{"id":55673,"name":"scpacbio","description":null,"url":"https://github.com/singleron-rd/scpacbio","last_synced_at":"2025-09-05T13:58:12.958Z","repository":{"id":252753689,"uuid":"814922592","full_name":"singleron-RD/scpacbio","owner":"singleron-RD","description":null,"archived":false,"fork":false,"pushed_at":"2024-07-15T07:48:35.000Z","size":74,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"main","last_synced_at":"2024-08-12T09:54:04.584Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/singleron-RD.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-14T01:57:16.000Z","updated_at":"2024-08-12T09:54:08.117Z","dependencies_parsed_at":"2024-08-12T10:06:58.896Z","dependency_job_id":null,"html_url":"https://github.com/singleron-RD/scpacbio","commit_stats":null,"previous_names":["singleron-rd/scpacbio"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/singleron-RD/scpacbio","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-RD%2Fscpacbio","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-RD%2Fscpacbio/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-RD%2Fscpacbio/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-RD%2Fscpacbio/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/singleron-RD","download_url":"https://codeload.github.com/singleron-RD/scpacbio/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-RD%2Fscpacbio/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273768147,"owners_count":25164464,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"singleron-RD","name":"Singleron-R\u0026D","uuid":"72647785","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/72647785?v=4","repositories_count":6,"last_synced_at":"2023-03-04T05:10:23.804Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/singleron-RD","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T10:17:17.771Z","updated_at":"2023-03-04T05:10:23.834Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/singleron-RD","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/singleron-RD/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"singleron-rd/scpacbio","html_url":"https://github.com/singleron-rd/scpacbio","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T13:57:31.190Z","updated_at":"2025-09-05T13:57:31.190Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-rd%2Fscpacbio","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/singleron-rd%2Fscpacbio/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10100117,"issues_count":31473266,"pull_requests_count":97445500,"authors_count":10702683,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:48.456Z","updated_at":"2024-08-12T10:06:48.456Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/branch.yml","dependencies":[{"id":19651956806,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:48.642Z","updated_at":"2024-08-12T10:06:48.642Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/ci.yml","dependencies":[{"id":19651958429,"package_name":"actions/checkout","ecosystem":"actions","requirements":"b4ffde65f46336ab88eb53be808477a3936bae11","direct":true,"kind":"composite","optional":false},{"id":19651958430,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19651958431,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:51.782Z","updated_at":"2024-08-12T10:06:51.782Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":19651958466,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:52.502Z","updated_at":"2024-08-12T10:06:52.502Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":19651960064,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19651960065,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0a5c61591373683505ea898e09a3ea4f39ef2b9c","direct":true,"kind":"composite","optional":false},{"id":19651960066,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:53.029Z","updated_at":"2024-08-12T10:06:53.029Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":19651960159,"package_name":"actions/checkout","ecosystem":"actions","requirements":"b4ffde65f46336ab88eb53be808477a3936bae11","direct":true,"kind":"composite","optional":false},{"id":19651960160,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":19651960161,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0a5c61591373683505ea898e09a3ea4f39ef2b9c","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:53.176Z","updated_at":"2024-08-12T10:06:53.176Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/.github/workflows/linting.yml","dependencies":[{"id":19651960187,"package_name":"actions/checkout","ecosystem":"actions","requirements":"b4ffde65f46336ab88eb53be808477a3936bae11","direct":true,"kind":"composite","optional":false},{"id":19651960188,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"0a5c61591373683505ea898e09a3ea4f39ef2b9c","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"modules/nf-core/blastn/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:56.733Z","updated_at":"2024-08-12T10:06:56.733Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/nf-core/blastn/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.072Z","updated_at":"2024-08-12T10:06:57.072Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.226Z","updated_at":"2024-08-12T10:06:57.226Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.466Z","updated_at":"2024-08-12T10:06:57.466Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/correct_bc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.523Z","updated_at":"2024-08-12T10:06:57.523Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/local/correct_bc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/extract_bc/environment.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.678Z","updated_at":"2024-08-12T10:06:57.678Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/local/extract_bc/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/get_fasta/environment.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.740Z","updated_at":"2024-08-12T10:06:57.740Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/local/get_fasta/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/local/parse_blastn/environment.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.779Z","updated_at":"2024-08-12T10:06:57.779Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/local/parse_blastn/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"modules/nf-core/blastn/environment.yml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:57.883Z","updated_at":"2024-08-12T10:06:57.883Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/modules/nf-core/blastn/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-08-12T10:06:58.028Z","updated_at":"2024-08-12T10:06:58.028Z","repository_link":"https://github.com/singleron-RD/scpacbio/blob/main/pyproject.toml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:31.633Z","updated_at":"2025-10-07T08:22:01.096Z","avatar_url":"https://github.com/singleron-RD.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/55673","html_url":"https://science.ecosyste.ms/projects/55673","bibtex_url":"https://science.ecosyste.ms/projects/55673/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/55673/export.apalike"}