{"id":56224,"name":"plateviewer","description":"Renders HTS microscopy image data into a Minerva Story for visual review","url":"https://github.com/labsyspharm/plateviewer","last_synced_at":"2025-09-05T14:09:04.258Z","repository":{"id":251315182,"uuid":"836917486","full_name":"labsyspharm/plateviewer","owner":"labsyspharm","description":"Renders HTS microscopy image data into a Minerva Story for visual review","archived":false,"fork":false,"pushed_at":"2024-09-03T21:19:01.000Z","size":552,"stargazers_count":0,"open_issues_count":2,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-24T13:44:36.763Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/labsyspharm.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATIONS.md","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-01T20:40:58.000Z","updated_at":"2024-09-03T21:19:04.000Z","dependencies_parsed_at":"2024-08-05T05:41:46.548Z","dependency_job_id":"57b7a0c9-8b67-41df-9b26-f2cf7e805e40","html_url":"https://github.com/labsyspharm/plateviewer","commit_stats":null,"previous_names":["labsyspharm/plateviewer"],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/labsyspharm/plateviewer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm","download_url":"https://codeload.github.com/labsyspharm/plateviewer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273768124,"owners_count":25164465,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"labsyspharm","name":"Laboratory of Systems Pharmacology @ Harvard","uuid":"47149595","kind":"organization","description":"Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.","email":"hits@harvard.edu","website":"https://labsyspharm.org/","location":"Boston, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/47149595?v=4","repositories_count":150,"last_synced_at":"2024-12-24T13:42:49.677Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/labsyspharm","funding_links":[],"total_stars":624,"followers":67,"following":0,"created_at":"2022-11-09T17:02:55.438Z","updated_at":"2024-12-24T13:42:49.678Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"labsyspharm/plateviewer","html_url":"https://github.com/labsyspharm/plateviewer","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-02T05:03:33.284Z","updated_at":"2025-09-02T05:04:31.387Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fplateviewer/issues","issue_labels_count":{"bug":2,"enhancement":1},"pull_request_labels_count":{"enhancement":1},"issue_author_associations_count":{"CONTRIBUTOR":3},"pull_request_author_associations_count":{"CONTRIBUTOR":1},"issue_authors":{"jmuhlich":3},"pull_request_authors":{"jmuhlich":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10100117,"issues_count":31473266,"pull_requests_count":97445500,"authors_count":10702683,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/awsfulltest.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:23.994Z","updated_at":"2024-08-02T06:53:23.994Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/awsfulltest.yml","dependencies":[{"id":19467374814,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19467374820,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/awstest.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:25.041Z","updated_at":"2024-08-02T06:53:25.041Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/awstest.yml","dependencies":[{"id":19467376476,"package_name":"seqeralabs/action-tower-launch","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19467376477,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/branch.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:25.438Z","updated_at":"2024-08-02T06:53:25.438Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/branch.yml","dependencies":[{"id":19467376972,"package_name":"mshick/add-pr-comment","ecosystem":"actions","requirements":"b8f338c590a895d50bcbfa6c5859251edc8952fc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:25.889Z","updated_at":"2024-08-02T06:53:25.889Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/ci.yml","dependencies":[{"id":19467378417,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":19467378418,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19467378427,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/clean-up.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:27.066Z","updated_at":"2024-08-02T06:53:27.066Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/clean-up.yml","dependencies":[{"id":19467378600,"package_name":"actions/stale","ecosystem":"actions","requirements":"28ca1036281a5e5922ead5184a1bbf96e5fc984e","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/download_pipeline.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:27.554Z","updated_at":"2024-08-02T06:53:27.554Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/download_pipeline.yml","dependencies":[{"id":19467379143,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19467379144,"package_name":"jlumbroso/free-disk-space","ecosystem":"actions","requirements":"54081f138730dfa15788a46383842cd2f914a1be","direct":true,"kind":"composite","optional":false},{"id":19467379145,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":19467379146,"package_name":"eWaterCycle/setup-singularity","ecosystem":"actions","requirements":"931d4e31109e875b13309ae1d07c70ca8fbc8537","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/fix-linting.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:27.793Z","updated_at":"2024-08-02T06:53:27.793Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/fix-linting.yml","dependencies":[{"id":19467379417,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":19467379418,"package_name":"peter-evans/create-or-update-comment","ecosystem":"actions","requirements":"71345be0265236311c031f5c7866368bd1eff043","direct":true,"kind":"composite","optional":false},{"id":19467379419,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:28.302Z","updated_at":"2024-08-02T06:53:28.302Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/linting.yml","dependencies":[{"id":19467380823,"package_name":"actions/checkout","ecosystem":"actions","requirements":"0ad4b8fadaa221de15dcec353f45205ec38ea70b","direct":true,"kind":"composite","optional":false},{"id":19467380824,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":19467380825,"package_name":"nf-core/setup-nextflow","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19467380826,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"65462800fd760344b1a7b4382951275a0abb4808","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linting_comment.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:28.660Z","updated_at":"2024-08-02T06:53:28.660Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/linting_comment.yml","dependencies":[{"id":19467381019,"package_name":"dawidd6/action-download-artifact","ecosystem":"actions","requirements":"09f2f74827fd3a8607589e5ad7f9398816f540fe","direct":true,"kind":"composite","optional":false},{"id":19467381020,"package_name":"marocchino/sticky-pull-request-comment","ecosystem":"actions","requirements":"331f8f5b4215f0445d3c07b4967662a32a2d3e31","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-announcements.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:28.979Z","updated_at":"2024-08-02T06:53:28.979Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/.github/workflows/release-announcements.yml","dependencies":[{"id":19467381075,"package_name":"rzr/fediverse-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":19467381076,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"82c7e631bb3cdc910f68e0081d67478d79c6982d","direct":true,"kind":"composite","optional":false},{"id":19467381077,"package_name":"zentered/bluesky-post-action","ecosystem":"actions","requirements":"80dbe0a7697de18c15ad22f4619919ceb5ccf597","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:29.257Z","updated_at":"2024-08-02T06:53:29.257Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/subworkflows/nf-core/utils_nextflow_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:29.728Z","updated_at":"2024-08-02T06:53:29.728Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/subworkflows/nf-core/utils_nfcore_pipeline/meta.yml","dependencies":[]},{"ecosystem":"cpan","filepath":"subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","sha":null,"kind":"manifest","created_at":"2024-08-02T06:53:30.191Z","updated_at":"2024-08-02T06:53:30.191Z","repository_link":"https://github.com/labsyspharm/plateviewer/blob/main/subworkflows/nf-core/utils_nfvalidation_plugin/meta.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:51:32.378Z","updated_at":"2025-10-07T08:22:13.297Z","avatar_url":"https://github.com/labsyspharm.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.XXXXXXX","https://doi.org/10.5281/zenodo.XXXXXX","https://dx.doi.org/10.1038/s41587-020-0439-x"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/56224","html_url":"https://science.ecosyste.ms/projects/56224","bibtex_url":"https://science.ecosyste.ms/projects/56224/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/56224/export.apalike"}