_count":9,"subscribers_count":11,"default_branch":"gh-pages","last_synced_at":"2025-09-02T02:42:39.679Z","etag":null,"topics":["alpha","carpentries-incubator","education","english","lesson","machine-learning"],"latest_commit_sha":null,"homepage":"https://carpentries-incubator.github.io/ml4bio-workshop/","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/carpentries-incubator.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null},"funding":{"github":["carpentries"],"custom":["https://give.communityin.org/TheCarpentries"]}},"created_at":"2018-05-30T21:54:55.000Z","updated_at":"2025-06-22T07:09:32.000Z","dependencies_parsed_at":"2025-09-02T02:44:50.370Z","dependency_job_id":null,"html_url":"https://github.com/carpentries-incubator/ml4bio-workshop","commit_stats":null,"previous_names":[],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/carpentries-incubator/ml4bio-workshop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/carpentries-incubator","download_url":"https://codeload.github.com/carpentries-incubator/ml4bio-workshop/tar.gz/refs/heads/gh-pages","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273768157,"owners_count":25164464,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"carpentries-incubator","name":"carpentries-incubator","uuid":"53264631","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/53264631?v=4","repositories_count":107,"last_synced_at":"2023-02-27T03:40:27.694Z","metadata":{"has_sponsors_listing":false,"funding":{"github":["carpentries"],"custom":["https://give.communityin.org/TheCarpentries"]}},"html_url":"https://github.com/carpentries-incubator","funding_links":["https://github.com/sponsors/carpentries","https://give.communityin.org/TheCarpentries"],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-10T13:05:59.233Z","updated_at":"2023-02-27T03:40:27.711Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/carpentries-incubator","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/carpentries-incubator/repositories"},"packages":[],"commits":{"id":8043241,"full_name":"carpentries-incubator/ml4bio-workshop","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-12-29T12:56:11.957Z","updated_at":"2024-12-29T12:56:11.957Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"carpentries-incubator/ml4bio-workshop","html_url":"https://github.com/carpentries-incubator/ml4bio-workshop","last_synced_at":"2025-08-31T11:52:18.339Z","status":null,"issues_count":78,"pull_requests_count":27,"avg_time_to_close_issue":25236117.514285713,"avg_time_to_close_pull_request":7828462.555555556,"issues_closed_count":35,"pull_requests_closed_count":27,"pull_request_authors_count":4,"issue_authors_count":6,"avg_comments_per_issue":2.5128205128205128,"avg_comments_per_pull_request":0.9259259259259259,"merged_pull_requests_count":22,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-12-29T12:56:20.196Z","updated_at":"2025-09-02T21:01:00.740Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/carpentries-incubator%2Fml4bio-workshop/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":77,"MEMBER":1,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"COLLABORATOR":25,"CONTRIBUTOR":2,"NONE":1},"issue_authors":{"agitter":71,"fmu2":2,"cmilica":2,"csmagnano":2,"xiaohk":1,"tobyhodges":1},"pull_request_authors":{"agitter":13,"cmilica":9,"csmagnano":3,"xiaohk":2,"kassabry":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10100117,"issues_count":31473266,"pull_requests_count":97445500,"authors_count":10702683,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":3,"MEMBER":1},"past_year_pull_request_author_associations_count":{"NONE":1},"past_year_issue_authors":{"agitter":3,"tobyhodges":1},"past_year_pull_request_authors":{"kassabry":1},"maintainers":[{"login":"agitter","count":84,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/agitter"},{"login":"cmilica","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmilica"},{"login":"csmagnano","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/csmagnano"},{"login":"fmu2","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/fmu2"},{"login":"tobyhodges","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tobyhodges"}],"active_maintainers":[{"login":"agitter","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/agitter"},{"login":"tobyhodges","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tobyhodges"}]},"events":{"total":{"CreateEvent":2,"ReleaseEvent":2,"IssuesEvent":5,"WatchEvent":2,"IssueCommentEvent":3,"PushEvent":8,"PullRequestReviewEvent":1,"PullRequestEvent":3,"ForkEvent":2},"last_year":{"CreateEvent":2,"ReleaseEvent":2,"IssuesEvent":5,"WatchEvent":2,"IssueCommentEvent":3,"PushEvent":8,"PullRequestReviewEvent":1,"PullRequestEvent":3,"ForkEvent":2}},"keywords":["alpha","carpentries-incubator","education","english","lesson","machine-learning"],"dependencies":[{"ecosystem":"pypi","filepath":"binder/environment.yml","sha":null,"kind":"manifest","created_at":"2025-09-02T02:44:49.813Z","updated_at":"2025-09-02T02:44:49.813Z","repository_link":"https://github.com/carpentries-incubator/ml4bio-workshop/blob/gh-pages/binder/environment.yml","dependencies":[{"id":24953323077,"package_name":"ml4bio","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:51:31.445Z","updated_at":"2025-10-07T08:21:58.075Z","avatar_url":"https://github.com/carpentries-incubator.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":["https://github.com/sponsors/carpentries","https://give.communityin.org/TheCarpentries"],"readme_doi_urls":["https://doi.org/10.5281/zenodo.6478122"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/55550","html_url":"https://science.ecosyste.ms/projects/55550","bibtex_url":"https://science.ecosyste.ms/projects/55550/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/55550/export.apalike"}